Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0414 ATGTCCATTGCAATGAAGAAGAAGCCAATAATGTCTTCGGCTGAACTTATCTTAGCTTCCATCTCAGAAATCATAGATTCCACTGCGTGCAGTGAAGAAGAGCATGGAAAATTTATTGAGATTGGAAGCTACTTTTATCGAGCATCTCTGGCCATTGTGGAGCTACAAGCAATAGACCCGATAAATTTCGATGAAATCCTCCAATCTCTAAACAAAAGCATCAATCTTGCAAAGGATCTTGTGGAGAAGTTCCTAACAGGCATTCAACTAGTCTCAGATCCTGATCCAATTAGCGTCATAGATCCACTAGAACAGCTGATAAAACAAATGGGTAAATGCTTGAATAAGCTAGCAGCCTGTACATTTGAGGATCAGAATTATGTGAAAATGGCAATTCTATCACTTTCAGACGAGATGCAGAATATATCCACTAAAATTGTCCAAGCTCAAGCCATAATGAATAAGGAAGAGATACGAACTTCTTTGGAGGAACAATCAGAAAAGGAACCAGAAGTTGTAGAAAAAGATCTATACCCTATTTACATGGACTGGGACACAAACAATACACAATCCCCAGTTGCATCGGAGTTGAGTGACGCTGTTTCAAATACAAACGGAAGAAGCCAAATGAAGTATAGAAATGTTACAGCAGCCTTGACAAGACTACCCTCAATGGGCCACTACATAGAACCGCTCTTTGAGACCTTCATCTGTCCATTGACAAAGGATATCATGGATGATCCAGTTAGCCTGGAAACGGGAGTGACATATGAAAAACAAGCAATTGTTAAGTGGTTTGAAGAGTTTGAAGAATCTGAGGAAATTTTCTGCCCAGTCACAGGGCAAAAGCTTGTGTCCAAAGCTTTTAATTCCAACAAAGCTCTGAAGTCTACAATAGACAAATGGAAGGAACGCAATGAAATAGCAACGATCAAAGTCGCCCGAGCCGCTCTGTCTTTAGCCAGCTCAGATGAGATGGTGCTTGAGGCAATCAAAGACCTGTCATGCATTAGCAAAGGGAAGCAGTTCTATGTAGAACGGATCTTCAATTTTGACATTTTACCTTTGCTCGTTAAGTTGTTGGAGTACAGAGACAAAGATGTTAGATATGCAGTTCTAGAGCTATTGCAGCAAATGGCAGAAATGAACGAAAACAACAAGAAGATGATCTGTAACCAATTGGACATGTCAAGAATGGTCAATCTACTATCAAGTAGTCACAGGTCCATCCGGAATACATCTTTGCTTCTGCTGCATGACCTTTCAAGATCCCAGTCATTGTCTGATCAAATTGGTTCAGCAATTGGGGGGATTTCGATGCTGATCATCATGAAGGACGATAGGTCTGATGAATTTGCTTCAGAAAAGGCAGATGAAACCTTGAGAAACTTGGAGAAAACTCCAACTAATATCAAGCTTATGGCAGAATATGGTCTCATGGAGCCCCTCTTAAGGCATCTTACCGAAGGTAGTGAGTGGATGAGAATAGAAATGGCAAGCTATCTTGGGGAGATTGTTATTAGACATGATTGTATGGAGAATGTAGCTGAGAGGGCCTCTCCAGCTCTTGTCAAGATGGTGCACGAAGGAGATTCACTTGTCCGAAAGGCGGCATTTAAAGCTCTATTGCAAATTTCATCTCACAACTGTAATGGTGAAATACTAGCAAAAGCTGGAACTGTACAAGTCATGGCTGAAGAGATGTTTACTCGTACCATTTGTGATGAACTTAATGATCCGAAAACAGAAGCAGCTGAAATACTGGCAAATATATGCGAGTGGAGTCTTGATCTTGAGACACTTCAAGTTAATGCTCATGGCTACACAATGAGTTCGGATTATGTAGTCTACAACATCATCGACTTGCTCAAGAACTCAACCCCAGCTGAATTTAGCACGAGCCTCATCAGAATACTATTATGCTTGACAAAATCTCCAAAACCAATGGACACCATTGTTTCAGGTGTTAAAAACGCCGACGCATGTGATACCCTGATAGAGTTCATCAATAGTCCAGACGAAGAACTCGGAGTTGCGGCAATAAAACTGCTTATAGCACTGTCCCCTTACATGGGCTTCACAATGGCAGAAAGACTCTGCGAAACCAGTGACCAAGTGGAAAACCTTACCAGTAGCATTACTTGGACAAACCAAGTCACAGAGAAGCAGGCACTTTCAGCAACATTCTTATCAAAACTACCTCACCAGAGTCCAACTCTTAACACCGTTCTCGTAAACAAGAGCATCATACCCAAGATCCTGCAAACAATCAATCAAATACAGAGCAGTGGAACAGGAATGAGCAGATATGCATGTGTTTTGCTAGAGGGTTCGGTGGGAATTCTTGTCAGATTCACAGCAACACTTTATGAGCCGCAAATTTTGTTTCAAGCAAAAATTCACAATTTTACATCAGTATTTGCCAACCTGCTCGCGCAAACGTCAAGCGATGAAGTTCAAAAGCTATCCGCCATTGGGTTGGAGAAACTATCATCAGCATCCACGAGTCTATCTAAGCCCCTCGACATTAAAAGAAACAAGGTCATGAAATTTCTCCACTTACCCAAGCTTCTATCGCTAGGTTCATCAAAGAAGTATCACTTACGAGTATGCCCAGTTCATAAAGGGGCTTGCTCTTCACAAAACACATTCTGTTTAGTCCATGCGAAGGCAATTGAAAGGCTATTGACATGTTTAGACAATGAGAACGAAGAAGTAGTTGAGGCAGCTCTGTCAGCCATTTGTACGCTGGTGGATGACAAAGTGGATCTGGACAGAAGTGTGAGCCTGCTGAACGAATTTGACACAATAAGGCATGTTCTGAATGTGGTGAGAATGCATAAGCAAGAATCTCTATGGCATAAATCATTCTGGTTGATCGAGAAGTTCTTGCTCAAAGGTGGGGAAGAGTCTCTTACCAATATATCACAGGACAGATCGTTGCCCGCCATATTGATTACTGCTTCCCATCAAGGGGACGGCGAAATGAAGCAGATCGCAGAGAAGATACTGAACCATTTGAATATGGTACCAAATTTCTCTGCTCCTGATTATACTCAACTCAATGATTAG 3072 41.6 MSIAMKKKPIMSSAELILASISEIIDSTACSEEEHGKFIEIGSYFYRASLAIVELQAIDPINFDEILQSLNKSINLAKDLVEKFLTGIQLVSDPDPISVIDPLEQLIKQMGKCLNKLAACTFEDQNYVKMAILSLSDEMQNISTKIVQAQAIMNKEEIRTSLEEQSEKEPEVVEKDLYPIYMDWDTNNTQSPVASELSDAVSNTNGRSQMKYRNVTAALTRLPSMGHYIEPLFETFICPLTKDIMDDPVSLETGVTYEKQAIVKWFEEFEESEEIFCPVTGQKLVSKAFNSNKALKSTIDKWKERNEIATIKVARAALSLASSDEMVLEAIKDLSCISKGKQFYVERIFNFDILPLLVKLLEYRDKDVRYAVLELLQQMAEMNENNKKMICNQLDMSRMVNLLSSSHRSIRNTSLLLLHDLSRSQSLSDQIGSAIGGISMLIIMKDDRSDEFASEKADETLRNLEKTPTNIKLMAEYGLMEPLLRHLTEGSEWMRIEMASYLGEIVIRHDCMENVAERASPALVKMVHEGDSLVRKAAFKALLQISSHNCNGEILAKAGTVQVMAEEMFTRTICDELNDPKTEAAEILANICEWSLDLETLQVNAHGYTMSSDYVVYNIIDLLKNSTPAEFSTSLIRILLCLTKSPKPMDTIVSGVKNADACDTLIEFINSPDEELGVAAIKLLIALSPYMGFTMAERLCETSDQVENLTSSITWTNQVTEKQALSATFLSKLPHQSPTLNTVLVNKSIIPKILQTINQIQSSGTGMSRYACVLLEGSVGILVRFTATLYEPQILFQAKIHNFTSVFANLLAQTSSDEVQKLSAIGLEKLSSASTSLSKPLDIKRNKVMKFLHLPKLLSLGSSKKYHLRVCPVHKGACSSQNTFCLVHAKAIERLLTCLDNENEEVVEAALSAICTLVDDKVDLDRSVSLLNEFDTIRHVLNVVRMHKQESLWHKSFWLIEKFLLKGGEESLTNISQDRSLPAILITASHQGDGEMKQIAEKILNHLNMVPNFSAPDYTQLND 1023
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2909812 2914325 + Lag0040210.1 Lac13g0414 591570

