Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0426 ATGGCAATCTCAAATCCCTCTCCAAGCCTCGTTTATGGACTGATGGTGCTCTCTGTTTTCTTTGCTCTGAGCCACAGCTTGTATGAGACAGGTGACCCCCCATTGACGTTGGATTACTATGCCAAAACTTGTCCCAATGTGTTGCAGGTTGTGAGGAAAGAGATGGAGTGTGCAGTGCTTTCTGACCCACGTAATGCAGCTTTTGTTGTCCGATTGCACTTCCACGACTGCTTTGTCCAGGGGTGCGACGGGTCGGTTCTGCTGGACGACACTATAACATTACAGGGAGAAAAAAAGGCTTCCACCAACATACACTCCCTCAAAGGCTTCAGAATCATTGACAGGATAAAGAACAGCCTTGAATCAGAATGTCCTGGGATCGTTTCTTGTGCAGATATACTCACTGTTGCAGCCAGGGATGCAGTGATTCTGGTAGGCGGCCCTTACTGGGAGGTTCCTCTTGGAAGAAAGGATTCCACAACTGCGAGTTATGAACTTGCAAGCACAAATCTTCCCTCTGCCAACGAGGGGCTTCTAAGCATCATTTCCAAGTTTCTTTATCAGGGTCTCTCTGTCACTGACATGGTAGCTCTATCAGGAGCGCACACCATTGGAATGGCGAGGTGCGAGAATTTCAGGGAAAGGATTTATGGCGATTTCGAAGCAACTTCAGTTGCTAACAACCCAATTTCCAAGTCATATCTTGAGAAATTAAGGTCTATTTGCCCCCCAGTTGGGAAAGCTGCAGAGAACAACATAACAGCAATGGACAATGTGACACCAGAGCTCTTTGACAACTCCTATTTCCACATCTTGATGAGAGGAGAAGGGCTTATGAATTCAGACCAGGAATTGTATTCCAGCCTTCTGGGCATGGAAACAAAGGCACTGGTGAAGAAATATGCTGCTGACCCACTTGCTTTCTTTCAGCAATTCTCTGATTCCATGGTCAAGTTGGGAAATATCACCAATTCTGATAGCTTTTTCACTGGGGAAGTTAGGAAAAACTGCAGGTTTATCAACACATGA 1029 46.06 MAISNPSPSLVYGLMVLSVFFALSHSLYETGDPPLTLDYYAKTCPNVLQVVRKEMECAVLSDPRNAAFVVRLHFHDCFVQGCDGSVLLDDTITLQGEKKASTNIHSLKGFRIIDRIKNSLESECPGIVSCADILTVAARDAVILVGGPYWEVPLGRKDSTTASYELASTNLPSANEGLLSIISKFLYQGLSVTDMVALSGAHTIGMARCENFRERIYGDFEATSVANNPISKSYLEKLRSICPPVGKAAENNITAMDNVTPELFDNSYFHILMRGEGLMNSDQELYSSLLGMETKALVKKYAADPLAFFQQFSDSMVKLGNITNSDSFFTGEVRKNCRFINT 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2996718 2999916 + Lag0040222.1 Lac13g0426 591582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0426 342 SUPERFAMILY Heme-dependent peroxidases 35 341 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac13g0426 342 PANTHER PEROXIDASE 72-RELATED 17 340 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac13g0426 342 Pfam Peroxidase 51 304 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac13g0426 342 PRINTS Haem peroxidase superfamily signature 146 158 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac13g0426 342 PRINTS Haem peroxidase superfamily signature 257 272 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac13g0426 342 PRINTS Haem peroxidase superfamily signature 194 209 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac13g0426 342 PRINTS Haem peroxidase superfamily signature 128 145 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac13g0426 342 PRINTS Haem peroxidase superfamily signature 66 80 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac13g0426 342 ProSiteProfiles Plant heme peroxidase family profile. 34 341 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac13g0426 342 CDD secretory_peroxidase 35 340 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lac13g0426 342 PRINTS Plant peroxidase signature 314 327 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac13g0426 342 PRINTS Plant peroxidase signature 255 270 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac13g0426 342 PRINTS Plant peroxidase signature 193 205 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac13g0426 342 PRINTS Plant peroxidase signature 271 288 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac13g0426 342 PRINTS Plant peroxidase signature 146 161 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac13g0426 342 PRINTS Plant peroxidase signature 44 63 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac13g0426 342 PRINTS Plant peroxidase signature 108 121 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac13g0426 342 PRINTS Plant peroxidase signature 127 137 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac13g0426 342 PRINTS Plant peroxidase signature 68 88 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac13g0426 342 FunFam Peroxidase 38 179 - -
Lac13g0426 342 Gene3D Peroxidase, domain 2 172 319 - -
Lac13g0426 342 ProSitePatterns Peroxidases proximal heme-ligand signature. 194 204 IPR019793 -
Lac13g0426 342 FunFam Peroxidase 172 319 - -
Lac13g0426 342 ProSitePatterns Peroxidases active site signature. 66 77 IPR019794 GO:0004601(InterPro)
Lac13g0426 342 Gene3D - 39 341 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0426 Lac-Chr13:2996718 Lac8g2856 Lac-Chr8:45719962 1.90E-75 dispersed
Lac13g0426 Lac-Chr13:2996718 Lac1g2959 Lac-Chr1:50399663 1.10E-75 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0426 K00430 - csv:101216779 594.349