Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0362 ATGACTTCCAAAGCTTTGACCCTCGTTCTCATCTGTTTCTTTTCATTCTCATCTTCCATTTTTGCAGAATTTGTTAAAGTTACAGTTAAAGGAGTGACCGCCATTGCCGAAACTGACAATGATTTCATTTGTGCTACTTTGGATTGGTGGCCTTCTAACAAATGCGATTATAACCAATGCCCTTGGGGAAAGGCTGGCCTTCTCAATTTGGATCTGCAGAATGTGATCTTGTCCAAGGCAATCAAGAAATTCAATCCTTTGAGAATCCGACTTGGAGGGTCACTTCAAGATCAAATCATCTACAGAGTTGGGAACTCAGTGAAGAAATGTCCTCAAATGAAGAAACAGGCTGATGGGTTGTTTGGATTCAGCAAAGGTTGCCTCCCCATGGAAAGATGGGACGATCTCAACCATCTCTTCAACAAAACATCTGCTCGTATTACGTTTGGTTTGAATGCTCTGATGGGAAAAACACCAGCCAAGGATGGAAGTATCAACTGGGTTGGCGATTGGGATCCTCGCAATGCTCGAGATTTCATCAAATACACTGCCTCTAAAGGATACAAAATCGATTCTTACGAACTGGGAAATGAGCTGTGTGCTGATGGAGTTTCTGCAAGGCTTGAGCCTGACCAATATGCCAAAGATCTCACTCTCATGAGACAAATTGTTGAAGAAGTGTATCCCGATGCCAATAACAGACCCAAAATTCTGGGCCCTGCTGGTTTCTTTGACAAAGAATGGTTCAAAACTTTCCTCCAAAACACTGGCCCAAATGTTGTTGATGGAGTCACCCACCATATTTACAATCTTGGTGCAGGTGTTGATCCAAATCTTATAAACAAGGTTCAAGACCCTTATTTTTTGGACCAAATTGCTCAAACGTTCAAGGAAGCGGCGGCTGTTTCAGAGAGCTTTGCGCCGTGGACTAAGCCATGGGTTGGTGAATCTGGTGGCGCTTATAACAGTGGTGGCAAAACTGTTTCTCACACCTTTGCCGATGGCTTCTGGTATTTGGATCAATTGGGCATGACGGCCACGTTCAACCATCATGTTTACTGCAGACAAGCCTTGATCGGTGGAAATTATGCTTTGCTTAACACCACTACTTTCATTCCCAACCCAGATTATTATAGCGCTCTTCTATGGCACAGACTAATGGGAAACAAGGTCCTCTCAGCCTCCCACGACAGCTCTCCATATCTTCGTGTCTACTCTCACTGCACCAAAAATAACCAAGGCGTGACAGTTCTTCTAATAAACATGTCGAACTCGACGACGTTCGATGTGAACATTGAGAACGACAGAAGGCTTTATCCAAACTTGATGGGCAGCGGATTGGAGGCTCGAGAAGAATACCATTTGACTCCGAAAGACGGCGACATCCAAAGCGACGTCATGCTTTTGAACGGAAGTCCTCTTCAGCTTACTCCAACGTTAGACATTCCCGACATGTCGCCCAACCTCGTCCCTCCCACTTCCGCTGTGTCGGTCGCCCCCGATTCTTTCGTCTTTGTCACCATCAAAGACTTCAAAGCTTCTGCTTGCGCCTAA 1554 45.11 MTSKALTLVLICFFSFSSSIFAEFVKVTVKGVTAIAETDNDFICATLDWWPSNKCDYNQCPWGKAGLLNLDLQNVILSKAIKKFNPLRIRLGGSLQDQIIYRVGNSVKKCPQMKKQADGLFGFSKGCLPMERWDDLNHLFNKTSARITFGLNALMGKTPAKDGSINWVGDWDPRNARDFIKYTASKGYKIDSYELGNELCADGVSARLEPDQYAKDLTLMRQIVEEVYPDANNRPKILGPAGFFDKEWFKTFLQNTGPNVVDGVTHHIYNLGAGVDPNLINKVQDPYFLDQIAQTFKEAAAVSESFAPWTKPWVGESGGAYNSGGKTVSHTFADGFWYLDQLGMTATFNHHVYCRQALIGGNYALLNTTTFIPNPDYYSALLWHRLMGNKVLSASHDSSPYLRVYSHCTKNNQGVTVLLINMSNSTTFDVNIENDRRLYPNLMGSGLEAREEYHLTPKDGDIQSDVMLLNGSPLQLTPTLDIPDMSPNLVPPTSAVSVAPDSFVFVTIKDFKASACA 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2580961 2583292 - Lag0040158.1 Lac13g0362 591518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0362 517 Pfam Glycosyl hydrolase family 79, N-terminal domain 25 343 IPR005199 GO:0016020(InterPro)|GO:0016798(InterPro)
Lac13g0362 517 FunFam heparanase-like protein 3 62 385 - -
Lac13g0362 517 Gene3D Glycosidases 64 385 - -
Lac13g0362 517 PANTHER HEPARANASE-RELATED 25 517 - GO:0004566(PANTHER)|GO:0009505(PANTHER)
Lac13g0362 517 SUPERFAMILY (Trans)glycosidases 38 387 IPR017853 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0362 Lac-Chr13:2580961 Lac5g2797 Lac-Chr5:46357945 4.80E-139 dispersed
Lac10g0131 Lac-Chr10:982022 Lac13g0362 Lac-Chr13:2580961 3.70E-163 wgd
Lac13g0362 Lac-Chr13:2580961 Lac3g0580 Lac-Chr3:4465454 1.70E-157 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0362 K07964 - csv:101214214 894.034