Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0429 ATGGTTCCAATGGAAATTACAATACAAGTTTCCATTTTCTTCTTCTTCTTCTTGTGGAATTCTTCTGTAAATGGTTTGCTTACTGCAAAAGGTGTCAACTTTGAAGTGCAAGCCCTGATGGCCATTAAAGCTGCTCTGAAAGATCCACATTCTGTTCTTAATTGGGATGAAAACGCTGTGGATCCTTGTAGCTGGAACATGATCACTTGTTCTCCAGAGAAATTTGTCATCAGCTTAGGAGCTCCAAGTCAGAACTTGTCGGGTAGCCTGTCGCCGAGCATCGGAAATTTGACCAATCTTCAGTCAGTGCTTTTACAGAACAACAATATATCAGGAACAATCCCAATGGAGCTTGGGAACATACCAATGCTTGTCACTCTTGATCTTTCAAGCAATGGCTTCCATGGAGAGATTCCTACTTCTCTTTCACATCTTAAGACTCTGCAATATCTGAGGTTAAATAACAACAGTCTTTCTGGGGCTATTCCTTCATCTTTGGCCAATATGACTCAGCTGGCATTGTTGGACCTGTCTTTTAATAATCTGAGTGGCCCATTGCCCAAATTGTTGGCTAAAACCTACAACCTTGCTGGGAATTCGCTCATTTGCTCACCTGGGTCTGAGCATAGCTGCAATGGAACTGCACCACCACTCTTATTTGCAGTCAATACGCCTCAAAATCCACAGCCGTCTGGGAGATCCAAGGGCCACAAATTAGCCTTGGCTTTTGGCTCAAGTCTTGGATGCATTTTTCTGCTAACTGTTGGGTTTGGCTTCTTTATTTGGTGGAGGCAACGACACAACCAGCAGATTTTCTTTGATGTTAATGACCAACGATTTGAAGCAGTTTGCCTTGGGAACCTGAGGATTTTCCAGTTCAGAGAACTTCAAGCTGCCACAAACAACTTCAGCAGCAAAAACTTGGTGGGAAAAGGTGGGTTTGGGAATGTATACAAAGGGTACCTTCAAGATGGTACAGTTATAGCTGTGAAGAGGCTAAAAGATGGAAATGCGATGAGAGGAGAGATTCAATTTCAGACTGAAGTTGAGATGATCAGCCTAGCTGTGCACCGGAACCTCCTCCGTCTCTACGGGTTCTGTATGACAACCACAGAGAGACTGTTGGTTTACCCATATATGTCCAACGGCAGCGTTGCATCTCGTCTCAAAGCGAAGCCAGCTCTGGATTGGAGCACGAGGAAAAGAATAGCATTGGGAGCAGCAAGAGGCTTACTGTATTTGCATGAGCAGTGTGACCCCAAGATCATACACAGAGACGTCAAGGCTGCAAATATTTTGCTTGATGATTATTGCGAGGCTGTGGTGGGAGATTTTGGACTGGCAAAGCTGTTGGATCACAGAGATTCACATGTGACAACTGCTGTACGAGGAACTGTTGGCCATATAGCTCCTGAGTATCTATCCACTGGCCAATCCTCTGAGAAAACTGATGTCTTTGGATTTGGAATCCTTCTCCTTGAGTTGATCACTGGACAGAGAGCTCTTGAATTTGGAAAAGCTGCAAATCAGAAAGGAGCCATGCTTGATTGGGTAAAGAAAATTCACCAAGAAAAGAAGCTGGAAATATTAGTTGACAAGGATCTAAGGAACAATTACGACCGGATCGAGCTCGAAGAAATGGTTCAAGTAGCTCTCTTATGTACACAGTATCTTCCAACCACCAGACCTAAGATGTCTGAAGTGGTCAGAATGCTTGAAGGGGATGGACTTGCGGAGAAATGGGAAGCTTCTCAGAGGGCAGATGCAAACAGATGCAGAGTCAACGAGTTCTCCTCTTCGGAGCGATATTCAGATCTGACAGATGACTCTTCCCTGCTTGCACAAGCCATGGAACTTTCTGGACCAAGATGA 1872 44.44 MVPMEITIQVSIFFFFFLWNSSVNGLLTAKGVNFEVQALMAIKAALKDPHSVLNWDENAVDPCSWNMITCSPEKFVISLGAPSQNLSGSLSPSIGNLTNLQSVLLQNNNISGTIPMELGNIPMLVTLDLSSNGFHGEIPTSLSHLKTLQYLRLNNNSLSGAIPSSLANMTQLALLDLSFNNLSGPLPKLLAKTYNLAGNSLICSPGSEHSCNGTAPPLLFAVNTPQNPQPSGRSKGHKLALAFGSSLGCIFLLTVGFGFFIWWRQRHNQQIFFDVNDQRFEAVCLGNLRIFQFRELQAATNNFSSKNLVGKGGFGNVYKGYLQDGTVIAVKRLKDGNAMRGEIQFQTEVEMISLAVHRNLLRLYGFCMTTTERLLVYPYMSNGSVASRLKAKPALDWSTRKRIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGAMLDWVKKIHQEKKLEILVDKDLRNNYDRIELEEMVQVALLCTQYLPTTRPKMSEVVRMLEGDGLAEKWEASQRADANRCRVNEFSSSERYSDLTDDSSLLAQAMELSGPR 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3016255 3019285 - Lag0040225.1 Lac13g0429 591585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0429 623 Pfam Leucine rich repeat N-terminal domain 33 71 IPR013210 -
