Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0439 ATGGGCGGCGGCAGAAGGAGAAAGCTGCATTTTAGCAAGATCTACTCGTTTGCATGTGGGAAAGCTTCTTTAAAGGCTGACCATTCACAAATTGGGGGTCCGGGGTTTTCTCGAGTTGTTTTCTGTAATGAACCAGGGTGTTTTGAGGCAGAAATTCGTAACTACATTGACAATTATGTTAGTACTACCAAGTATACTTTAGCTACTTTCCTGCCTAAGTCCTTGTTTGAGCAATTCAGGAGGGTGGCCAATTTCTACTTTTTAGTCAGTGGGATCCTTGCTTTTACTCCCCTTGCTCCTTACACGGCTGTCAGTGCGATTATCCCTCTTATTCTTGTCATTTCGGCGACAATGATCAAAGAAGGGATCGAAGATTTGAGGCGAAAAAAACAGGATATTGAGATTAACAATAGAAAGGTTAAAGCACATCAAGGTGGTGGAGTTTTTGCTTATACAGAGTGGAAGAATCTGAGGGTGGGTAATGTAGTGAGAGTGGAGAAGGATGAATTCTTTCCAGCAGATATCATCTTGCTTTCATCCAGTTATGAGGATGCAATCTGCTATGTTGAGACAATGAACCTTGATGGTGAGACAAATTTGAAACTAAAACAGGCATTGGAGGTAACTTCGCATATGAGCGAGGATTCTATGTTCAACAACTTTAAGGCTACAATAAAATGTGAGGACCCAAATGCAAATTTATATTCTTTTGTTGGTAGTATGGAGTTGGAAGAGCAACAATATCCTCTATCTTCTCAACAACTACTCCTTCGAGACTCTAAACTCCGGAATACGGATTATATATATGGGGTTGTTGTCTTTACTGGTCGCGACACGAAGGTTATTCAAAATTCTACTGACCCACCTTCAAAGAGAAGCAAAGTTGAGAGGAAGATGGATAAAATTATATATTTTTTGTTCTGTCTTCTATTTTTGCTTGCTCTTATAGGATCTATATTTTTTGGCTTTGTGACTGAAGATGATTTGGAAAATGGGAGAATGAAGAGATGGTATCTCAGGCCTGATGATGCTGAAGTTTTCTTTGATCCAAAAAGGTCTCCAATGGCTGCAATTTTCCATTTTCTTACCGCACTGATGTTGTATAACTACTTCATTCCAATCTCACTGTATGTATCAATAGAAATCGTCAAAGTTCTTCAGAGCATATTTATCAATCAAGATATTAATATGTACTATGAAGAAGCTGATAAACCTGCACGTGCTCGCACCTCAAATTTGAATGAAGAACTTGGTCAAGTCGATACTATACTTTCTGACAAGACTGGAACTCTGACCTGTAATTCAATGGAGTTCATTAAGTGTTCAGTGGCAGGGAGGGGTTATGGGCGTGGTTTCACAGAAGTAGAAAGGGCCATAGGTAGACAAAAAGATTCACCATTGCATGTAGCTGTAAATGGGGGGAATCACCAAGAGGATGTCACTAATAAAACTTCACATATCAAGGGCTTTAATTTTAAGGATGATAGGATTATGAATGGGAACTGGGTTAATGAGCCTCATGCAAATGTCATCCAAATGTTTTTCCGTCTTCTTGCAACTTGTCATACGGCAATACCTGAAATCCATGAGGACAGCAAAGAAGTTACTTATGAGGCTGAATCACCGGATGAAGCAGCATTTGTGATTGCAGCTAGGGAATTCGGCTTTGAGTTCTACAAAAGAACACAGACAAGCATATCACTGCATGAGTTTGATCCTTCATTGGGCAAGAAAGTTGATAGGACATATCGACTGCTGCATGTTTTGGAGTTTAATAGTTCAAGAAAGCGCATGTCTGTCATAGTAAGAAACGAGGAGGAGAAAATATTATTACTCTGTAAAGGTGCAGACAGTGTCATGTTTGAAAGACTTGGAAAGAATGGAAGGGAGTTTGAAGAGGAGACCAAGGAACATGTCAATGAGTATGCTGATGCAGGGTTGAGGACTTTGATACTTGCCTATCGTGAACTCGAAGAGGAAGAATACCAGGAATTTGATGACAAGTTCACTAAGGCCAAAAGTTCAGTCAGTGCAGATCGAGAATCATTGATTGATAAAGTAACCGACAAAATGGAGAGGAATCTAATTCTACTTGGTGCCACTGCTGTTGAGGACAAGCTCCAAAATGGGGTTCCTGACTGCATCGACAAGCTTGCTCAGGCAGGAATAAAGATTTGGGTTTTGACTGGGGACAAAATGGAGACCGCCATAAATATTGGTTTCGCCTGTAGCTTACTAAGACAAGATATGAAGCAGATTGTTATTACTCTTGAGACATCAGAAATTCTGGCCCTAGAAAAGACAGGGGATAAGGCTTCTATCACCAAGGCATCAATGCAATGCGTCTGTGATCAGATTACTCGAGGGAGAGCTCAGCTTACTTCATCAAGTGGGCTATCTGAAGCATTTGCATTAATTATTGATGGAAAATCACTTTCTTATGCTTTAGAGGACAGTATGAAGGCGTCGTTTCTCGAGCTTGCGATATGTTGTGCTTCTGTTATTTGCTGCCGTTCATCTCCAAAACAGAAGGCACTGGTAACAAGGTTAGTCAAATTTGGAACACGGAAAACAACTTTAGCCATCGGTGACGGTGCCAATGATGTAGGAATGCTTCAAGAAGCGGATATTGGAGTCGGAATTAGTGGTGCCGAAGGAATGCAGGCCGTTATGTCGAGTGATGTTGCAATTGCACAGTTTAAATATTTAGAGCGCCTGCTTCTTGTGCATGGACATTGGTGCTACAGAAGGATATCATCAATGATTTGCTACTTTTTCTATAAGAATATTACTTTTGGTTTTACCATATTCTTATACGAAGCATTCACATCATTCTCTGGGCAAACTGCATATAATGATTGGTTTTTATCACTTTACAATGTTTTCTTCTCGTCGCTTCCAGTGGTAGCTTTGGGAGTTTTTGATCAGGACGTATCTGCAAGGTTCTGCCTCCAGTTTCCTCTCTTATACCAACAAGGGGCGCAGAATGTTCTTTTCAGCTGGCTCCGAATACTCAGTTGGATGTTTAATGGATTGTGCAGTGCCGTGATCATCTTCTTCCTATGCACAAGAGCACTCCAGCATCAGGCGTTCAACTCCGACGGGAAAACTGCAGGTCGGGACATTCTAGGTGCAACAATGTACTCTTGTGTTGTTTGGGTCGTGAACTTGCAAATGGCGCTCGCTGTTAGTTACTTCACCTTGATACAACATCTTTTCATCTGGGGTTCGATATCGATTTGGTACATTTTTCTACTGATTTATGGGTCCATGACCCCCACCTTTTCAACCAATGCTTACAAGATCTTCATTGAAGTCCTTGCCCCTGGCCCTTCCTACTGGCTTGTGCTTCTCTTTGTGGTGACCACAACACTCATTCCTTACTTCTCCTACTCAGCATTACAGATGAGGTTCTTTCCCATGTTTCATCAAATGATTTTATGGATTAGGAATGAAGGACAACTAGACAACCAAGAGTACTGCGATATTTTGCGGAACTACCGCACATTCCGATCAACAAGCGTGGGTTCCACAGCACGGTTAGCAGCCAAAAGGAACAACTCAAAGGAGAGAAACAAGACTGCTATTTGA 3591 41.24 MGGGRRRKLHFSKIYSFACGKASLKADHSQIGGPGFSRVVFCNEPGCFEAEIRNYIDNYVSTTKYTLATFLPKSLFEQFRRVANFYFLVSGILAFTPLAPYTAVSAIIPLILVISATMIKEGIEDLRRKKQDIEINNRKVKAHQGGGVFAYTEWKNLRVGNVVRVEKDEFFPADIILLSSSYEDAICYVETMNLDGETNLKLKQALEVTSHMSEDSMFNNFKATIKCEDPNANLYSFVGSMELEEQQYPLSSQQLLLRDSKLRNTDYIYGVVVFTGRDTKVIQNSTDPPSKRSKVERKMDKIIYFLFCLLFLLALIGSIFFGFVTEDDLENGRMKRWYLRPDDAEVFFDPKRSPMAAIFHFLTALMLYNYFIPISLYVSIEIVKVLQSIFINQDINMYYEEADKPARARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSVAGRGYGRGFTEVERAIGRQKDSPLHVAVNGGNHQEDVTNKTSHIKGFNFKDDRIMNGNWVNEPHANVIQMFFRLLATCHTAIPEIHEDSKEVTYEAESPDEAAFVIAAREFGFEFYKRTQTSISLHEFDPSLGKKVDRTYRLLHVLEFNSSRKRMSVIVRNEEEKILLLCKGADSVMFERLGKNGREFEEETKEHVNEYADAGLRTLILAYRELEEEEYQEFDDKFTKAKSSVSADRESLIDKVTDKMERNLILLGATAVEDKLQNGVPDCIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRQDMKQIVITLETSEILALEKTGDKASITKASMQCVCDQITRGRAQLTSSSGLSEAFALIIDGKSLSYALEDSMKASFLELAICCASVICCRSSPKQKALVTRLVKFGTRKTTLAIGDGANDVGMLQEADIGVGISGAEGMQAVMSSDVAIAQFKYLERLLLVHGHWCYRRISSMICYFFYKNITFGFTIFLYEAFTSFSGQTAYNDWFLSLYNVFFSSLPVVALGVFDQDVSARFCLQFPLLYQQGAQNVLFSWLRILSWMFNGLCSAVIIFFLCTRALQHQAFNSDGKTAGRDILGATMYSCVVWVVNLQMALAVSYFTLIQHLFIWGSISIWYIFLLIYGSMTPTFSTNAYKIFIEVLAPGPSYWLVLLFVVTTTLIPYFSYSALQMRFFPMFHQMILWIRNEGQLDNQEYCDILRNYRTFRSTSVGSTARLAAKRNNSKERNKTAI 1196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3104800 3111020 - Lag0040235.1 Lac13g0439 591595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0439 1196 Pfam Cation transport ATPase (P-type) 521 624 - -