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0414 1023 Pfam U-box domain 234 307 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac13g0414 1023 Pfam Armadillo/beta-catenin-like repeat 879 917 IPR000225 GO:0005515(InterPro)
Lac13g0414 1023 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 227 315 IPR013083 -
Lac13g0414 1023 Coils Coil 372 392 - -
Lac13g0414 1023 ProSiteProfiles U-box domain profile. 231 309 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac13g0414 1023 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 15 1014 IPR052608 -
Lac13g0414 1023 SMART arm_5 879 919 IPR000225 GO:0005515(InterPro)
Lac13g0414 1023 SMART arm_5 383 423 IPR000225 GO:0005515(InterPro)
Lac13g0414 1023 SMART arm_5 467 507 IPR000225 GO:0005515(InterPro)
Lac13g0414 1023 SMART arm_5 341 381 IPR000225 GO:0005515(InterPro)
Lac13g0414 1023 ProSiteProfiles HEAT repeat profile. 353 387 IPR021133 -
Lac13g0414 1023 CDD RING-Ubox_PUB 234 287 IPR045210 -
Lac13g0414 1023 SUPERFAMILY ARM repeat 520 1007 IPR016024 -
Lac13g0414 1023 Gene3D - 516 688 IPR011989 -
Lac13g0414 1023 Coils Coil 292 312 - -
Lac13g0414 1023 Gene3D - 791 1015 IPR011989 -
Lac13g0414 1023 Gene3D - 316 515 IPR011989 -
Lac13g0414 1023 SMART Ubox_2 235 302 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac13g0414 1023 SUPERFAMILY ARM repeat 316 630 IPR016024 -
Lac13g0414 1023 SUPERFAMILY RING/U-box 220 311 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0414 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0414 Lac-Chr13:2909812 Lac6g0084 Lac-Chr6:734020 2.90E-116 dispersed
Lac9g2738 Lac-Chr9:45540783 Lac13g0414 Lac-Chr13:2909812 1.70E-06 dispersed
Lac13g0414 Lac-Chr13:2909812 Lac3g0922 Lac-Chr3:7435052 2.40E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1007 . Blo16g01073 . Bda11g01163 Bpe13g01362 . . . . Cmo18g01102 . Cma18g01080 . Car18g01002 Sed08g1853 Cpe09g00244 . Bhi07g01438 Tan04g0950 Cmetu03g1218 Lac13g0414 Hepe10g1828 . . Cla05g02371 Cam05g2539 Cec05g2569 Cco05g2608 Clacu05g2536 Cmu05g2395 Cre05g2512 . . . . Lsi04g00332 Csa05g02538 Chy10g01080 . . . . Bda11g01163 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012245 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 29