Lac13g0429 623 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 11 623 - -
Lac13g0429 623 ProSitePatterns Serine/Threonine protein kinases active-site signature. 422 434 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac13g0429 623 SUPERFAMILY L domain-like 35 204 - -
Lac13g0429 623 Gene3D Ribonuclease Inhibitor 32 213 IPR032675 -
Lac13g0429 623 Pfam Protein tyrosine and serine/threonine kinase 306 572 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac13g0429 623 ProSiteProfiles Protein kinase domain profile. 303 558 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac13g0429 623 Pfam Leucine Rich Repeat 124 145 IPR001611 GO:0005515(InterPro)
Lac13g0429 623 Pfam Leucine Rich Repeat 148 169 IPR001611 GO:0005515(InterPro)
Lac13g0429 623 Pfam Leucine Rich Repeat 99 120 IPR001611 GO:0005515(InterPro)
Lac13g0429 623 Pfam Leucine Rich Repeat 172 191 IPR001611 GO:0005515(InterPro)
Lac13g0429 623 ProSitePatterns Protein kinases ATP-binding region signature. 309 331 IPR017441 GO:0005524(InterPro)
Lac13g0429 623 FunFam Putative LRR receptor-like serine/threonine-protein kinase 32 213 - -
Lac13g0429 623 SMART serkin_6 303 558 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac13g0429 623 SUPERFAMILY Protein kinase-like (PK-like) 281 573 IPR011009 -
Lac13g0429 623 FunFam Somatic embryogenesis receptor kinase 1 272 379 - -
Lac13g0429 623 FunFam Somatic embryogenesis receptor-like kinase 1 380 592 - -
Lac13g0429 623 Gene3D Phosphorylase Kinase; domain 1 272 379 - -
Lac13g0429 623 Gene3D Transferase(Phosphotransferase) domain 1 380 592 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0429 Lac-Chr13:3016255 Lac6g1302 Lac-Chr6:13140525 2.00E-192 dispersed
Lac13g0429 Lac-Chr13:3016255 Lac13g0438 Lac-Chr13:3095235 7.40E-70 proximal
Lac3g0246 Lac-Chr3:1750316 Lac13g0429 Lac-Chr13:3016255 2.40E-180 transposed
Lac8g2791 Lac-Chr8:45141079 Lac13g0429 Lac-Chr13:3016255 3.60E-234 transposed
Lac13g0429 Lac-Chr13:3016255 Lac8g2136 Lac-Chr8:39798820 1.30E-236 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85848 PF00069 Pkinase 2.40E-44 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0429 - - - 0.0