Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0383 ATGGATCCCCCCACCATCTACCGCTCTCGCAGAACCACCAACAAATCTGACCTCTACTCCACAGTTGTCATCCATTCCAATTCCGATTCCGACTCCGACAACAATCCCACCGATCGGAACCTTCAGCGCCGACGAAGGCAGCCCAGCGAAGGACAAGACCCATACGCCACAATGGTCTATAAGGACGTCGACAAGGGCCGCGAGGATGACGATGACGATGATTCCTCTCTCCCTCCTCTCCTTAAACGTCTTCCCAAGGATTTCGGTGGCGGAGCCCCAATTGACTACGAGGACGACGATGATTTTGGATTTGATCACGAGACTGAAGATTTTGGTACTATGATCGTCAAGACGGATAGGAATCGTCCTCGCAATCGCTCTGGGTCTTCATCAGCTTCGACGAAGCCTCGAAGTTCGCCGTTACCATTCGTGAATTTTCAGACGGGGAGCCCTGGGACGAGAGGAGGCGGTAGAGGTGGTAGTGAAGAAGGCGACGAGAGCGAGGAAGATGATGGTGATGGGTTTTCGACGTTTGTGGTGAGGTCCACGGCGAAGTCGCGGAGCAGAGAATCTGTTAGTGGGACTATTATTCGAAGGACGGGCGGTAGTCGTATTGATACTAGAGATGGAGGCGTAGGACTTGAGGGGTCCACGTTGGGCAGAGCGGTGGCGAGTATGCAAGGAATGGGAGAGTTAGGGTTTGGGAAGCAGAGGAAGGGGAATGGATCCCCGAGGAGTGAGGAAGGCGGTGGTCGGATATGCAGTAAGGTATCTTCGAGTTCGATTCCTGAAAGCATCACCAGGGAAGATCCAAATTCTAAGTATGAATTGCTCAACGAACTCGGAAAGGGGTCCTATGGGGCTGTTTATAAAGCAAGGGATATTAAGACCTCTGAGCTGGTTGCTATAAAGGTCATTTCTTTGTGTGAAGGGGAGGAAGGATATGAAGAAATTCGTGGTGAAATAGAGATGTTGCAGCAATGCAGTCATCCAAATGTTGTCCGCTATCTTGGGAGCTATCAAGGAGAGGAGTACCTATGGATAGTAATGGAGTACTGTGGGGGTGGCAGTGTTGCTGACTTGATGAATGTTACTGAGGAAGCTCTAGAGGAATATCAGATAGCATATATCTGTAGGGAGGCATTGAAGGGCCTCACTTATCTTCACTCAATATTCAAAGTTCATAGAGATATCAAGGGCGGTAATATTTTGTTAACTGAGCAAGGAGATGTCAAGTTGGGTGATTTTGGAGTTGCAGCCCAGCTAACTAGGACCATGTCAAAGCGCAATACATTCATTGGCACTCCACATTGGATGGCTCCAGAAGTTATTCAGGAAAGTCGGTACGATGGGAAGGTGGATGTGTGGGCTCTTGGTGTTTCTGCTATTGAAATGGCTGAGGGGCTTCCTCCAAGATCAGCAGTGCATCCAATGAGGGTTTTATTCATGATATCTATTGAGCCAGCTCCAATGCTTGAAGACAAAGAAAAATGGTCCCTGGTGTTCCACGATTTTGTTGCGAAGTGTCTGACAAAAGATCCTCGTTCACGTCCTGCTGCTTCTGAGATGTTGAAGCACAAATTCATTGAGAAATGCAGATGTGGGGCATCGGCAATGTTGCCCAAGATTGAAAAGGCTAGGAAAATTAGGACTTTGATGGCTCAGCAAGCACATAGTATTCCTCCAGATGCATCAGGAGATGGTACTATAGTAGCTGCAAAGTTGAATCAAGATTATGGAGATACTGTTCCTTCAAAGCCTCAGAATATTGGACTTCAGGTAGCAAATGAAATGCCTGCTGGTGGCACTTGGAGGAAGCTAGAGCAATCAGGTACTTTTGGCACTGTAATAGTCCATGATGGAGATGAGAATGATAAGGTGTCTCAAATGGATATTGGCAATGCTGAAACACCAACTGGTCCTTTAAGCAATGAATGTCCATCCATTAGTGTAACTGGACTCAAAATTGACTCTAGTGTGGTGGATGGTACGGGAGGTATTGTAAATAATATTCTTGATGGAAAATCGGATCCCACCATGAATGCATCTTCACCTTCATTTTTGGGTATTCATGAGCTTGGCACCTTGAAGAATGAAACTGTCAGCCGGAAATCTTTTGCTCTGCAGGACAAGCTTTGGTCCATTTATGCAGCGGGTAATACTGTACCCATTCCGTTCTTGAGGGCTACTGATATATCCCCTGTTGCCTTGTTATCTGACAATGTCCTCGGAGGCATGCAGCAAGATAATAAGGGTGCTGTTGCAGTGGAAACCGTTCAGGAACTTTTCACTGGTGATGGACAATCAAAAAAGGGTCGCAGGGGACAAAATGAGATGCCCCTTCCACCCAGTGTTTATCAAAGACTTACTTCAAGTCCGACACTATTGAACCTTGCCCAGGCTTTAGCTTACCACAGAATGTGTTATGAAGACATGCCACTCCAGGAGTTGCAAGCGACTCAAGAACAACAAACCATTCAAAACCTTTGTGATACACTCAGAACTATCCTCCTGTCATCCTCACAGCGTAAGGAACTACTACTACTTTTAGCTATTGCCAGAACAGGGGCTTACTCCAGCATAGAGGATAAACTGTTCTATGTGAAAGTGAAGCAGTTTCTTCATCAAGAAGCCTAA 2637 46.72 MDPPTIYRSRRTTNKSDLYSTVVIHSNSDSDSDNNPTDRNLQRRRRQPSEGQDPYATMVYKDVDKGREDDDDDDSSLPPLLKRLPKDFGGGAPIDYEDDDDFGFDHETEDFGTMIVKTDRNRPRNRSGSSSASTKPRSSPLPFVNFQTGSPGTRGGGRGGSEEGDESEEDDGDGFSTFVVRSTAKSRSRESVSGTIIRRTGGSRIDTRDGGVGLEGSTLGRAVASMQGMGELGFGKQRKGNGSPRSEEGGGRICSKVSSSSIPESITREDPNSKYELLNELGKGSYGAVYKARDIKTSELVAIKVISLCEGEEGYEEIRGEIEMLQQCSHPNVVRYLGSYQGEEYLWIVMEYCGGGSVADLMNVTEEALEEYQIAYICREALKGLTYLHSIFKVHRDIKGGNILLTEQGDVKLGDFGVAAQLTRTMSKRNTFIGTPHWMAPEVIQESRYDGKVDVWALGVSAIEMAEGLPPRSAVHPMRVLFMISIEPAPMLEDKEKWSLVFHDFVAKCLTKDPRSRPAASEMLKHKFIEKCRCGASAMLPKIEKARKIRTLMAQQAHSIPPDASGDGTIVAAKLNQDYGDTVPSKPQNIGLQVANEMPAGGTWRKLEQSGTFGTVIVHDGDENDKVSQMDIGNAETPTGPLSNECPSISVTGLKIDSSVVDGTGGIVNNILDGKSDPTMNASSPSFLGIHELGTLKNETVSRKSFALQDKLWSIYAAGNTVPIPFLRATDISPVALLSDNVLGGMQQDNKGAVAVETVQELFTGDGQSKKGRRGQNEMPLPPSVYQRLTSSPTLLNLAQALAYHRMCYEDMPLQELQATQEQQTIQNLCDTLRTILLSSSQRKELLLLLAIARTGAYSSIEDKLFYVKVKQFLHQEA 878
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2705705 2716112 + Lag0040179.1 Lac13g0383 591539

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0383 878 SMART serkin_6 275 529 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac13g0383 878 MobiDBLite consensus disorder prediction 125 154 - -
Lac13g0383 878 MobiDBLite consensus disorder prediction 24 212 - -
Lac13g0383 878 CDD STKc_MAP4K3_like 274 529 - -
Lac13g0383 878 ProSiteProfiles Protein kinase domain profile. 275 529 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac13g0383 878 Pfam Protein kinase domain 275 529 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac13g0383 878 SUPERFAMILY Protein kinase-like (PK-like) 272 530 IPR011009 -
Lac13g0383 878 MobiDBLite consensus disorder prediction 253 268 - -
Lac13g0383 878 Gene3D Transferase(Phosphotransferase) domain 1 271 562 - -
Lac13g0383 878 MobiDBLite consensus disorder prediction 107 124 - -
Lac13g0383 878 MobiDBLite consensus disorder prediction 232 269 - -