Lac13g0439 1196 FunFam Phospholipid-transporting ATPase 698 902 - -
Lac13g0439 1196 Gene3D - 699 902 IPR023214 -
Lac13g0439 1196 Coils Coil 123 143 - -
Lac13g0439 1196 ProSitePatterns E1-E2 ATPases phosphorylation site. 426 432 IPR018303 -
Lac13g0439 1196 SUPERFAMILY Calcium ATPase, transmembrane domain M 53 1140 IPR023298 -
Lac13g0439 1196 Pfam Phospholipid-translocating ATPase N-terminal 41 106 IPR032631 -
Lac13g0439 1196 FunFam Phospholipid-transporting ATPase 540 698 - -
Lac13g0439 1196 NCBIfam HAD-IC family P-type ATPase 828 945 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac13g0439 1196 Pfam Phospholipid-translocating P-type ATPase C-terminal 890 1140 IPR032630 -
Lac13g0439 1196 SUPERFAMILY HAD-like 419 917 IPR036412 -
Lac13g0439 1196 SFLD C1.7: P-type atpase like 408 913 - -
Lac13g0439 1196 Gene3D - 542 698 IPR023299 GO:0000166(InterPro)
Lac13g0439 1196 CDD P-type_ATPase_APLT_Dnf-like 57 1022 - -
Lac13g0439 1196 Gene3D - 117 286 - -
Lac13g0439 1196 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 30 1154 - GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER)
Lac13g0439 1196 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 489 665 IPR023299 GO:0000166(InterPro)
Lac13g0439 1196 FunFam Phospholipid-transporting ATPase 116 286 - -
Lac13g0439 1196 SUPERFAMILY Calcium ATPase, transduction domain A 146 283 IPR008250 -
Lac13g0439 1196 NCBIfam phospholipid-translocating P-type ATPase 55 1146 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
Lac13g0439 1196 SFLD p-type atpase 408 913 IPR044492 -
Lac13g0439 1196 PRINTS P-type cation-transporting ATPase superfamily signature 862 881 - -
Lac13g0439 1196 PRINTS P-type cation-transporting ATPase superfamily signature 424 438 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0254 Lac-Chr13:1814013 Lac13g0439 Lac-Chr13:3104800 4.50E-252 dispersed
Lac13g0439 Lac-Chr13:3104800 Lac8g2267 Lac-Chr8:40900203 2.70E-177 dispersed
Lac12g0743 Lac-Chr12:7764827 Lac13g0439 Lac-Chr13:3104800 6.50E-138 transposed
Lac1g1774 Lac-Chr1:39245090 Lac13g0439 Lac-Chr13:3104800 4.30E-189 transposed
Lac4g2994 Lac-Chr4:48177880 Lac13g0439 Lac-Chr13:3104800 0.00E+00 transposed
Lac10g0203 Lac-Chr10:1565867 Lac13g0439 Lac-Chr13:3104800 0.00E+00 wgd
Lac13g0439 Lac-Chr13:3104800 Lac8g1167 Lac-Chr8:24782303 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0439 K01530 - csv:101207148 2139.0