Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0368 ATGCTTTATGCTCTGCTTCAAGATTTAAACCGAAGGCGCTTCCTATTTAGAGTGGTTCTGAACTGGATTATTGAAGGGACTTCAGAAATATTGGACATGAGAAGCTCCTGGGTCAATAAAATATCTGTAATCTTAGGATCCAAACCACCATTCAGCTGGTTAATTTTGTGCCTCATCAGCGTGCTTGCGTTAATTGCAGTGCTAGGAACGTCTACTTCAAATGCCTTTGATTCAGTTACTACCACGCCAGTGTCTGACATTTATACTAGTTATAGAAGGCAAAAAGAAAGGGCCGCAAATGATTTGTTCGACTTAAAGTATCTTTCATTAGCTACAACTAGACTCAAAGAGTTTGGGCTTTGTGGAAAAGAAAGAGAAAACCACGTGCCATGTTACAATGTTACAGCAAACATGTTATCTGGATACAAAGAAGGGGAGGAGTATGATAGGCACTGTGAGGTGTCTAGAACAACAGAGCGGTGCCTGGTTCGTCCTCCTAAAGACTACAAGATCCCTCTGAGTTGGCCTGTTGGTAGGGATATAATATGGAGTGGAAATGTGAAGGTAACAAGAGATCAACTTCTGTCTTCTGGGAGCCCTACCAAAAGGTTGATGTTATTAGAAGAGAACCAAATTGCTTTCCACTCGGAGGATGGAGATGGAGTCAAAGAGTATTCTTTTCAAATCGCAGAGATGATTGGTTTAGGCTCCGACTCTGAATTTCTTCAAGCTGGTGTACGCTCCATACTTGATATTGGTTGTGGGTTTGGTAGCTTTGGTGCTCATTTAATATCAATGAAAGTAATGGTTATGTGCATTGCGACCTATGAAGCGACTGGCAGCCAAGTTCAAATGGCTCTCGAGAGAGGTCTTCCAGCGATGCTTGGAAGCTTTCTTACAAAACAGCTTCCATATCCATCCTTGTCATTTGACATGGTTCACTGTGCACAGTGTGGTATCTCTTGGAACGATAAAGGTGGAATATTCCTTATTGAAGCTGACCGGTTACTAAGACCTGGAGGTTATTTTGTTTTAACCTCTCCCACAGGCAAGCCAGTTGGAGGTTCATTGTCTTCCAAGAAGATGAACATTTTGACACCATTGGAAGAGATGACCAGAAAATTATGTTGGAATTTTTTGGCTCAGCAGTATGAAACTTACATTTGGCAGAAAACTTCAGATCCTCATTGCTATTTATCTCGCAAGCAGGAAGTTGTACCACTTTGTAAAGAAGGGCATGATACTCCATCATATTATCAACCTCTGGTACCATGCATAAGTAGTACTACCAGCGTTCGATCAGACGACTACTCTGATGAATTACAAATTTGGCGATCTGCTTTGAAAAACTATTGGTCCTTACTTACGCCTTTAATTTTCTCTGACCATCCAAAGAGGCCTGGTGATGAAGATCCATTACCTCCATTTAACATGATACGCAATGTCATGGACATGAACGCCCACTATGGGGGTTTAAACGCTGCGTTTGTGGAAGAGAAGAAAACAGTTTGGGTCATGAATGTTGTGCCTGTTGGGTCTCCTAATACGCTTCCGCTTATACTTGATCAAGGTTTTGCTGGTGTTCTGCACGATTGGTGTGAACCTTTCCCCACTTATCCTCGAACATATGATTTGCTCCATGCAAATGGGCTCCTCTCACAGCTACTTTCAAGTAGGTGCAGCATGATTGGATTATTAGTGGAGATGGATCGTATACTGCGTCCTGAGGGATGGGTTGTCCTAAAAGACAAAGTGGGACCGATAGAGAAGGCGCGAATGCTTGCTACACAGATTCGTTGGGAGGCAAGGGTGATTGACTCTCAGAATGGCAGTGACCAGAGGCTCCTTGTTTGCCAGAAACCATTCGTAAAAAAATGA 1878 42.65 MLYALLQDLNRRRFLFRVVLNWIIEGTSEILDMRSSWVNKISVILGSKPPFSWLILCLISVLALIAVLGTSTSNAFDSVTTTPVSDIYTSYRRQKERAANDLFDLKYLSLATTRLKEFGLCGKERENHVPCYNVTANMLSGYKEGEEYDRHCEVSRTTERCLVRPPKDYKIPLSWPVGRDIIWSGNVKVTRDQLLSSGSPTKRLMLLEENQIAFHSEDGDGVKEYSFQIAEMIGLGSDSEFLQAGVRSILDIGCGFGSFGAHLISMKVMVMCIATYEATGSQVQMALERGLPAMLGSFLTKQLPYPSLSFDMVHCAQCGISWNDKGGIFLIEADRLLRPGGYFVLTSPTGKPVGGSLSSKKMNILTPLEEMTRKLCWNFLAQQYETYIWQKTSDPHCYLSRKQEVVPLCKEGHDTPSYYQPLVPCISSTTSVRSDDYSDELQIWRSALKNYWSLLTPLIFSDHPKRPGDEDPLPPFNMIRNVMDMNAHYGGLNAAFVEEKKTVWVMNVVPVGSPNTLPLILDQGFAGVLHDWCEPFPTYPRTYDLLHANGLLSQLLSSRCSMIGLLVEMDRILRPEGWVVLKDKVGPIEKARMLATQIRWEARVIDSQNGSDQRLLVCQKPFVKK 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2611182 2614828 + Lag0040164.1 Lac13g0368 591524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0368 625 Gene3D Vaccinia Virus protein VP39 229 414 IPR029063 -
Lac13g0368 625 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 56 430 IPR004159 GO:0005737(PANTHER)|GO:0008168(InterPro)
Lac13g0368 625 CDD AdoMet_MTases 249 346 - -
Lac13g0368 625 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 445 587 IPR029063 -
Lac13g0368 625 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 127 452 IPR004159 GO:0008168(InterPro)
Lac13g0368 625 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 478 620 IPR004159 GO:0008168(InterPro)
Lac13g0368 625 FunFam probable pectin methyltransferase QUA2 210 392 - -
Lac13g0368 625 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 245 356 IPR029063 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0368 Lac-Chr13:2611182 Lac6g0900 Lac-Chr6:7937792 1.80E-177 dispersed
Lac13g0368 Lac-Chr13:2611182 Lac2g0732 Lac-Chr2:5620470 1.90E-187 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0368 K23870 - csv:101213009 1191.41