Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0435 ATGTACGTGACGAGGCCGCTTTCTCTGTACAGAAAATCTCCGTCGTCGTTGTCTCTGGCGCCGCCGGAGGGTCCGAGCTCGGGCATTCTGGTGATCCAAGACGAAGAAGCTGCGGAGTCGAGATGGTGCTGTGGATTGTTCAAGATGAAGGAGCGTGTGAACGAAATGCCCTTCCCTCAGAACAAGATACTGCGGCTTACGCACGCGGCCGATGCAGGGGAGTATGAGTATTCCGATTCGGTATACGCAGTGCTTATTCCAGTTTTGAATCAGCCGCTCTCTTCCAATCAATATTATATCATCAATTCCCGTGGCTCTCGAGCAGGGCTAGCATGCACAAGTTCAAAGGAAGAAGACAACACAAGCCGTGGCTGCTGCTACAGCGTTCCCGATCCACCACCACAGCTCTTCGACCCAAAAAACACATATCAACAATTCCAAATCAGCGATTACATATACTGTGGAGGCAACAACGGCTTCATCTCCAAGTCCATGGCTCCGGACGGGGTTCCTCCGGAACGCCTGAGCCGCAAGGGCTGGAGACCTTACATCCAACAAACTCTCAATAACTTCGAGCCCACCGAAGCGCTCGGCCTCGACCCATCACTCCGGGCCCGCCTCCCAGAGCTCAACTCCGAGCCAGTGGTGGTTGGGAAATGGTACTGCCCTTTCATTTTCATTCGGGAAGGAGAGGTTGGTCCTCAGATGAGCAGCTCGCCGTACTACGAAATGACGCTTCAGCAGAAATGGGTTGAGATATTTGGACGTGAGAGGACGAACAAGAAAGGCCAAAATGGCGTGGATGTGGATGTCTTTGTGGACAGGGAAGTGGTTTCAGTTGCCGGTGGGACGCCCACGAGCAGAAATGTTGTTGATGGTGTGGTGTGGTTTGGGCCGTCGAAGGTTGGGCTGAGCTTGGCGGTTGTGGAGAGAATGAAATGGGAGGAGCAGAGAGCTGGATTTGAATGGGTCGAAGAATGGCAAGAAAAGAAAGTGAAGGTGAAGAGAAGAGAGGAGTTTAAGAAGATGGGTCAGTGGAAAAGATTTGGGTGTTATGTGTTGGTTGAGAGGTTTGTGCTTAAGAGAATGGATGGAAGTTTGGTTCTTGCTTGGGAATTTAGGCACACTCATCAACAATATGTGCTTGATGCTTCAAGCAAGCTTTTTGCAGAACCCGCCTGGCAATCAATCATCATCCTACGCGCGCTTTTTACAGCCCACACTTGGAAGCAAGCGAGTGAACGCTGCGGCAGTCGCAGAGCCAGAGCCGACCAGAGTGAACTCCGAAACGGCGCAACAAACTCCGAAGCCTTCGCTCGGCGCTCGAAGATGGCGAATGTCATTGATCAGGATCAACAGTGGCTTCTCAATTGCTTGTCGGCCACTCTCGATCCCAACCAGGAGGTTCGCTCATTTGCAGAGGCCTCGCTGAATCAGGCATCTCTCCAACCAGGTTTTGGAGTTGCATTATCCAAAGTTGCTGCCAATAGGGAGCTTCCTGTCGGGTTGCGCCAGATATCCTTTGTTGTCATTGCTATTTAG 1542 51.75 MYVTRPLSLYRKSPSSLSLAPPEGPSSGILVIQDEEAAESRWCCGLFKMKERVNEMPFPQNKILRLTHAADAGEYEYSDSVYAVLIPVLNQPLSSNQYYIINSRGSRAGLACTSSKEEDNTSRGCCYSVPDPPPQLFDPKNTYQQFQISDYIYCGGNNGFISKSMAPDGVPPERLSRKGWRPYIQQTLNNFEPTEALGLDPSLRARLPELNSEPVVVGKWYCPFIFIREGEVGPQMSSSPYYEMTLQQKWVEIFGRERTNKKGQNGVDVDVFVDREVVSVAGGTPTSRNVVDGVVWFGPSKVGLSLAVVERMKWEEQRAGFEWVEEWQEKKVKVKRREEFKKMGQWKRFGCYVLVERFVLKRMDGSLVLAWEFRHTHQQYVLDASSKLFAEPAWQSIIILRALFTAHTWKQASERCGSRRARADQSELRNGATNSEAFARRSKMANVIDQDQQWLLNCLSATLDPNQEVRSFAEASLNQASLQPGFGVALSKVAANRELPVGLRQISFVVIAI 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3055773 3061660 + Lag0040231.1 Lac13g0435 591591

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0435 513 Pfam Protein of unknown function (DUF1262) 23 126 IPR010683 -
Lac13g0435 513 SUPERFAMILY ARM repeat 450 510 IPR016024 -
Lac13g0435 513 Gene3D - 450 511 IPR011989 -
Lac13g0435 513 PANTHER OS08G0413200 PROTEIN 1 378 - -
Lac13g0435 513 ProSiteProfiles Importin-beta N-terminal domain profile. 473 513 IPR001494 GO:0006886(InterPro)|GO:0031267(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0435 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0494 Lac-Chr12:5382651 Lac13g0435 Lac-Chr13:3055773 1.00E-36 dispersed
Lac13g0400 Lac-Chr13:2839338 Lac13g0435 Lac-Chr13:3055773 4.30E-93 dispersed
Lac13g0401 Lac-Chr13:2842105 Lac13g0435 Lac-Chr13:3055773 9.00E-19 dispersed
Lac13g0402 Lac-Chr13:2842462 Lac13g0435 Lac-Chr13:3055773 2.80E-41 dispersed
Lac13g0435 Lac-Chr13:3055773 Lac13g1658 Lac-Chr13:18211994 1.10E-18 dispersed
Lac13g0434 Lac-Chr13:3043527 Lac13g0435 Lac-Chr13:3055773 1.80E-73 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g206 . . . . . . . . . . . Cma18g01064 . . Sed06g1838 . . Bhi07g01399 Tan04g0928 Cmetu10g1556 Lac13g0435 Hepe10g1847 . . . . . . . . . . . . . Lsi04g00314 Csa05g02556 Chy10g01096 Cme10g00316 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001349 1 3 0 0 1 2 3 1 3 4 1 2 2 3 3 3 2 2 2 1 3 6 2 4 4 3 3 6 3 2 75