Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0422 ATGGGGAAAAATTCACCCCACTCCCTCCCCCATTCCCATGCAATCGGGGATTCCCCGCCCCGTTCGAGGCGGGTCCCTGCGGGAACCATGGCGTCTTCTCCGACTCCCATCTCTCCGCTCTCTTTTCCCAACCTAAAATCAATACCAAAACCAAACAAACTGCCGTCTTCACTGCCTCCTGCGTGGAACCCCAGCCCCAAATCTATGCCCAAGGAGCTTTACTTCAACCGCGATGGCTCAGCCTTGAAAAAGCTTCAGGTCGGTGTTGATTTGGTGGCGGAGTTGGTGGGTGTTACGTTAGGGCCGAAGGGGAGGAACGTGGTGCTTCAAAACAAATATGGGCCACCCAAGATTGTCAACGACGGTGAAACTGTCCTGAAAGAGATTGAGTTGGAAGACCCTTTAGAGAACGTCGGGGTGAAATTGGTGAGACAAGCTGGTGCAAAGACAAATGACCTTGCTGGTGATGGTTCCACTACATCCGTCGTTCTTGCGCAGGGATTGATTGCTGAGGGTATGAAGGTTATTTCATCCGGCATGAATCCTGTTCAAATTGCCCGTGGGATTGAGAAGACTGCAAAAGCACTAGTTTCTGAGCTGAAATTGATGTCAAGAGAGGTTGAAAATGATGAGATAGCACATGTTGCTGCAGTTAGTGCGGGGAATGATTATGCCGTGGGAAATATGATTTCAGATGCGTTACGTCAAGTTGGAAGGAAAGGAGTCGTCCAAATTGAAAAAGGGAAGAGTATAGATAACAGTCTGCAAATTGTTGAAGGGATGCAATTTGATCGTGGATATTTGTCTCCGTACTTTGTTACTGATAGACAGAAGATGATAGTAGAATTTCATGATTGCAAGTTACTGTTGGTCGACAAAAAAATTTCAGATCCAAAGGAGATGTTTAAAATATTGGACAGTGCAGTGAAAGAGAAATACCCAATTGTGATATTGGCGGAGGGCATTGAGCAGGAAGCTCTGGCTCCAGTAATTAGGAATAAACTTAGAGGTGTGCTGAAGGCAGCTGCTATCAAGGCTCCTGCCTTTGGCGAGCGCAAGAGTCACTACTTAGATGACATAGCGACCTTAACTGGAGCAACTGTGATCAGAGAAGATAGTGGATTGACTTTAGAAAAGACCGGCAAAGAGGTATTGGGCTCTGCTACTAAGGTTGTTATATCAAAGGATTCCACACTAATAGTTACAGATGGGAGTACTCGGGAAGCAGTTCAGAAAAGGGTTTTACAAATTCAAAAGCTTATGGAGAATACTGAGGAAAAATTTCCAAAGAAGATACTGAATGAGAGAATTGCTAGATTATCTGGGCGAATTGCTATACTTCAGGTAGGAGCACAAACTCAAGTTGAGTTGAAGGATAGACAGTTAAGGATTGAGGATGCCTTGAATGCTTCGAAGGCTGCTATTGAAGAAGGCGTTGTTGTTGGTGGAGGTTGTTGTCTTTTAAGGCTGTCTACCAAGGTGGATGCTATAAAAAATGTCCTGGAAAATGACGAACAGATGATTGGAGCTGAAATTTTCAAAAGGGCTTTGTGTTATCCTACAAAACTGATAGCGAGAAATGCCGGTGTCAATGGAAGTGTGGTTATAGATAAGGTTCTAATTAACAATGATATGAATTATGGATATAATGCCGCCACAGACCATTACGAGGATTTAATGAAAGCTGGAATCATGGATCCATCAAAGGTAGTCAGATGTTGCCTGGAGCATGCAGCTTCTGTTGCCAAAACTTTTCTGACATCCGATGCTGTTGTAGTTGATATAAAGGAACCAGAACCCATCCCAAGAAGAACACCGATGCCAAGCTCAGGCAAATGGGTCTTTAGCTCGGCGGACAAGATCAGAGTAAGATCAAAGCATGTGGGGATGGAGTATTCTCAAGTTGAAGGAATTCTACGAGAGAACTGTTTTCAGGCACAACCGCACGATGTTTCGGCCACCAGGCAAATAGGTCTCGAGCCACCATTAAGAGTAAATGTTCTTGCCCAATTTGTAGCCATGATGAACTGGCTGATAACAAGCAGGTTGAGCAGCAAGGTCAAAGACAAGGAGGCCAAGAATTTGTAG 2088 44.68 MGKNSPHSLPHSHAIGDSPPRSRRVPAGTMASSPTPISPLSFPNLKSIPKPNKLPSSLPPAWNPSPKSMPKELYFNRDGSALKKLQVGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENVGVKLVRQAGAKTNDLAGDGSTTSVVLAQGLIAEGMKVISSGMNPVQIARGIEKTAKALVSELKLMSREVENDEIAHVAAVSAGNDYAVGNMISDALRQVGRKGVVQIEKGKSIDNSLQIVEGMQFDRGYLSPYFVTDRQKMIVEFHDCKLLLVDKKISDPKEMFKILDSAVKEKYPIVILAEGIEQEALAPVIRNKLRGVLKAAAIKAPAFGERKSHYLDDIATLTGATVIREDSGLTLEKTGKEVLGSATKVVISKDSTLIVTDGSTREAVQKRVLQIQKLMENTEEKFPKKILNERIARLSGRIAILQVGAQTQVELKDRQLRIEDALNASKAAIEEGVVVGGGCCLLRLSTKVDAIKNVLENDEQMIGAEIFKRALCYPTKLIARNAGVNGSVVIDKVLINNDMNYGYNAATDHYEDLMKAGIMDPSKVVRCCLEHAASVAKTFLTSDAVVVDIKEPEPIPRRTPMPSSGKWVFSSADKIRVRSKHVGMEYSQVEGILRENCFQAQPHDVSATRQIGLEPPLRVNVLAQFVAMMNWLITSRLSSKVKDKEAKNL 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2968290 2974464 - Lag0040218.1 Lac13g0422 591578

