Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0380 ATGGGCGAAGCAAACGAAGCAGGAAGTAGAGGAATGGAGAAGGTTCCTCTGCAAACTGAAAAGTACCCAACAGATCTGTTGCAGAGATTTTTGTGTAGCAATTCACATCAGGCCCAACTTGGGGCTTTTAATGAAGAAGAAGAAGACGCGGAGGAGATTGAGCTCAATCTTGGGCTTTCACTTGGGGGTCGATTTGGGGTTGACAAAAATTCCAAGAAGCTTATTCGCTCGTCGTCGATCGCCGGGACGATACCGCTTTTGAGGGACGACGAGGGCTCTACTCGGGCGGCGGTGTCGTACCCGGCGCTTATTCGGACGTCGTCTCTTCCGCCGGAGACGGAGGAGGATTGGAGGAAGAGGAAGGAATTGCAGACGTTGAGACGAATGGAGGCGAAGAGGAGGCGGTTTGAGAAGCAGAGGAATAAGGATGGGATTGGGATGGGGACTGGCGGGTGTTTTGAAGAAGAGAGGCGAGAAATTGAAGGCCTTACTGGATTGAATTTGAGAGAGAAAAGACCTTGTTCGGGTATTGCGACGGTGGCGCCGCCGTTCGGGTTGCCGACGTGGGCTGCAGCTGCTCGGCAGGCTCTTATGGGCGGAATTGTGGATGACGTTGCCAAAGGCAAAGGGTGCACATCCGGTGGTGCTGGAGGCAGTGGCGGAGGTTTACCGCTAGGCGTCGGACAGCCTGCTTCTCAGTGCTCCGCTGAATCGCAGGGTGGAAGCTCGTCGGGGATGTCGGAATTGGACAGCAAACACATTCAAGGATCGAGCAGTTACAGTGAAGCGAGAAGCTCCTCACAAGAACGAGGCAACCCAGAGGCTGCAGGTTCTTCAGGATCAAAAACGTGCGAAAACCCATCTGGCATTTCCAAAGCAGAGACAAAAAATCAATCCAAGAAACCTGATTCGGGCGAGAACAGGGGGAGAGAAGCAGGAACGACATCGATGGAAGACATGCCTTGTGTGTTCACAATAGGGGATGGGCCTGATGGGAGAAGGGTGGAAGGAATACTTTACAAGTATGGAAAAGGGGAGGAAGTGAGGATAATGTGTGTTTGCCATGGGAAGTTTCTGTCACCAGCTGAGTTTGTGAAGCATGCTGGTGGAAAAAATGTGGCTCACCCACTAAGACATATAGTTGTCAATCCCAATTCTGGTCCCTTTTTGTGA 1173 52.0 MGEANEAGSRGMEKVPLQTEKYPTDLLQRFLCSNSHQAQLGAFNEEEEDAEEIELNLGLSLGGRFGVDKNSKKLIRSSSIAGTIPLLRDDEGSTRAAVSYPALIRTSSLPPETEEDWRKRKELQTLRRMEAKRRRFEKQRNKDGIGMGTGGCFEEERREIEGLTGLNLREKRPCSGIATVAPPFGLPTWAAAARQALMGGIVDDVAKGKGCTSGGAGGSGGGLPLGVGQPASQCSAESQGGSSSGMSELDSKHIQGSSSYSEARSSSQERGNPEAAGSSGSKTCENPSGISKAETKNQSKKPDSGENRGREAGTTSMEDMPCVFTIGDGPDGRRVEGILYKYGKGEEVRIMCVCHGKFLSPAEFVKHAGGKNVAHPLRHIVVNPNSGPFL 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2678257 2680991 - Lag0040176.1 Lac13g0380 591536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0380 390 Pfam Ethylene-responsive binding factor-associated repression 48 82 IPR012463 -
Lac13g0380 390 MobiDBLite consensus disorder prediction 222 321 - -
Lac13g0380 390 Pfam Tify domain binding domain 349 382 IPR032308 -
Lac13g0380 390 Coils Coil 119 139 - -
Lac13g0380 390 Pfam Putative nuclear localisation signal in Ninja/AFP proteins 103 139 IPR032310 -
Lac13g0380 390 PANTHER AFP HOMOLOG 2 1 385 IPR031307 GO:0005634(PANTHER)|GO:0007165(InterPro)|GO:0009737(PANTHER)|GO:0045892(PANTHER)
Lac13g0380 390 MobiDBLite consensus disorder prediction 231 295 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0151 Lac-Chr10:1138835 Lac13g0380 Lac-Chr13:2678257 3.40E-26 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0380 - - - 0.0