Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac13g0429 | ATGGTTCCAATGGAAATTACAATACAAGTTTCCATTTTCTTCTTCTTCTTCTTGTGGAATTCTTCTGTAAATGGTTTGCTTACTGCAAAAGGTGTCAACTTTGAAGTGCAAGCCCTGATGGCCATTAAAGCTGCTCTGAAAGATCCACATTCTGTTCTTAATTGGGATGAAAACGCTGTGGATCCTTGTAGCTGGAACATGATCACTTGTTCTCCAGAGAAATTTGTCATCAGCTTAGGAGCTCCAAGTCAGAACTTGTCGGGTAGCCTGTCGCCGAGCATCGGAAATTTGACCAATCTTCAGTCAGTGCTTTTACAGAACAACAATATATCAGGAACAATCCCAATGGAGCTTGGGAACATACCAATGCTTGTCACTCTTGATCTTTCAAGCAATGGCTTCCATGGAGAGATTCCTACTTCTCTTTCACATCTTAAGACTCTGCAATATCTGAGGTTAAATAACAACAGTCTTTCTGGGGCTATTCCTTCATCTTTGGCCAATATGACTCAGCTGGCATTGTTGGACCTGTCTTTTAATAATCTGAGTGGCCCATTGCCCAAATTGTTGGCTAAAACCTACAACCTTGCTGGGAATTCGCTCATTTGCTCACCTGGGTCTGAGCATAGCTGCAATGGAACTGCACCACCACTCTTATTTGCAGTCAATACGCCTCAAAATCCACAGCCGTCTGGGAGATCCAAGGGCCACAAATTAGCCTTGGCTTTTGGCTCAAGTCTTGGATGCATTTTTCTGCTAACTGTTGGGTTTGGCTTCTTTATTTGGTGGAGGCAACGACACAACCAGCAGATTTTCTTTGATGTTAATGACCAACGATTTGAAGCAGTTTGCCTTGGGAACCTGAGGATTTTCCAGTTCAGAGAACTTCAAGCTGCCACAAACAACTTCAGCAGCAAAAACTTGGTGGGAAAAGGTGGGTTTGGGAATGTATACAAAGGGTACCTTCAAGATGGTACAGTTATAGCTGTGAAGAGGCTAAAAGATGGAAATGCGATGAGAGGAGAGATTCAATTTCAGACTGAAGTTGAGATGATCAGCCTAGCTGTGCACCGGAACCTCCTCCGTCTCTACGGGTTCTGTATGACAACCACAGAGAGACTGTTGGTTTACCCATATATGTCCAACGGCAGCGTTGCATCTCGTCTCAAAGCGAAGCCAGCTCTGGATTGGAGCACGAGGAAAAGAATAGCATTGGGAGCAGCAAGAGGCTTACTGTATTTGCATGAGCAGTGTGACCCCAAGATCATACACAGAGACGTCAAGGCTGCAAATATTTTGCTTGATGATTATTGCGAGGCTGTGGTGGGAGATTTTGGACTGGCAAAGCTGTTGGATCACAGAGATTCACATGTGACAACTGCTGTACGAGGAACTGTTGGCCATATAGCTCCTGAGTATCTATCCACTGGCCAATCCTCTGAGAAAACTGATGTCTTTGGATTTGGAATCCTTCTCCTTGAGTTGATCACTGGACAGAGAGCTCTTGAATTTGGAAAAGCTGCAAATCAGAAAGGAGCCATGCTTGATTGGGTAAAGAAAATTCACCAAGAAAAGAAGCTGGAAATATTAGTTGACAAGGATCTAAGGAACAATTACGACCGGATCGAGCTCGAAGAAATGGTTCAAGTAGCTCTCTTATGTACACAGTATCTTCCAACCACCAGACCTAAGATGTCTGAAGTGGTCAGAATGCTTGAAGGGGATGGACTTGCGGAGAAATGGGAAGCTTCTCAGAGGGCAGATGCAAACAGATGCAGAGTCAACGAGTTCTCCTCTTCGGAGCGATATTCAGATCTGACAGATGACTCTTCCCTGCTTGCACAAGCCATGGAACTTTCTGGACCAAGATGA | 1872 | 44.44 | MVPMEITIQVSIFFFFFLWNSSVNGLLTAKGVNFEVQALMAIKAALKDPHSVLNWDENAVDPCSWNMITCSPEKFVISLGAPSQNLSGSLSPSIGNLTNLQSVLLQNNNISGTIPMELGNIPMLVTLDLSSNGFHGEIPTSLSHLKTLQYLRLNNNSLSGAIPSSLANMTQLALLDLSFNNLSGPLPKLLAKTYNLAGNSLICSPGSEHSCNGTAPPLLFAVNTPQNPQPSGRSKGHKLALAFGSSLGCIFLLTVGFGFFIWWRQRHNQQIFFDVNDQRFEAVCLGNLRIFQFRELQAATNNFSSKNLVGKGGFGNVYKGYLQDGTVIAVKRLKDGNAMRGEIQFQTEVEMISLAVHRNLLRLYGFCMTTTERLLVYPYMSNGSVASRLKAKPALDWSTRKRIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGAMLDWVKKIHQEKKLEILVDKDLRNNYDRIELEEMVQVALLCTQYLPTTRPKMSEVVRMLEGDGLAEKWEASQRADANRCRVNEFSSSERYSDLTDDSSLLAQAMELSGPR | 623 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 3016255 | 3019285 | - | Lag0040225.1 | Lac13g0429 | 591585 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac13g0429 | 623 | Pfam | Leucine rich repeat N-terminal domain | 33 | 71 | IPR013210 | - | |
