Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0418 ATGGATATTGGCGACAGAGATAAATTTAGACTAGAAAGTAGCTCAGAGGATTGTATTAACTATTCACATAGCATGTCTTCGGATTGGCGATTTGGCGAGACGACTCTCACGAGTATGCCGATGGGTTTGGTTTTGCCAGGGAATGTGGATGTAGTTAGGAATCAGGATATGGTTGGTTGTGCTTCTTCCACTGCTCCTGTTGTAGAGTCATTTAGCTCTACTATCTGGGAACAAGCAGCTAATTGTCAAAACTTGGGAATTGGCAACATTCAAGGCCATAACAACTGCAGTACTTCAAACACCATAGCAATTAACAAGGCCAGTCCAGTTTCTTTGAGCAGTGACATTGACAGAACTCTTGACATGAGCTGGAACCTAGCTCATAATATGTTGAAAGGGGGAGTTTACCTACCTAATATTGCCGGTGTGCTCCCACCGAGCTTATCTCAACTTCCAGCTGATTCTTCATTCATTGAGCGTGCAGCCAGGCTCTCCTGCTTCAGTGGTGGAAATTTTGGTGATCTTGTAGGCCATTTCAACATTCCTGAGCCTATGGGTGTTTTTCCTAGAGGCATGGGAGTAATGCCTGAGAGACGAGATGATATTCCACGAAATGGGTTAGGTTCGGTATCTGGAACTGTAGGGCAATCTCAAAGAAACATGGTTAACAACGGTGAAGCTTCCAAGCCTGTTTCTTTGACCATTGAACATGGAGTTACTGAACAGGGTTCACCTAAAAATGGAAGCCCCTTGAAATTGGACGATCGTGGTATACATGCTGTTGATGGTTCTGTTAATGAATCTGATGAAACTGAGTTTAGTGGAGGTGATGGTTCGGGTGAGCCATGTACGTTAGAGGTCGCTGGTAAGGAACTTTCTGCTAAGGGCCTTGGCACGAGGAAAAGGAAAAGGAGTGGACAGAAGACTGAACTTGATCAAGCCAATGGACCTCTGCAACAAAATAGTGTTTCAGCTAAGGATAATACTGAAACTCAGCAAAAGGGAGATCCAAATCCGAGTTCAACTGCAAACAAGGGTACAGGAAAACATGGCAAACATGCATCTCAACCTTCAGATCCACCAAAGGAAGAGTATATTCATGTTAGAGCTCGAAGGGGCCAGGCGACAAACAGCCATAGTCTTGCAGAAAGGGTAAGGAGGGAGAAAATCAGTGAGAGGATGAAGTTTCTTCAAGAACTAGTCCCTGGTTGCAGCAAGGTTACCGGAAAGGCAGTGATGCTAGATGAAATCATTAACTATGTCCAATCACTCCAACGACAAGTTGAGTTTTTATCAATGAAACTCGCTACCGTCAATCCAAGGTTGGATATCAACATCGATGGGCTCCTAGCCAAAGACATTCTTCAATCACGAGCTGGTCCATCGTCGAGATTAGGATTTTCTTCACATTTACCCGTTGCTTGTCCCCCGCCACATATTTCACATCATGGACTCATCCCAGGCAGTTTTCCTGGCATAGGGAGCTCTGAGATGTTAAGAAGCACAGTAAGTTCCCAGATGACTCCAAGATCTGGTGGATTCAAGGAGCCTACTCAGATAAAGAATGTGTGGGATGGTGAACTCCAAAACATTGTGCAGATGAGCTTTGGAATGTCCACTGCCCCCAATTGTTTAGATGTTGAAGGATCTGATTCACCAGGCAATACCAAAGTTGAACATTGA 1683 44.5 MDIGDRDKFRLESSSEDCINYSHSMSSDWRFGETTLTSMPMGLVLPGNVDVVRNQDMVGCASSTAPVVESFSSTIWEQAANCQNLGIGNIQGHNNCSTSNTIAINKASPVSLSSDIDRTLDMSWNLAHNMLKGGVYLPNIAGVLPPSLSQLPADSSFIERAARLSCFSGGNFGDLVGHFNIPEPMGVFPRGMGVMPERRDDIPRNGLGSVSGTVGQSQRNMVNNGEASKPVSLTIEHGVTEQGSPKNGSPLKLDDRGIHAVDGSVNESDETEFSGGDGSGEPCTLEVAGKELSAKGLGTRKRKRSGQKTELDQANGPLQQNSVSAKDNTETQQKGDPNPSSTANKGTGKHGKHASQPSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQELVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDINIDGLLAKDILQSRAGPSSRLGFSSHLPVACPPPHISHHGLIPGSFPGIGSSEMLRSTVSSQMTPRSGGFKEPTQIKNVWDGELQNIVQMSFGMSTAPNCLDVEGSDSPGNTKVEH 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2925494 2927928 - Lag0040214.1 Lac13g0418 591574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0418 560 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 374 424 IPR011598 GO:0046983(InterPro)
Lac13g0418 560 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 149 495 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Lac13g0418 560 FunFam Basic helix-loop-helix transcription factor 371 443 - -
Lac13g0418 560 Pfam Helix-loop-helix DNA-binding domain 377 425 IPR011598 GO:0046983(InterPro)
Lac13g0418 560 MobiDBLite consensus disorder prediction 265 284 - -
Lac13g0418 560 MobiDBLite consensus disorder prediction 196 224 - -
Lac13g0418 560 MobiDBLite consensus disorder prediction 295 309 - -
Lac13g0418 560 CDD bHLH_AtBPE_like 364 449 - -
Lac13g0418 560 SMART finulus 380 430 IPR011598 GO:0046983(InterPro)
Lac13g0418 560 MobiDBLite consensus disorder prediction 209 224 - -
Lac13g0418 560 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 372 442 IPR036638 GO:0046983(InterPro)
Lac13g0418 560 MobiDBLite consensus disorder prediction 310 351 - -
Lac13g0418 560 Gene3D - 371 444 IPR036638 GO:0046983(InterPro)
Lac13g0418 560 MobiDBLite consensus disorder prediction 289 361 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0418 Lac-Chr13:2925494 Lac2g0427 Lac-Chr2:3116135 1.50E-45 dispersed
Lac3g0654 Lac-Chr3:5080163 Lac13g0418 Lac-Chr13:2925494 1.10E-33 transposed
Lac7g1062 Lac-Chr7:9396666 Lac13g0418 Lac-Chr13:2925494 1.50E-50 transposed
Lac13g0418 Lac-Chr13:2925494 Lac4g2224 Lac-Chr4:41900211 8.00E-15 wgd
Lac13g0418 Lac-Chr13:2925494 Lac8g2147 Lac-Chr8:39867065 1.20E-119 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23148 PF00010 HLH 6.30E-06 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0418 - - - 0.0