Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0383 ATGGATCCCCCCACCATCTACCGCTCTCGCAGAACCACCAACAAATCTGACCTCTACTCCACAGTTGTCATCCATTCCAATTCCGATTCCGACTCCGACAACAATCCCACCGATCGGAACCTTCAGCGCCGACGAAGGCAGCCCAGCGAAGGACAAGACCCATACGCCACAATGGTCTATAAGGACGTCGACAAGGGCCGCGAGGATGACGATGACGATGATTCCTCTCTCCCTCCTCTCCTTAAACGTCTTCCCAAGGATTTCGGTGGCGGAGCCCCAATTGACTACGAGGACGACGATGATTTTGGATTTGATCACGAGACTGAAGATTTTGGTACTATGATCGTCAAGACGGATAGGAATCGTCCTCGCAATCGCTCTGGGTCTTCATCAGCTTCGACGAAGCCTCGAAGTTCGCCGTTACCATTCGTGAATTTTCAGACGGGGAGCCCTGGGACGAGAGGAGGCGGTAGAGGTGGTAGTGAAGAAGGCGACGAGAGCGAGGAAGATGATGGTGATGGGTTTTCGACGTTTGTGGTGAGGTCCACGGCGAAGTCGCGGAGCAGAGAATCTGTTAGTGGGACTATTATTCGAAGGACGGGCGGTAGTCGTATTGATACTAGAGATGGAGGCGTAGGACTTGAGGGGTCCACGTTGGGCAGAGCGGTGGCGAGTATGCAAGGAATGGGAGAGTTAGGGTTTGGGAAGCAGAGGAAGGGGAATGGATCCCCGAGGAGTGAGGAAGGCGGTGGTCGGATATGCAGTAAGGTATCTTCGAGTTCGATTCCTGAAAGCATCACCAGGGAAGATCCAAATTCTAAGTATGAATTGCTCAACGAACTCGGAAAGGGGTCCTATGGGGCTGTTTATAAAGCAAGGGATATTAAGACCTCTGAGCTGGTTGCTATAAAGGTCATTTCTTTGTGTGAAGGGGAGGAAGGATATGAAGAAATTCGTGGTGAAATAGAGATGTTGCAGCAATGCAGTCATCCAAATGTTGTCCGCTATCTTGGGAGCTATCAAGGAGAGGAGTACCTATGGATAGTAATGGAGTACTGTGGGGGTGGCAGTGTTGCTGACTTGATGAATGTTACTGAGGAAGCTCTAGAGGAATATCAGATAGCATATATCTGTAGGGAGGCATTGAAGGGCCTCACTTATCTTCACTCAATATTCAAAGTTCATAGAGATATCAAGGGCGGTAATATTTTGTTAACTGAGCAAGGAGATGTCAAGTTGGGTGATTTTGGAGTTGCAGCCCAGCTAACTAGGACCATGTCAAAGCGCAATACATTCATTGGCACTCCACATTGGATGGCTCCAGAAGTTATTCAGGAAAGTCGGTACGATGGGAAGGTGGATGTGTGGGCTCTTGGTGTTTCTGCTATTGAAATGGCTGAGGGGCTTCCTCCAAGATCAGCAGTGCATCCAATGAGGGTTTTATTCATGATATCTATTGAGCCAGCTCCAATGCTTGAAGACAAAGAAAAATGGTCCCTGGTGTTCCACGATTTTGTTGCGAAGTGTCTGACAAAAGATCCTCGTTCACGTCCTGCTGCTTCTGAGATGTTGAAGCACAAATTCATTGAGAAATGCAGATGTGGGGCATCGGCAATGTTGCCCAAGATTGAAAAGGCTAGGAAAATTAGGACTTTGATGGCTCAGCAAGCACATAGTATTCCTCCAGATGCATCAGGAGATGGTACTATAGTAGCTGCAAAGTTGAATCAAGATTATGGAGATACTGTTCCTTCAAAGCCTCAGAATATTGGACTTCAGGTAGCAAATGAAATGCCTGCTGGTGGCACTTGGAGGAAGCTAGAGCAATCAGGTACTTTTGGCACTGTAATAGTCCATGATGGAGATGAGAATGATAAGGTGTCTCAAATGGATATTGGCAATGCTGAAACACCAACTGGTCCTTTAAGCAATGAATGTCCATCCATTAGTGTAACTGGACTCAAAATTGACTCTAGTGTGGTGGATGGTACGGGAGGTATTGTAAATAATATTCTTGATGGAAAATCGGATCCCACCATGAATGCATCTTCACCTTCATTTTTGGGTATTCATGAGCTTGGCACCTTGAAGAATGAAACTGTCAGCCGGAAATCTTTTGCTCTGCAGGACAAGCTTTGGTCCATTTATGCAGCGGGTAATACTGTACCCATTCCGTTCTTGAGGGCTACTGATATATCCCCTGTTGCCTTGTTATCTGACAATGTCCTCGGAGGCATGCAGCAAGATAATAAGGGTGCTGTTGCAGTGGAAACCGTTCAGGAACTTTTCACTGGTGATGGACAATCAAAAAAGGGTCGCAGGGGACAAAATGAGATGCCCCTTCCACCCAGTGTTTATCAAAGACTTACTTCAAGTCCGACACTATTGAACCTTGCCCAGGCTTTAGCTTACCACAGAATGTGTTATGAAGACATGCCACTCCAGGAGTTGCAAGCGACTCAAGAACAACAAACCATTCAAAACCTTTGTGATACACTCAGAACTATCCTCCTGTCATCCTCACAGCGTAAGGAACTACTACTACTTTTAGCTATTGCCAGAACAGGGGCTTACTCCAGCATAGAGGATAAACTGTTCTATGTGAAAGTGAAGCAGTTTCTTCATCAAGAAGCCTAA 2637 46.72 