Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac13g0351 | ATGGGTGATGATGAAGAACAGCTGCCACCGTCGTCAGCGCCGCCTCCGCCGTCGAAATCTAAGGCACTTCCGTTGCGGCCAACTATTAATCTGCCGCCAAGGACCTGTATGGAGTCGCTCTTCAGCGGTGGGCCGGGTTTGGGAAGCGGGTTTAGCCCAGGACCCATGACCCTCGTCTCGAGCTTCTTCTCCGATTCCGACGACTGCAAGTCTTTTTCTCAGCTCCTCGCCGGAGCTATGGCGTCGCCGGTGGCTGTTCCTCCGAGGGCGTCTGAGCTCAAGGGCCCTGCCGGTCTGCTCGATTCTCCGGGGCTTTTTTCTCCCGGTCAGGGACCTTTTGAAATGACACATCAGCAGGCTTTGGCTCAGGTTACTATGCAGGCTGCACAGACCTATTCTCATAAGCAAATACAAGGAGAATCTTTTTCTTCATTGGTACCACCCTCTGCATCCTCCTCAGAGCTTTTGACAACCTTTCCGGGCGAGAAGACTAAAGATCAGCCGGTGCCACCTTCATTGCTGAACTCTGCGGTTGCATCCAAGGAATCATCGGATATCTCTCAATCAGATCAGAGATTGCAATCTTCTTCGTGTAATGTCGATAGGCCTGCTGATGATGGCTACAATTGGAGAAAATATGGACAGAAACAAGTGAAGGGCAGTGAATTTCCTCGAAGTTACTACAAGTGCACGCACCCGAATTGTCCTGTCAAGAAAAAGGTCGAACGATCTCTGGAAGGTCAAGTCATTGAAATTATCTATAAGGGTGAGCACAACCACAAACGACCTCAACCGAACAAACGGGCAAAGGATGTTGGAAATTCGAATGGATGTTCAAGTATTCATGGAAATCCTGAGCTGTCTTCTCAAGTTCAGAGTGGATATTTGAATAAATTAAATGATCAGCAGACGGCTGTGTCTTCCATTGCAAAGAAGGATCAAGAATCGAGTCATGTTACACATGAACAGTTGTCCAGTACTAGTGATGGTGAGGGAGGGAGTGAGATAGAAACTGGAGTGAATCGAAAAGATGAAGACGAACCTGACGCCAAGAGACGGAATACTGAGGTCAGAGTTTCTGAGCCAGCAACTTCTCATAGGACGCTCACAGAATCCAGAATCATTGTGCAGACTACAAGTGAAGTCGATCTATTGGATGATGGCTACAGGTGGCGAAAGTATGGGCAGAAAGTTGTTAAAGGCAACCCTTACCCCAGGAGCTACTATAAATGCACAACTCCGGGATGCAATGTTCGTAAACATGTTGAGAGAGCTTCGACAGACCAAAAAGCTGTCATAACAACGTATGAGGGCAAACACAATCATGATGTTCCAGCTGGTAAAATCAGCAGCCACAGTACAGTCAACAGTAACGTTCCTCAGTTAAAATCACAAAATATAGCTACTGATAACAACACCGATCCTGGGAACTCTCGTCAACAGCCTGTTGGACTTCTACGATTAAAGAAAGAACAAATAACATAG | 1485 | 47.54 | MGDDEEQLPPSSAPPPPSKSKALPLRPTINLPPRTCMESLFSGGPGLGSGFSPGPMTLVSSFFSDSDDCKSFSQLLAGAMASPVAVPPRASELKGPAGLLDSPGLFSPGQGPFEMTHQQALAQVTMQAAQTYSHKQIQGESFSSLVPPSASSSELLTTFPGEKTKDQPVPPSLLNSAVASKESSDISQSDQRLQSSSCNVDRPADDGYNWRKYGQKQVKGSEFPRSYYKCTHPNCPVKKKVERSLEGQVIEIIYKGEHNHKRPQPNKRAKDVGNSNGCSSIHGNPELSSQVQSGYLNKLNDQQTAVSSIAKKDQESSHVTHEQLSSTSDGEGGSEIETGVNRKDEDEPDAKRRNTEVRVSEPATSHRTLTESRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCNVRKHVERASTDQKAVITTYEGKHNHDVPAGKISSHSTVNSNVPQLKSQNIATDNNTDPGNSRQQPVGLLRLKKEQIT | 494 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 2517778 | 2520759 | - | Lag0040147.1 | Lac13g0351 | 591507 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac13g0351 | 494 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 136 | 465 | IPR044810 | GO:0003700(InterPro) | |
| Lac13g0351 | 494 | SUPERFAMILY | WRKY DNA-binding domain | 377 | 445 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lac13g0351 | 494 | Gene3D | WRKY domain | 188 | 264 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lac13g0351 | 494 | Gene3D | WRKY domain | 370 | 446 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lac13g0351 | 494 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
| Lac13g0351 | 494 | MobiDBLite | consensus disorder prediction | 320 | 334 | - | - | |
| Lac13g0351 | 494 | MobiDBLite | consensus disorder prediction | 465 | 494 | - | - | |
| Lac13g0351 | 494 | MobiDBLite | consensus disorder prediction | 140 | 215 | - | - | |
| Lac13g0351 | 494 | ProSiteProfiles | WRKY domain profile. | 380 | 445 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lac13g0351 | 494 | MobiDBLite | consensus disorder prediction | 306 | 370 | - | - | |
| Lac13g0351 | 494 | SMART | WRKY_cls | 204 | 262 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lac13g0351 | 494 | SMART | WRKY_cls | 385 | 444 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lac13g0351 | 494 | MobiDBLite | consensus disorder prediction | 169 | 202 | - | - | |
| Lac13g0351 | 494 | Pfam | WRKY DNA -binding domain | 386 | 443 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lac13g0351 | 494 | Pfam | WRKY DNA -binding domain | 205 | 261 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lac13g0351 | 494 | MobiDBLite | consensus disorder prediction | 140 | 160 | - | - | |
| Lac13g0351 | 494 | SUPERFAMILY | WRKY DNA-binding domain | 203 | 263 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lac13g0351 | 494 | MobiDBLite | consensus disorder prediction | 465 | 480 | - | - | |
| Lac13g0351 | 494 | MobiDBLite | consensus disorder prediction | 269 | 292 | - | - | |
| Lac13g0351 | 494 | MobiDBLite | consensus disorder prediction | 336 | 360 | - | - | |
| Lac13g0351 | 494 | MobiDBLite | consensus disorder prediction | 254 | 268 | - | - | |
| Lac13g0351 | 494 | ProSiteProfiles | WRKY domain profile. | 205 | 263 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lac13g0351 | 494 | FunFam | WRKY transcription factor 33 | 372 | 438 | - | - | |
| Lac13g0351 | 494 | FunFam | WRKY transcription factor | 191 | 264 | - | - | |
| Lac13g0351 | 494 | MobiDBLite | consensus disorder prediction | 254 | 292 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac13g0351 | Lac-Chr13:2517778 | Lac5g0656 | Lac-Chr5:8070200 | 1.80E-71 | dispersed | |
| Lac13g0351 | Lac-Chr13:2517778 | Lac8g2724 | Lac-Chr8:44682047 | 5.80E-118 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 23145 | PF03106 | WRKY | 5.50E-25 | CL0274 | Lac | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac13g0351 | - | - | - | 0.0 |