Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0436 ATGTACCTAGCTGCAGTCCTTCTAAAGCAGTTCATCAAAAAACACTGGCAGGAGGGTGAGGAATTGTTTGAGCATCCCGCTGTTTCTAATGACGAAAAGGCAGTAATTCGCAATCTACTTTTATTAACGTTGGATGATTCCCATAGGAAAATCTGTACAGCAATTAGTATGGCTGTGGCATCAATTGCGATATATGATTGGCCAGAGGAATGGCCCGAGCTATTGCCTTACCTCTTAAATTTGATGAATAATCGAGTTAATATGAATGGTGTGCATGGAGGTCTAAGGTGCTTGGCTCTACTCTCTGGGGAGTTGGACTGTGAAATGATTCCAAAACTAGTACCTGCTTTGTTCCCTCATTTGCTTTCAATTGTTTCATCCCCAGAGATGTATGACAAGTATTTGCGGATGAAGGCCCTGTCAATTGTTTATTCTTGTATATCCATGTTAGGGGTAATGAGTGGTGTGTATAAGGAAGAAACCAGTGCGTTGGTAATATCCATGCTAAAACCCTGGATGGAACAGTTCTCTATCATATTAGGTCATCCTGTGCATTCTGAAGATCCTGATGACTGGAGCATTAGAATGGAGGTCTTAAAGTGCATGAACCAGTTCTTTCAAAATTTCCCTAGTCTTGCAGAAAGTGATATTACAATTATTTTGCACTCAGTGTGGCAGACGTTTGTGTCATCTCTTGAAGTATATAAACGGTCATCCATTGAAGGTGTAGAAGATCCATATGAAGGAAGCTATGATTCTGATGGTGCTGACAGAAGTCTTGATTCTTTTGTCATCCAGTTGTTCGAATTTCTTTTAACCATAGTTGGAAGTTCAAAACTGGTGAAGGTTGTGAAGAACAATGTAGGGGAGCTGGTTTATTACACAATTGCTTTTCTACAAATTACGGAGCAACAGATTCATTTGTGGTCAATGGATTCCAATCGATTTGTTGCGGATGAAGATGATGGCACCTTTAGCTGTCGTGTTTCAGGTGCACTTTTACTTGAAGAAATTGTTGGAAGTTGTGGTCTAGATGGAATCAATGCCATCATAGATGCTGCAAAAAGTCGCTTCAGTGAGTCTAAAAGAGAAAAGGCTTCTGGTTCTTCAGTTTGGTGGAGAATCAGGGAGGCTGTTCTATTCGCTTTAGCTTCTTTGGCAGAACAGTTGATTGAAGTAGAGGTATCCAAATAA 1194 40.37 MYLAAVLLKQFIKKHWQEGEELFEHPAVSNDEKAVIRNLLLLTLDDSHRKICTAISMAVASIAIYDWPEEWPELLPYLLNLMNNRVNMNGVHGGLRCLALLSGELDCEMIPKLVPALFPHLLSIVSSPEMYDKYLRMKALSIVYSCISMLGVMSGVYKEETSALVISMLKPWMEQFSIILGHPVHSEDPDDWSIRMEVLKCMNQFFQNFPSLAESDITIILHSVWQTFVSSLEVYKRSSIEGVEDPYEGSYDSDGADRSLDSFVIQLFEFLLTIVGSSKLVKVVKNNVGELVYYTIAFLQITEQQIHLWSMDSNRFVADEDDGTFSCRVSGALLLEEIVGSCGLDGINAIIDAAKSRFSESKREKASGSSVWWRIREAVLFALASLAEQLIEVEVSK 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3061869 3069802 + Lag0040232.1 Lac13g0436 591592

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0436 397 PANTHER IMPORTIN-7, 8, 11 3 393 - GO:0005635(PANTHER)|GO:0005829(PANTHER)|GO:0006606(PANTHER)
Lac13g0436 397 Pfam Exportin 1-like protein 50 105 IPR013598 -
Lac13g0436 397 ProSiteProfiles Importin-beta N-terminal domain profile. 1 46 IPR001494 GO:0006886(InterPro)|GO:0031267(InterPro)
Lac13g0436 397 SUPERFAMILY ARM repeat 2 393 IPR016024 -
Lac13g0436 397 Gene3D - 2 396 IPR011989 -
Lac13g0436 397 Pfam Importin-beta N-terminal domain 2 44 IPR001494 GO:0006886(InterPro)|GO:0031267(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0436 K20224 - - csv:101216055 704.131
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0436 Lac-Chr13:3061869 Lac5g1240 Lac-Chr5:23019515 5.70E-07 dispersed
Lac13g0436 Lac-Chr13:3061869 Lac2g1733 Lac-Chr2:16019796 2.20E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g207 . . . . . . Bma14g01684 . Cmo04g01627 Cmo18g01084 . . Car04g01606 . Sed07g1969 . Cpe01g01382 Bhi07g01398 Tan04g0927 Cmetu10g0461 Lac13g0436 Hepe10g1849 . . Cla05g02354 Cam05g2523 Cec05g2551 Cco05g2591 Clacu05g2518 Cmu05g2380 Cre05g2495 . . . . Lsi04g00312 Csa05g02557 Chy10g01097 Cme10g00314 . Blo11g00817 Bda07g01513 . Bpe11g01676 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011083 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 30