MDPPTIYRSRRTTNKSDLYSTVVIHSNSDSDSDNNPTDRNLQRRRRQPSEGQDPYATMVYKDVDKGREDDDDDDSSLPPLLKRLPKDFGGGAPIDYEDDDDFGFDHETEDFGTMIVKTDRNRPRNRSGSSSASTKPRSSPLPFVNFQTGSPGTRGGGRGGSEEGDESEEDDGDGFSTFVVRSTAKSRSRESVSGTIIRRTGGSRIDTRDGGVGLEGSTLGRAVASMQGMGELGFGKQRKGNGSPRSEEGGGRICSKVSSSSIPESITREDPNSKYELLNELGKGSYGAVYKARDIKTSELVAIKVISLCEGEEGYEEIRGEIEMLQQCSHPNVVRYLGSYQGEEYLWIVMEYCGGGSVADLMNVTEEALEEYQIAYICREALKGLTYLHSIFKVHRDIKGGNILLTEQGDVKLGDFGVAAQLTRTMSKRNTFIGTPHWMAPEVIQESRYDGKVDVWALGVSAIEMAEGLPPRSAVHPMRVLFMISIEPAPMLEDKEKWSLVFHDFVAKCLTKDPRSRPAASEMLKHKFIEKCRCGASAMLPKIEKARKIRTLMAQQAHSIPPDASGDGTIVAAKLNQDYGDTVPSKPQNIGLQVANEMPAGGTWRKLEQSGTFGTVIVHDGDENDKVSQMDIGNAETPTGPLSNECPSISVTGLKIDSSVVDGTGGIVNNILDGKSDPTMNASSPSFLGIHELGTLKNETVSRKSFALQDKLWSIYAAGNTVPIPFLRATDISPVALLSDNVLGGMQQDNKGAVAVETVQELFTGDGQSKKGRRGQNEMPLPPSVYQRLTSSPTLLNLAQALAYHRMCYEDMPLQELQATQEQQTIQNLCDTLRTILLSSSQRKELLLLLAIARTGAYSSIEDKLFYVKVKQFLHQEA 878
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2705705 2716112 + Lag0040179.1 Lac13g0383 591539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0383 878 SMART serkin_6 275 529 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac13g0383 878 MobiDBLite consensus disorder prediction 125 154 - -
Lac13g0383 878 MobiDBLite consensus disorder prediction 24 212 - -
Lac13g0383 878 CDD STKc_MAP4K3_like 274 529 - -
Lac13g0383 878 ProSiteProfiles Protein kinase domain profile. 275 529 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac13g0383 878 Pfam Protein kinase domain 275 529 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac13g0383 878 SUPERFAMILY Protein kinase-like (PK-like) 272 530 IPR011009 -
Lac13g0383 878 MobiDBLite consensus disorder prediction 253 268 - -
Lac13g0383 878 Gene3D Transferase(Phosphotransferase) domain 1 271 562 - -
Lac13g0383 878 MobiDBLite consensus disorder prediction 107 124 - -
Lac13g0383 878 MobiDBLite consensus disorder prediction 232 269 - -
Lac13g0383 878 MobiDBLite consensus disorder prediction 36 50 - -
Lac13g0383 878 MobiDBLite consensus disorder prediction 179 200 - -
Lac13g0383 878 PANTHER SERINE/THREONINE-PROTEIN KINASE TAO 248 562 IPR050285 GO:0006468(PANTHER)|GO:0035556(PANTHER)|GO:0043408(PANTHER)
Lac13g0383 878 FunFam Aurora kinase A 267 356 - -
Lac13g0383 878 FunFam serine/threonine-protein kinase dst1 isoform X1 272 561 - -
Lac13g0383 878 ProSitePatterns Protein kinases ATP-binding region signature. 281 304 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0383 Lac-Chr13:2705705 Lac2g1245 Lac-Chr2:10155119 3.60E-70 dispersed
Lac13g0383 Lac-Chr13:2705705 Lac12g1216 Lac-Chr12:17025241 2.30E-29 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85847 PF00069 Pkinase 6.30E-68 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0383 - - - 0.0