Lac13g0383 878 MobiDBLite consensus disorder prediction 36 50 - -
Lac13g0383 878 MobiDBLite consensus disorder prediction 179 200 - -
Lac13g0383 878 PANTHER SERINE/THREONINE-PROTEIN KINASE TAO 248 562 IPR050285 GO:0006468(PANTHER)|GO:0035556(PANTHER)|GO:0043408(PANTHER)
Lac13g0383 878 FunFam Aurora kinase A 267 356 - -
Lac13g0383 878 FunFam serine/threonine-protein kinase dst1 isoform X1 272 561 - -
Lac13g0383 878 ProSitePatterns Protein kinases ATP-binding region signature. 281 304 IPR017441 GO:0005524(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0383 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0383 Lac-Chr13:2705705 Lac2g1245 Lac-Chr2:10155119 3.60E-70 dispersed
Lac13g0383 Lac-Chr13:2705705 Lac12g1216 Lac-Chr12:17025241 2.30E-29 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac2g1245 . 1 694 MAP Kinase Kinase Kinase Kinase AT1G53165 62.6 7.8e-222 767.7
Lac13g0383 . 268 533 MAP Kinase Kinase Kinase Kinase AT1G53165 51.3 2.9e-67 254.2
Lac2g1245 . 1 693 MAP Kinase Kinase Kinase Kinase AT3G15220 64.7 1.7e-232 803.1
Lac13g0383 . 268 533 MAP Kinase Kinase Kinase Kinase AT3G15220 50.9 1.3e-67 255.4
Lac13g0383 . 4 837 MAP Kinase Kinase Kinase Kinase AT1G69220 59.4 2.8e-239 825.9
Lac2g1245 . 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 51.8 4.5e-67 253.8
Lac8g2588 . 1 658 MAP Kinase Kinase Kinase Kinase AT5G14720 67.6 7.6e-254 874.0
Lac7g0640 . 32 386 MAP Kinase Kinase Kinase Kinase AT5G14720 51.0 1.0e-96 352.1
Lac5g0129 . 7 677 MAP Kinase Kinase Kinase Kinase AT4G24100 61.6 5.7e-223 771.5
Lac5g0129 . 11 677 MAP Kinase Kinase Kinase Kinase AT4G10730 61.6 2.7e-222 769.2
Lac5g0129 . 5 339 MAP Kinase Kinase Kinase Kinase AT1G70430 51.4 1.3e-100 364.8
Lac11g0581 . 1 677 MAP Kinase Kinase Kinase Kinase AT1G79640 59.5 8.6e-218 754.2
Lac8g2588 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.8 4.2e-105 379.4
Lac11g0581 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 51.9 5.2e-87 319.3
Lac5g0129 . 17 251 MAP Kinase Kinase Kinase Kinase AT1G23700 54.2 1.2e-62 238.4
Lac7g0640 . 32 492 MAP Kinase Kinase Kinase Kinase AT4G14480 57.4 1.9e-142 503.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003387 1 1 1 1 1 2 1 2 3 0 3 2 1 1 1 1 3 2 1 3 1 3 1 1 1 2 1 1 4 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85847 PF00069 Pkinase 6.30E-68 CL0016 Lac PK