Lac13g0429 | 623 | PANTHER | SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 | 11 | 623 | - | - | |
Lac13g0429 | 623 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 422 | 434 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac13g0429 | 623 | SUPERFAMILY | L domain-like | 35 | 204 | - | - | |
Lac13g0429 | 623 | Gene3D | Ribonuclease Inhibitor | 32 | 213 | IPR032675 | - | |
Lac13g0429 | 623 | Pfam | Protein tyrosine and serine/threonine kinase | 306 | 572 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac13g0429 | 623 | ProSiteProfiles | Protein kinase domain profile. | 303 | 558 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac13g0429 | 623 | Pfam | Leucine Rich Repeat | 124 | 145 | IPR001611 | GO:0005515(InterPro) | |
Lac13g0429 | 623 | Pfam | Leucine Rich Repeat | 148 | 169 | IPR001611 | GO:0005515(InterPro) | |
Lac13g0429 | 623 | Pfam | Leucine Rich Repeat | 99 | 120 | IPR001611 | GO:0005515(InterPro) | |
Lac13g0429 | 623 | Pfam | Leucine Rich Repeat | 172 | 191 | IPR001611 | GO:0005515(InterPro) | |
Lac13g0429 | 623 | ProSitePatterns | Protein kinases ATP-binding region signature. | 309 | 331 | IPR017441 | GO:0005524(InterPro) | |
Lac13g0429 | 623 | FunFam | Putative LRR receptor-like serine/threonine-protein kinase | 32 | 213 | - | - | |
Lac13g0429 | 623 | SMART | serkin_6 | 303 | 558 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac13g0429 | 623 | SUPERFAMILY | Protein kinase-like (PK-like) | 281 | 573 | IPR011009 | - | |
Lac13g0429 | 623 | FunFam | Somatic embryogenesis receptor kinase 1 | 272 | 379 | - | - | |
Lac13g0429 | 623 | FunFam | Somatic embryogenesis receptor-like kinase 1 | 380 | 592 | - | - | |
Lac13g0429 | 623 | Gene3D | Phosphorylase Kinase; domain 1 | 272 | 379 | - | - | |
Lac13g0429 | 623 | Gene3D | Transferase(Phosphotransferase) domain 1 | 380 | 592 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac13g0429 | Lac-Chr13:3016255 | Lac6g1302 | Lac-Chr6:13140525 | 2.00E-192 | dispersed | |
Lac13g0429 | Lac-Chr13:3016255 | Lac13g0438 | Lac-Chr13:3095235 | 7.40E-70 | proximal | |
Lac3g0246 | Lac-Chr3:1750316 | Lac13g0429 | Lac-Chr13:3016255 | 2.40E-180 | transposed | |
Lac8g2791 | Lac-Chr8:45141079 | Lac13g0429 | Lac-Chr13:3016255 | 3.60E-234 | transposed | |
Lac13g0429 | Lac-Chr13:3016255 | Lac8g2136 | Lac-Chr8:39798820 | 1.30E-236 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
85848 | PF00069 | Pkinase | 2.40E-44 | CL0016 | Lac | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac13g0429 | - | - | - | 0.0 |