Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0423 ATGCTTCCTGGTGAAATCACTGGCATCCAGTTTTTTCCATCCGAAAACTCTTTTCAAATTCCTTCAAACATTGGCATGATGCAGAACAGCTTTCAGTCCCTCCATCATTTCAATGGATTTCTAGGCAACCTGCCGATGTCTCATGTCCCTCATCCCAGCCATGAATTCCTTGCACAATCCTCAAGTTTTAGCTACAACTCAACATCTGATGAAGCAGAGGAACAACAGAAGAGTATTATTGACGAGAGAAAGCAGAGGAGAATGATTTCTAATAGAGAATCAGCTCGTAGATCACGGATGAGAAAACAGAAGCACCTTGATGAGCTTTGGTCTCAGGTACTTCGGCTTCGCACTGAGAACCATAAACTGATAGACAAGTTGAACCATGTATCTGATTCCCATGAAAAGGTTCTTCTGGAGAATGCCAAGCTCAAGGAGGAAGCCTCTGATCTTCGTCAGATGCTCAGTGACCTGCAAATTGGAAGCCCTTACACTCCTTGCTTGAGTGACCTCGAAGATATTCCCTGCAACACTGCACATCTCAGAGCCGAATCTTCGTCGTGCCATTCCATCGCCAACTCCATAGACAACCTACTCCATTGA 603 44.78 MLPGEITGIQFFPSENSFQIPSNIGMMQNSFQSLHHFNGFLGNLPMSHVPHPSHEFLAQSSSFSYNSTSDEAEEQQKSIIDERKQRRMISNRESARRSRMRKQKHLDELWSQVLRLRTENHKLIDKLNHVSDSHEKVLLENAKLKEEASDLRQMLSDLQIGSPYTPCLSDLEDIPCNTAHLRAESSSCHSIANSIDNLLH 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2976756 2977358 - Lag0040219.1 Lac13g0423 591579

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0423 200 Pfam bZIP transcription factor 83 141 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac13g0423 200 Gene3D - 81 137 - -
Lac13g0423 200 PANTHER BASIC LEUCINE ZIPPER 43-RELATED 1 160 IPR044521 -
Lac13g0423 200 Coils Coil 134 161 - -
Lac13g0423 200 SMART brlzneu 79 143 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac13g0423 200 FunFam BZIP transcription factor 81 132 - -
Lac13g0423 200 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 86 101 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac13g0423 200 SUPERFAMILY Leucine zipper domain 83 133 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac13g0423 200 CDD bZIP_plant_GBF1 84 134 IPR045314 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac13g0423 200 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 81 144 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0423 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0423 Lac-Chr13:2976756 Lac6g0447 Lac-Chr6:3650867 9.20E-14 dispersed
Lac4g0453 Lac-Chr4:10317551 Lac13g0423 Lac-Chr13:2976756 3.20E-38 transposed
Lac8g2787 Lac-Chr8:45122080 Lac13g0423 Lac-Chr13:2976756 2.00E-44 transposed
Lac13g0423 Lac-Chr13:2976756 Lac4g2228 Lac-Chr4:41932107 5.70E-08 wgd
Lac13g0423 Lac-Chr13:2976756 Lac8g1152 Lac-Chr8:24637577 3.60E-18 wgd
Lac13g0423 Lac-Chr13:2976756 Lac8g2138 Lac-Chr8:39821872 3.60E-34 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1021 . Blo16g01070 . . Bpe13g01357 Bpe10g00923 Bma14g01627 Bma15g00100 Cmo04g01636 Cmo18g01096 Cma04g00989 Cma18g01074 Car04g01617 Car18g00997 Sed06g1827 Cpe09g00249 Cpe01g01390 Bhi07g01419 Tan04g0937 Cmetu09g1500 Lac13g0423 Hepe10g1837 . . Cla05g02362 Cam05g2533 Cec05g2562 Cco05g2601 Clacu05g2528 Cmu05g2388 Cre05g2504 . . . . Lsi04g00324 Csa05g02545 Chy10g01085 Cme10g00324 Blo06g00950 Blo11g00811 Bda07g01496 . Bpe11g01623 . . Bma06g00750 . . Cmo15g00873 . . . Car15g00216 Cpe13g00999 . . . . . . . . . . . . . . . . . Chy09g00171 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006441 4 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23149 PF00170 bZIP_1 2.60E-13 CL0018 Lac TF