Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0438 ATGGCGGCAGTATCACCGGCGCCTAATTCATCTCCGTCGCCGGCTTCTCCTTCCTCACCATCTCCGCCGCCTCCCGTCGCATCTACTCCGCCGCCCAATACTCCGTCACCGTCACCGCCACAACCTCCTTCTCCGCCGCCGCAACAATCGCCTCCTCCGAATCCTTCTGGCCCTACAACTCCTACTCCGTCACCACCAGGTCCGTCGTCTCCTCCTCCGCCGTCTCGTCAACCATCTGCTACTCCACCACCGCCTGCTTCTGGAACTCCGCCGCCACAAACACCCGCATTGTCTCCTCCGCCGGCTCGAACCATTTCGCCGGCAACTCCACCTCCAACTCCGTCAAATGCTCCGCCCCCATCAACACCAGACTCTCCACCACCATCAGCAACCCCACCAGTAAGCTCTACCCCACCAACGCCATCTGACCCCCCACCAAATTCACCTCCACCTCCTGCAGCAGAGCCTCCTCGAACCCCTCCTCCACAGTCATCAAACCCACCTCCGCCGCTGTCGCCACCACCGCCACAAGCAAACCCCCCGGATAATCCATCGCCGCCGCCACAGCCCACAAACCCACCTGAGAATCCACCACCCACACCACCATCTTCACCTCCAGAAACTTCACCTCCATCACCAGCGTCAATACCTCCTAGAAATGCTCCTCCTCCTCCCAGTGAGCCCCAACCTTCAAGCCCTCCTCCCAAGCCATTGCCGCCCACATCAATTGCGCCACCTCCGCCGTCACTTGTTTCTCCTCCAACATTGCCGTCAGGAAATCGCACGGACGATGGTTCTGTTCCCGATAGTGGAGTAAACTCGAACTCCAACAACAATGGAGGGATTAATACTGGGGGTGTGATTGCAATTGGTGTAGTGGCTGGAATTGTTGTGCTTTCCATAGTTGGGTTTGTTGTATGGTATATCAGGAAGCCAAGGAAAAATGATTCTGGACGTGGGGGTTACATTATGCCATCCTCTCTGGGCTCTTCACCTAAGTCAGAAGCATCCCTTATGAAGGTCCATTCCACACTTCATCAAGACAGACAGGCTAGTGGCAGTGGTGGCAGTGGTGGCAGTGGTGGAATATACACTCCAAAAGAGCTTGGTGGGTTGGGCAATTCGAGGTCGTTGTTTACATATGAAGAACTCTTCAAAGCAACAAATGCATTTTCTGCTCAGAATCTTTTGGGAGAAGGTGGATTCGGTTCTGTTTATAAAGGATATCTACCAGATGGAAGAGAAGTTGCAGTGAAGGAGCTGAAGATTGGTGGTAGTCAGGGTGAGCAGGAATTCAAAGCTGAAGTTGAGATTATTGGTCGTGTACACCACCGCCATTTGGTTTCTCTTGTGGGCTACTGCATTTCAGAGCATCAAAGGTTGCTGGTCTATGATTATGTTCCTAACAATTCCCTTTACTACCATCTTCATGTTAAAGGGGAGGGTGAGCTGGTTCTAGACTGGGCAAAACGCATCAAGATTGCAGCTGGTGCAGCCCGGGGAATTGCGTATCTTCACGAAGACTGCCATCCTCGAATTATCCACCGAGATATCAAATCTTCAAACATTCTTCTAGATGAAAATTTTGAGGCTCGGGTTTCAGACTTTGGGCTAGCTAAACTAGCTCTCGACGCACAAACTCATATAACCACCCGTGTTGTTGGAACTTTCGGGTATGTTGCCCCTGAATATGCATCAAGTGGAAAGTTAACTGAGAGATCAGATGTATATTCTTTTGGAGTGGTGCTGCTCGAGCTGATTACTGGTAGGAAGGCTGTGGATTCATCCCAACCAATGGGGGACGAAAGCCTTGTCGAATGGGCTCGGCCTTTACTAAACCATGCACTCGACGGCCAAGATTTCGAAAGATTAGTGGACCCGAGGCTTGAAAGGAACTATGTTGAGAGTGAAATGTTGAAGATGATAGGAATAGCTGCTGCTTGTGTGCGGCATGCCTCTGCCAAGAGACCGCAGATGGGACAGGTTGTTAGAGCTTTTGATAGTTTAGCCACCACAGATTTAAGCAACGGAATGAGATTCGGGGAGAGTCAAGCTTTCGACTCCGGTCAACAGTCTGCCGAAATTAGATTTTTCCGAATGCTGGCATTTGGTAACCAAGATTACAGTTCAGATTTTTATAGCCAAGCTAGCTCAAATGCCTGA 2163 51.18 MAAVSPAPNSSPSPASPSSPSPPPPVASTPPPNTPSPSPPQPPSPPPQQSPPPNPSGPTTPTPSPPGPSSPPPPSRQPSATPPPPASGTPPPQTPALSPPPARTISPATPPPTPSNAPPPSTPDSPPPSATPPVSSTPPTPSDPPPNSPPPPAAEPPRTPPPQSSNPPPPLSPPPPQANPPDNPSPPPQPTNPPENPPPTPPSSPPETSPPSPASIPPRNAPPPPSEPQPSSPPPKPLPPTSIAPPPPSLVSPPTLPSGNRTDDGSVPDSGVNSNSNNNGGINTGGVIAIGVVAGIVVLSIVGFVVWYIRKPRKNDSGRGGYIMPSSLGSSPKSEASLMKVHSTLHQDRQASGSGGSGGSGGIYTPKELGGLGNSRSLFTYEELFKATNAFSAQNLLGEGGFGSVYKGYLPDGREVAVKELKIGGSQGEQEFKAEVEIIGRVHHRHLVSLVGYCISEHQRLLVYDYVPNNSLYYHLHVKGEGELVLDWAKRIKIAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDENFEARVSDFGLAKLALDAQTHITTRVVGTFGYVAPEYASSGKLTERSDVYSFGVVLLELITGRKAVDSSQPMGDESLVEWARPLLNHALDGQDFERLVDPRLERNYVESEMLKMIGIAAACVRHASAKRPQMGQVVRAFDSLATTDLSNGMRFGESQAFDSGQQSAEIRFFRMLAFGNQDYSSDFYSQASSNA 720
