Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0378 ATGAAGAAACCCCCAACTGCTAAGTTGGAAAGCGTAAAACCCAGAGAAAAGATATTGATATTTTCAATTTCAAGAACATTTTGCAAACGCAAACTTGATTTCATCGGCTGTAAATCAGAGCAGCGATCGATCAGGGAACAAGTCTTGAACTTTGATCGAAGAATGTGGAAAAGAGCTCTGTGTTCGATTCCTCACAGGTCCTTTTCCTCTGCACCAGAAATCCCATCTCTTTACTCCTTCCTCCAGCCCTCGCTTTTTGCCCTAAAGAGAACCCCATTTTCGCCATCTCAAGAATCCACCGACCTCCGTCAGAATCAAACCCCTCAAGTTTTAACTACAGACCGTGTCGCCGCCGTAGAAACGACCCTCCACAAGTCCCTTCTCACCAGCGACACTGATGAGGCATGGAAATCCTTCAAATTGCTCACGAGAAGCTCTGTTTTCCCAAGTAAGTCTCTTACGAATTCACTTATTGCCCACTTGTCCTCAATCGGGGACGTTCATAATCTGAAAAGAGCCTTTGCGTCTGTGGTGTTTGTTATTGAGAAGAAGCCTGAACTATTGGATTTTGGATCTGTTAAGGCGCTATTGGCTTCTATGAAATGTGCCAACACTGCTGCCCCTGCTCTTTCTTTGATCAAATGCATGTTTAAGAATCGATGCTTTGTGCCTTTTAGTGTCTGGGGCAATGAACTTGTTGATATTTGCAGGCAGAGTGGTAGTTTGATTCCCTTTTTAAGAGTGTTTGAAGAGAACTGTAGGATTGCTTTAGATGAGAGGTTAGATTTTATGAAACCAGACCTTAATGCGTGTAATGCAGCACTAGAGGGGTGTTGCCACGAGCTTGAATCTGTAACGGATGCTGAGGAAGTTGTTGAAACGATGTCGATTTTGAATCTTCGGCCTGATGAAATGAGTTTTGGTTCTCTTGCTTATTTGTATGCATTGAAGGGGCTTGAACCGAAGATAATCGAGTTAGAAGGTTTGATGGGAAATTTTGGTTTTACACGTAAAAGCCTCTTCTTTAGTAATTTGGTAAGTGGATACATTAGTTCAGGCAACTTTGCTGCTGTTTCAAAGACTATGTTGCGCAGTTTGAAAGATGAATGTAGAGCACATGTAAATTTTGATGAAAAAACATATTTGGAAGTAGTTAAGGGCTTTGTCCAAAGTGGAAATCTGAAGGAGTTGTCCGCATTGATCGTTGATGCTCAGAATTTGGAGTCTTCATCAGAAGTTGATAGATCTATTGGATTTGGTATCATTAATGCCTGTGTTAATATTGGATGGTTAGATAAGGCGCACAGCATTCTAAACGAAATCAATTCCCAGGGAGTTTCTCTGGGCCTTGGAGTCTATCTGCCAATCTTGAAGGCTTATCGGAAGGAGCATCGAACAGCTGAAGCCACCCAATTAATCATGGATATTACCAGTTCTGGGCTTCAGTTGGATGCAGAGAGTTATGATGCTCTAATAGAGGCATCAATGTCGAGCCAAGATTTTCAGTCAGCTTTTGCTTTGTTCAGGAGTATGAGAGAAACAAGAAAATCTGACACGAAGGCTAGTTATCTAACTATTATGACTGGCTTAATGGAGAACCATAGGCCTGAGTTGATGGCTGCCTTCTTAGATGAAGTTGTCGAGGATCCTCTTGTTGAAGTTGGAACTCATGATTGGAACTCCATTATACATGCCTTTTGCAAAGCTGGAAGGCTCGAGGATGCAAGGAGAACATTCCGAAGAATGAAATTTCTGCAGTTTGAACCGAACGAGCAGACCTTCTTGTCCCTAATTAATGGCTACGTGTCTGCAGAGAGGTATTTCTGTGTTCTAATGCTGTGGAATGAACTTAAGTGGAAGGTTACAGCAAATGGGGAGAGAGGTATCAAACTGGATAGCAACTTAGTTGATGCATTCCTGTACGCTTTGGTCAAGGGAGGTTTCTTTGATGCCGTGATGCAAGTTGTCGAAAAAACTAAGGATACGAAGATCTTCGTTGATAAGTGGAAATATAAGCAAGCGTTCATGGAGACTCATAAGAAACTGAAAGTGGCAAAATTGAGGAGGAGGAACCACAGGAAAATGGAAGCACTAATTGCTTTCAAGAACTGGGCTGGTCTGAATGTTTGA 2130 42.11 MKKPPTAKLESVKPREKILIFSISRTFCKRKLDFIGCKSEQRSIREQVLNFDRRMWKRALCSIPHRSFSSAPEIPSLYSFLQPSLFALKRTPFSPSQESTDLRQNQTPQVLTTDRVAAVETTLHKSLLTSDTDEAWKSFKLLTRSSVFPSKSLTNSLIAHLSSIGDVHNLKRAFASVVFVIEKKPELLDFGSVKALLASMKCANTAAPALSLIKCMFKNRCFVPFSVWGNELVDICRQSGSLIPFLRVFEENCRIALDERLDFMKPDLNACNAALEGCCHELESVTDAEEVVETMSILNLRPDEMSFGSLAYLYALKGLEPKIIELEGLMGNFGFTRKSLFFSNLVSGYISSGNFAAVSKTMLRSLKDECRAHVNFDEKTYLEVVKGFVQSGNLKELSALIVDAQNLESSSEVDRSIGFGIINACVNIGWLDKAHSILNEINSQGVSLGLGVYLPILKAYRKEHRTAEATQLIMDITSSGLQLDAESYDALIEASMSSQDFQSAFALFRSMRETRKSDTKASYLTIMTGLMENHRPELMAAFLDEVVEDPLVEVGTHDWNSIIHAFCKAGRLEDARRTFRRMKFLQFEPNEQTFLSLINGYVSAERYFCVLMLWNELKWKVTANGERGIKLDSNLVDAFLYALVKGGFFDAVMQVVEKTKDTKIFVDKWKYKQAFMETHKKLKVAKLRRRNHRKMEALIAFKNWAGLNV 709
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2670290 2672419 + Lag0040174.1 Lac13g0378 591534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0378 709 Gene3D Tetratricopeptide repeat domain 230 418 IPR011990 GO:0005515(InterPro)
Lac13g0378 709 Gene3D Tetratricopeptide repeat domain 422 706 IPR011990 GO:0005515(InterPro)
Lac13g0378 709 PANTHER BNAC05G43320D PROTEIN 66 708 - -
Lac13g0378 709 Pfam PPR repeat family 559 602 IPR002885 -
Lac13g0378 709 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 555 589 IPR002885 -
Lac13g0378 709 Pfam PPR repeat 421 446 IPR002885 -
Lac13g0378 709 Pfam Pentatricopeptide repeat domain 473 523 IPR002885 -
Lac13g0378 709 NCBIfam pentatricopeptide repeat 559 591 IPR002885 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0378 Lac-Chr13:2670290 Lac4g2258 Lac-Chr4:42278732 5.80E-63 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0378 - - - 0.0