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0422 695 FunFam 60 kDa chaperonin 260 441 - -
Lac13g0422 695 NCBIfam chaperonin GroEL 71 597 IPR001844 GO:0042026(InterPro)|GO:0140662(InterPro)
Lac13g0422 695 ProSitePatterns Chaperonins cpn60 signature. 473 484 IPR018370 GO:0005524(InterPro)|GO:0006457(InterPro)
Lac13g0422 695 Gene3D - 80 593 IPR027413 -
Lac13g0422 695 SUPERFAMILY GroEL equatorial domain-like 78 592 IPR027413 -
Lac13g0422 695 MobiDBLite consensus disorder prediction 1 66 - -
Lac13g0422 695 Gene3D GroEL 260 441 IPR027409 -
Lac13g0422 695 Gene3D - 206 478 IPR027410 -
Lac13g0422 695 PRINTS 60kDa chaperonin signature 336 359 IPR001844 GO:0042026(InterPro)|GO:0140662(InterPro)
Lac13g0422 695 PRINTS 60kDa chaperonin signature 466 487 IPR001844 GO:0042026(InterPro)|GO:0140662(InterPro)
Lac13g0422 695 PRINTS 60kDa chaperonin signature 96 122 IPR001844 GO:0042026(InterPro)|GO:0140662(InterPro)
Lac13g0422 695 PRINTS 60kDa chaperonin signature 152 179 IPR001844 GO:0042026(InterPro)|GO:0140662(InterPro)
Lac13g0422 695 PRINTS 60kDa chaperonin signature 418 443 IPR001844 GO:0042026(InterPro)|GO:0140662(InterPro)
Lac13g0422 695 CDD GroEL 71 594 IPR001844 GO:0042026(InterPro)|GO:0140662(InterPro)
Lac13g0422 695 SUPERFAMILY GroEL-intermediate domain like 209 272 IPR027410 -
Lac13g0422 695 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 69 598 IPR001844 GO:0006457(PANTHER)|GO:0009570(PANTHER)|GO:0042026(InterPro)|GO:0140662(InterPro)
Lac13g0422 695 Coils Coil 407 427 - -
Lac13g0422 695 SUPERFAMILY GroEL apical domain-like 253 444 IPR027409 -
Lac13g0422 695 Pfam TCP-1/cpn60 chaperonin family 92 595 IPR002423 GO:0005524(InterPro)
Lac13g0422 695 MobiDBLite consensus disorder prediction 28 42 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0422 K04077 - - csv:101209342 1005.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0422 Lac-Chr13:2968290 Lac3g1176 Lac-Chr3:9987873 2.40E-218 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1020 . . . . . Bpe10g00922 . Bma15g00101 . Cmo18g01097 . Cma18g01075 . Car18g00998 Sed06g1826 Cpe09g00248 . Bhi07g01420 Tan04g0938 Cmetu10g1844 Lac13g0422 Hepe10g1836 . . Cla05g02364 Cam05g2534 Cec05g2563 Cco05g2602 Clacu05g2529 Cmu05g2389 Cre05g2505 . . . . Lsi04g00325 Csa05g02544 . Cme10g00325 Blo06g00949 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001807 3 2 3 1 3 2 3 1 2 1 2 2 3 2 2 2 2 4 3 2 2 2 1 2 2 2 2 4 2 3 67