Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0407 ATGGCTCTTAAATCTCTGCTAAAACCCAAATGCTCCATTAGAAAATTCTTCCTTTCTTCTTCCTCCATATCGGTTTCGCAATTCTCGTCTCTCTGTAAACAACGCATCTTCTCACTGCCTTACGAATCCCCACCAGCTGCTAAAAAAGTCCCTTTCACTCACTCAGTTCATGGCGTTACGCTGCAAGATCCCTACCATTGGATGTCCAACACCGACGACCCTGATCTCGCCGACTACCTCCGTCGAGAAAACTTGTACGCTGAATCTTTCATGGCCGATACTCAGATTCTGCAGCGGCGGCTCTTCTCCGAGATGACGAGTCGAATGCCCGCCAAGGTTTCCACTCCTCCTGAGCCTTGGGGACCCTGGTTTTACTACCAGTACATTCCGGAGGGGAAGGATTACCCAGTTCTATGTCGTAGGTTACAGAATGAGGAAGGCGGTTGGTTAAAGAAATTTGTACGATTTGCCAAAGGAAATTTTGGGAGGGTGGAGGAAGTTTTGCTTGATTGGAATGAAATTGCTAAACAATATGGCTATGTTCACGTGGGAACTTGCCGTGTTTCACCAGACCACAACTTTCTGGCATACACAGTTGATATTACTGGCAGTGAACACTTCATGCTTCAGGTTAAAGACCTCAGAACTGGACTGATAATTCCCAAGTTACAGGAGGGAGTTGTAAGTTTGGCTTGGGCAGAAGAAGGCAGGATGCTTTTTTATACACAAGCAGATGAGAATCAGCGACCGTACAGGGTTTTCTGCACAAAAGTTGGATGTACAGATATGGAAGATGTCTTGGTGTTTGTCGAAAATGATCCCAACTATTGTGTAGACATAACAAGCACAAAAGATGGGAAGTTCATAACTGTGAATTCGAACTCGAGGACTTCTTCTGAGGAAGGAACTTACCTATTTCAATTTTTTTCTGTTTATATTATAGATGCTAACGACTCATTAAGTGGTTTGCAAAGAATACACAAACGCATTCCTGGTATTCAGTACTTTCTGGAACATCATAGTGGTTTCTTTTATATCCTAACAAATGCTCCTCTAGAAAAGAATGGAGATTGTTCCAAGGAAGAGTATTATGTAGCTCGATGTCAAGTTGAAGATATTAAGTCAGCAGATTGGCAGGATATCATCCTTCAGAGTGAAGATTTCAGTATACAGGACATGGACATTTTTAATGGACATCTTGTGCTTTTTGTCAATAATAAGGGTGTTCCGATGTTATGTTCAATCAATTGGCCTTTAGATGCTAATTATAAGCAACGATTGGAGCTCAAGACACTTGACCCATGGTTTTTCCCTCTTCCCTCAAATTCCTGCAATGTAGCTCCAGGCTCAAACCATGACTTCATGAGCTCGTTATACCGTGTGGTGCTTTCATCTCCAGTGATGCCAGATTTGATTGTTGACTATGACATGTCTAAACGGGTCTTCTCAATCATTCAGCAAGAGGAAGTACAAGTTAAGAATGATGTTAAACGTAAAACATATGTCCCGGATGAGTTGGATATAGAAGAAGCTTCAGATGCACAAAACAAAAGAGAGAACTTCCAGAATAGTGAATCCCAAATTTGGAAGGACTTTTCTGATGCATACTGTTGTGATAGGAAGGAAGTTATATCACATGACGGCACCAGAATACCCTTGACCATATTGTATTCTCCAATGACTTTTCAGAAAGGACAGTCACCTGGAGTTCTACAAGGGTATGGAGCATATGGTGAAATCCTGGATAAAAGTTGGTGTCCTAATCGCCTGAGTTTACTTGATCGTGGTTTTGTGTTGGCATTTGCAGACGTCAGGGGAGGAGGCGGTGTTGGTGATTCTTCATGGCATAGATGTGGGAGTGGGCTTGAGAAACAAAATTCAATACATGACTTTATCTCTTGTGCGAATTTCCTCACTGATAATGGTTATGTTCATAAGAATCGGCTTGGCTCCATTGGATACAGTGCAGGAGGTCTTCTTGTTGGGGCTGCTATCAACATGCATCCCGACCTGTTTCGAGCAGCCATTTTGAAGGTTCCATTTCTTGACATATGCAACACGCTACTAGATCCAACTTTACCTCTCACCATTCTGGATTATGAAGAATTCGGAAACCCACAGATACCTGTGCAGTTCAAGTCCATTTTGAGCTATTCTCCCTACGATAACATATCTCGAGGAAGTTGTTATCCTTCTATGCTCGTCACTGCATCATTTCGTGATGCAAGACCAATATGCTTGGAGGACATTTTGGTGAAGGTGGCCTCTACAGTGGATGTGAAGAGACAGCTTACGAGTACGCATTTCTCATCAAAGTCCTCGGAACTTCTGAATGTGATTAAACTTTTGCACAATGTGATGAGAGAACTACAGTCTTCCAGTAACGAAGAGAAGTGCTTTGCTGCCGCTACCATGGCGGCCTCTGGCCCAGTTGGAGATGCTGCAGCCTTGGATGTCTCTGCATTTCCACCATCAGAGAAGAGCAGAGGAAATGAGGCTCCTTGA 2505 43.07 