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3095235 3099022 + Lag0040234.1 Lac13g0438 591594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0438 720 MobiDBLite consensus disorder prediction 255 280 - -
Lac13g0438 720 Gene3D Phosphorylase Kinase; domain 1 367 466 - -
Lac13g0438 720 FunFam Proline-rich receptor-like protein kinase PERK8 364 466 - -
Lac13g0438 720 MobiDBLite consensus disorder prediction 1 280 - -
Lac13g0438 720 SMART serkin_6 391 670 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac13g0438 720 MobiDBLite consensus disorder prediction 10 254 - -
Lac13g0438 720 ProSiteProfiles Protein kinase domain profile. 391 669 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac13g0438 720 MobiDBLite consensus disorder prediction 327 359 - -
Lac13g0438 720 PRINTS Proline rich extensin signature 6 22 - -
Lac13g0438 720 PRINTS Proline rich extensin signature 47 72 - -
Lac13g0438 720 PRINTS Proline rich extensin signature 27 44 - -
Lac13g0438 720 FunFam proline-rich receptor-like protein kinase PERK8 467 680 - -
Lac13g0438 720 Pfam Protein kinase domain 393 600 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac13g0438 720 SUPERFAMILY Protein kinase-like (PK-like) 374 664 IPR011009 -
Lac13g0438 720 Gene3D Transferase(Phosphotransferase) domain 1 467 683 - -
Lac13g0438 720 CDD STKc_IRAK 397 669 - -
Lac13g0438 720 ProSitePatterns Protein kinases ATP-binding region signature. 397 419 IPR017441 GO:0005524(InterPro)
Lac13g0438 720 ProSitePatterns Serine/Threonine protein kinases active-site signature. 513 525 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac13g0438 720 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 265 698 IPR047117 -
Lac13g0438 720 MobiDBLite consensus disorder prediction 318 361 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0630 Lac-Chr10:4845071 Lac13g0438 Lac-Chr13:3095235 2.70E-56 dispersed
Lac13g0438 Lac-Chr13:3095235 Lac8g2805 Lac-Chr8:45266396 2.30E-147 dispersed
Lac1g3362 Lac-Chr1:53242068 Lac13g0438 Lac-Chr13:3095235 2.30E-41 dispersed
Lac7g0330 Lac-Chr7:2557477 Lac13g0438 Lac-Chr13:3095235 8.80E-48 dispersed
Lac8g2212 Lac-Chr8:40451088 Lac13g0438 Lac-Chr13:3095235 1.30E-70 dispersed
Lac9g1678 Lac-Chr9:36318465 Lac13g0438 Lac-Chr13:3095235 2.10E-40 dispersed
Lac9g1864 Lac-Chr9:38414966 Lac13g0438 Lac-Chr13:3095235 1.70E-57 dispersed
Lac13g0429 Lac-Chr13:3016255 Lac13g0438 Lac-Chr13:3095235 7.40E-70 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85849 PF00069 Pkinase 4.50E-44 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0438 - - - 0.0