MALKSLLKPKCSIRKFFLSSSSISVSQFSSLCKQRIFSLPYESPPAAKKVPFTHSVHGVTLQDPYHWMSNTDDPDLADYLRRENLYAESFMADTQILQRRLFSEMTSRMPAKVSTPPEPWGPWFYYQYIPEGKDYPVLCRRLQNEEGGWLKKFVRFAKGNFGRVEEVLLDWNEIAKQYGYVHVGTCRVSPDHNFLAYTVDITGSEHFMLQVKDLRTGLIIPKLQEGVVSLAWAEEGRMLFYTQADENQRPYRVFCTKVGCTDMEDVLVFVENDPNYCVDITSTKDGKFITVNSNSRTSSEEGTYLFQFFSVYIIDANDSLSGLQRIHKRIPGIQYFLEHHSGFFYILTNAPLEKNGDCSKEEYYVARCQVEDIKSADWQDIILQSEDFSIQDMDIFNGHLVLFVNNKGVPMLCSINWPLDANYKQRLELKTLDPWFFPLPSNSCNVAPGSNHDFMSSLYRVVLSSPVMPDLIVDYDMSKRVFSIIQQEEVQVKNDVKRKTYVPDELDIEEASDAQNKRENFQNSESQIWKDFSDAYCCDRKEVISHDGTRIPLTILYSPMTFQKGQSPGVLQGYGAYGEILDKSWCPNRLSLLDRGFVLAFADVRGGGGVGDSSWHRCGSGLEKQNSIHDFISCANFLTDNGYVHKNRLGSIGYSAGGLLVGAAINMHPDLFRAAILKVPFLDICNTLLDPTLPLTILDYEEFGNPQIPVQFKSILSYSPYDNISRGSCYPSMLVTASFRDARPICLEDILVKVASTVDVKRQLTSTHFSSKSSELLNVIKLLHNVMRELQSSSNEEKCFAAATMAASGPVGDAAALDVSAFPPSEKSRGNEAP 834
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2863741 2869245 + Lag0040203.1 Lac13g0407 591563

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0407 834 Gene3D - 119 489 - -
Lac13g0407 834 Pfam Prolyl oligopeptidase family 589 745 IPR001375 GO:0006508(InterPro)|GO:0008236(InterPro)
Lac13g0407 834 SUPERFAMILY Peptidase/esterase 'gauge' domain 40 491 - -
Lac13g0407 834 Gene3D alpha/beta hydrolase 492 782 IPR029058 -
Lac13g0407 834 Gene3D alpha/beta hydrolase 41 118 IPR029058 -
Lac13g0407 834 Pfam Prolyl oligopeptidase, N-terminal beta-propeller domain 44 484 IPR023302 GO:0004252(InterPro)
Lac13g0407 834 SUPERFAMILY alpha/beta-Hydrolases 540 743 IPR029058 -
Lac13g0407 834 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 653 673 IPR002470 GO:0004252(InterPro)|GO:0006508(InterPro)
Lac13g0407 834 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 623 642 IPR002470 GO:0004252(InterPro)|GO:0006508(InterPro)
Lac13g0407 834 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 711 726 IPR002470 GO:0004252(InterPro)|GO:0006508(InterPro)
Lac13g0407 834 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 594 618 IPR002470 GO:0004252(InterPro)|GO:0006508(InterPro)
Lac13g0407 834 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 568 586 IPR002470 GO:0004252(InterPro)|GO:0006508(InterPro)
Lac13g0407 834 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 730 752 IPR002470 GO:0004252(InterPro)|GO:0006508(InterPro)
Lac13g0407 834 PANTHER PROTEASE FAMILY S9A OLIGOPEPTIDASE 30 743 IPR051543 GO:0009507(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0407 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0407 Lac-Chr13:2863741 Lac6g2841 Lac-Chr6:46038337 1.10E-142 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g945 . . . . Bpe13g01395 . . . Cmo04g01650 . . . Car04g01628 . Sed08g1575 . Cpe01g01400 Bhi07g01449 Tan04g0961 Cmetu10g1342 Lac13g0407 Hepe10g1818 . . . . . . . . . Cone13ag0930 Cone19ag0923 Cone6ag0559 Cone9ag0566 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007009 2 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 3 1 1 37