Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0441 ATGGCTTCCGAGTTCAGAATCGGCGAGTCAACCCACCGATTCAAAGCTGCGGCATTCAACCTGTCAATTGTTTTTTACTTCCATTGTCACAGGCGAGCTAATCTATTCAAAGTCCACACGGCCCGAGATGGTTGTTCGACTCTGAGCTTCAGTTTACGCGATCTGCGAATCTCTCGAGAGCCTTCTCTTCAGGTGAGTAAAATTCCACTCATCTCTTTCACTTTGCTGGAAAGTTTAACAAAATTATGTACAACACTTGTGCTAGCTCAACTAGTGCCTGTAGGCCCTAGCATTTTCTATGGGCCGAGGCAATCCACCCTGCTTCAATGGTCGATTTCTAGGAGGTTGATGTTGGGTGGCCGAAATCGGTTCTGTTACACACTTCCGGAATATGGGCGTGTTCTGGATTGCTATGAAGTTCCTTTTAATATTAGTGATGGCAGGACTTGTCATTGTAGTGAGGGAAAGAGATATAGAAGATGCTGCATGAATTCTGAGAGTGATTGTGAATTTGACCAATCGGATGGATTTGATGAAGAGGACATTGCTGAGGCAATGATCAGCTTGATAAGGGAGGGTATTGGTAGTCAGGGAAAAAATAGGTTATCTAAGAGAGTGGACGTGGGGAACCAAAAAAAATCCGGAGCTAAGGAGAGAAATTTAAGTTCATCGAGAAGAGTAGAACTGGAGAAAAGGGTGAGAAGAGGTGTTGAGGAGAAAAGGTTAAGTTCATTTGAAAAGATAAGAGTAGATAGAAAAAGAGAGAGTGACAGTCAGCGCGACGGAGAAGAGAGGAAAAGCAATAAGCTTGGTTCTTTAAATAGTAAACAAAACAATAAAGTTGGATCAATCGCAGTTGAGTTGAGGAAAGATGGATATAGACTGAATGGAGATCAGTTAGTTCATTCAAGAGGTGATAGTCAGAGTTTAAGAAAAGAAGGGTCAACTTGTTCATCTTATTATTCACTTTCCTCATCTGGGGATATTGAGGATGATGCTGAAGTGGAAGATAAGAATGTGCAATTCGTGGAGGAATTGTCCAGTGGGTACAGATACGACTCCGTGAATGATGTAGGAGAAAAATTAGATGGGCAGATCAAGGAAGAGTTCAAGAGACAAGGAGACAATGAGAAAAGGCGAGGAGAGGAATCAGTGCTAGGTGATACTACAATAGAGAGTCGTGCTGATTGGCGGTTGAGGAAGAGCTCAGAGAAGAAACTTAGTGAAGTATCAACAGGTGTAACATCCTCCGTAAGTGAAACATCTGAGATGAACTCAAGATTGACAAGGACCAGGGAAAGTGGTCGTGAAAGTACTTCAAGTTCCAAGAAGTTTGTTGACAAGGAAGAGGAATTGAAAATGGCTGTGACTTTGAATGAGCAATCAATACAATATGATGTATCAGGTAAGAAAGTGGGTGGCGTGTTTATAAATGAAGGGAAAAAACTTGCAGAAGTATCAGAAATAAGCCGCCATAATGCAGAAGAAATTTCTTGCTCTCAGAAAAGACTCACCATTAAGAATGAAAACCTAGAATTAGATGCAAATCTCATCAAGAAAGCAAGCAACAACAATCTTGAAACTGTTCGTCCTGTCCTTCAAGAAAAAAGTTCAAGACGAAGTTCGTCATTTCAACAGCTTTTAGGAGTTTCAGAAAATAGGAGAATTGAGAGAGAAAGGATCTCTCATCAGACAAGCCAGTCTAATGCAGTGATAAATGCAAGTGAAAGTACAGATGCCAATGTAACTTCTAATCAAGAGGTTGAAGAAAGACATCACCAAATAAGAAATCATACCATTGGAGAAATGGATTCAAGACAAAAATTTCTTCATCTTGGTGTTATATCAGTAATCAAAGAGGGTAATACTAACATCTCTGTTTCGAGTTCTGAAGTTAGAACACAAAATGAGGAACAAGATGCAGCATCAGTCAATGTATCAACTTTTGTGGCTGAAGAAAAAAAGTCTTCTACTGATCAAAAAGCTTCTCAGAGAGTCATTTCCAGAAAAGGTTCCCGAGATGCCACTGACACTTCACTGGTTCATGGTACCGATAAAATATCTGCTACATATTCTGAAAAAATATCTGAAAATAGAATCATCAAGCAAGAAACTAGTAAATCATTAGTGGAAAAAACTGTCAAGGAGACCATAATAAAAAATGGTCAAAATAATGATCGTGTGGTGCAAGGATCCATTAATTTAAGTTCTCAAAGTAGTTATCCAGGGATTGGTGTATATGAGGAAGAAAATAAAAGCTCACAGGCAGTGCTACTGCCCCCTCCATCTCAGCTTTTAGCTAGGGATCCATTGAGAATAGATTCTACTAGTGAAATGGCAAGCCAAGTAGTTTCCAGAAGAACGTCAAGAAGCAGTTCAGGTGCTTCCTACATGCAGTCAGGGGAAAGTCCAGCTTTGCACCGTAAATCCTACAGAGGAAGTGGGGCAGATGAGAGTACTGGGGAGCCCGCATGCCTTATTACTCCTGATGATACTCTAGGTTCAGCTGACCGCTTAGAGAGATCGTCTGCACAATTTGTTGGGGAGTTCATTGAGAAGTCCAGGAATGAACTCTCAATTTCTGAAATCCAGAAGGAAGAAAATATCTCTGAAGTTGATTTACTACATGGAGAGAAGCCTGAACAAAAGAGTTCTGTAGATTATCAAATAAAGGACCATGAATCAAGGCTCTCGTCACGGAGTTCTGGTTCCAAGGGTCCTTCTGATGAAATGTGGCATGTAATAGACTCAACTACTGAGGAACCTCCCAATCCTGAGATTAGTGCAAACAGTGAGAATGCAATTGTCAAGAGAAGTGGCAGATCTTTGTGGAATGTCATTTCAGACATAGTTCGTCTCCGTTGGAATTCACATGCTGGAACCTCTGATTCGGCTTTAAGATCAGGTGGAAGAAATTCACCAAACGAGTCTGTTAGTAATGAGACGTGGTTTTCTGGCCGTGAACATGAGGAGACAGATAATACAAAAATGGGAAGAACCACAGTTTCTGAAGTCACTTCTTCTGATCGGTTGGAAGAACCAAATCCTTCTGCCCAAGGCCAAGATTTATCTGATGATAAGAAAGCAAAGAGTATATATTATGAAGTAGGTACCCCATCTTCTCCAAATATAATGGAGACCATGCCATCATCAGGTGGGGCTTTGTTAGTTTCTGGAGAAGCGATCTTAAAAGATGGTAGGAAGGTTGACATTATTTCTTCTGGTTCCGATATAGAACAGTCTTCATTACCACTGTCTCCCCAAGGCATAAGAGGATCTCTGGTTATTGAAGAAATTTCTCCCTTTGCAAGCAGCTCAGCAGAGCAGTTGGGGCATTCTTCTGATGCAACATTACCAGAGATGTCAACAACTGGAACCAAGCATGGCGAAGTGAAACAAAGGAAGCTTCAAAGAAACAAGCAAGTTCTAAAAGATCGATTTGATGAATGGGAAGAAGCATACATACTTGAAACTGAGCAGCGAAAAATGGATGAAATGTTTATGAGGGAAGCACTTGCTGAAGCCAAGAAGGCGGCTGATACTTGGGAGGTGCCTGTTGGAGCAGTATTGGTGAAACATGGAAAAATTATTGCTCGTGGCTGCAACCTGGTCGAAGAGTTGCGAGATTCCACAGCCCATGCAGAAATGATTTGTATTCGGGAGGCTTCAAAGCAGTTAAAGACATGGAGGCTTGCTGAGACAACTCTCTATGTGACACTTGAACCGTGCCCTATGTGCGCTGGAGCGATACTACAAGCACGAATCGAGAATCTTGTGTGGGGAGCACCAAATAAGCTTCTTGGGGCTGATGGCAGCTGGATTAGACTTTTTCCTGATGGTGGGGAGGGAAATGCCCCGGAACAGTCTGAGAAGCCTGCTGCACCTGTCCATCCATTCCACCCAAAAATGACGATACGGCGAGGTGTTTTGGCATCAGAATGTGCAGATGTAATGCAACATTTCTTTCAGCTAAGGAGAAGGAAGAAGCAAAAGAAAGAAAACAAACCACCTCTAAAGATTGTTCATCATCCATCAAAATTTATGACTAAGATGCACAATATTTTCCACATATTGTTCTGTTTGTAA 4086 41.51 MASEFRIGESTHRFKAAAFNLSIVFYFHCHRRANLFKVHTARDGCSTLSFSLRDLRISREPSLQVSKIPLISFTLLESLTKLCTTLVLAQLVPVGPSIFYGPRQSTLLQWSISRRLMLGGRNRFCYTLPEYGRVLDCYEVPFNISDGRTCHCSEGKRYRRCCMNSESDCEFDQSDGFDEEDIAEAMISLIREGIGSQGKNRLSKRVDVGNQKKSGAKERNLSSSRRVELEKRVRRGVEEKRLSSFEKIRVDRKRESDSQRDGEERKSNKLGSLNSKQNNKVGSIAVELRKDGYRLNGDQLVHSRGDSQSLRKEGSTCSSYYSLSSSGDIEDDAEVEDKNVQFVEELSSGYRYDSVNDVGEKLDGQIKEEFKRQGDNEKRRGEESVLGDTTIESRADWRLRKSSEKKLSEVSTGVTSSVSETSEMNSRLTRTRESGRESTSSSKKFVDKEEELKMAVTLNEQSIQYDVSGKKVGGVFINEGKKLAEVSEISRHNAEEISCSQKRLTIKNENLELDANLIKKASNNNLETVRPVLQEKSSRRSSSFQQLLGVSENRRIERERISHQTSQSNAVINASESTDANVTSNQEVEERHHQIRNHTIGEMDSRQKFLHLGVISVIKEGNTNISVSSSEVRTQNEEQDAASVNVSTFVAEEKKSSTDQKASQRVISRKGSRDATDTSLVHGTDKISATYSEKISENRIIKQETSKSLVEKTVKETIIKNGQNNDRVVQGSINLSSQSSYPGIGVYEEENKSSQAVLLPPPSQLLARDPLRIDSTSEMASQVVSRRTSRSSSGASYMQSGESPALHRKSYRGSGADESTGEPACLITPDDTLGSADRLERSSAQFVGEFIEKSRNELSISEIQKEENISEVDLLHGEKPEQKSSVDYQIKDHESRLSSRSSGSKGPSDEMWHVIDSTTEEPPNPEISANSENAIVKRSGRSLWNVISDIVRLRWNSHAGTSDSALRSGGRNSPNESVSNETWFSGREHEETDNTKMGRTTVSEVTSSDRLEEPNPSAQGQDLSDDKKAKSIYYEVGTPSSPNIMETMPSSGGALLVSGEAILKDGRKVDIISSGSDIEQSSLPLSPQGIRGSLVIEEISPFASSSAEQLGHSSDATLPEMSTTGTKHGEVKQRKLQRNKQVLKDRFDEWEEAYILETEQRKMDEMFMREALAEAKKAADTWEVPVGAVLVKHGKIIARGCNLVEELRDSTAHAEMICIREASKQLKTWRLAETTLYVTLEPCPMCAGAILQARIENLVWGAPNKLLGADGSWIRLFPDGGEGNAPEQSEKPAAPVHPFHPKMTIRRGVLASECADVMQHFFQLRRRKKQKKENKPPLKIVHHPSKFMTKMHNIFHILFCL 1361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3126914 3131798 + Lag0040237.1 Lac13g0441 591597

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0441 1361 MobiDBLite consensus disorder prediction 871 899 - -
Lac13g0441 1361 Pfam MafB19-like deaminase 1165 1274 IPR028883 GO:0002100(InterPro)|GO:0008251(InterPro)
Lac13g0441 1361 MobiDBLite consensus disorder prediction 249 270 - -
Lac13g0441 1361 MobiDBLite consensus disorder prediction 998 1022 - -
Lac13g0441 1361 Coils Coil 1133 1153 - -
Lac13g0441 1361 MobiDBLite consensus disorder prediction 408 425 - -
Lac13g0441 1361 MobiDBLite consensus disorder prediction 777 833 - -
Lac13g0441 1361 MobiDBLite consensus disorder prediction 408 445 - -
Lac13g0441 1361 MobiDBLite consensus disorder prediction 200 227 - -
Lac13g0441 1361 MobiDBLite consensus disorder prediction 366 387 - -
Lac13g0441 1361 MobiDBLite consensus disorder prediction 426 445 - -
Lac13g0441 1361 SUPERFAMILY Cytidine deaminase-like 1146 1328 IPR016193 GO:0003824(InterPro)
Lac13g0441 1361 Hamap tRNA-specific adenosine deaminase [tadA]. 1168 1326 IPR028883 GO:0002100(InterPro)|GO:0008251(InterPro)
Lac13g0441 1361 MobiDBLite consensus disorder prediction 249 278 - -
Lac13g0441 1361 MobiDBLite consensus disorder prediction 1105 1126 - -
Lac13g0441 1361 MobiDBLite consensus disorder prediction 205 227 - -
Lac13g0441 1361 MobiDBLite consensus disorder prediction 960 1028 - -
Lac13g0441 1361 MobiDBLite consensus disorder prediction 871 911 - -
Lac13g0441 1361 MobiDBLite consensus disorder prediction 777 800 - -
Lac13g0441 1361 Gene3D Cytidine Deaminase, domain 2 1151 1339 - -
Lac13g0441 1361 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 1162 1284 IPR002125 -
Lac13g0441 1361 MobiDBLite consensus disorder prediction 1105 1135 - -
Lac13g0441 1361 CDD nucleoside_deaminase 1180 1275 - -
Lac13g0441 1361 PANTHER CYTOSINE DEAMINASE FAMILY MEMBER 1142 1331 - GO:0009507(PANTHER)
Lac13g0441 1361 FunFam tRNA-specific adenosine deaminase 1157 1337 - -
Lac13g0441 1361 MobiDBLite consensus disorder prediction 654 678 - -
Lac13g0441 1361 MobiDBLite consensus disorder prediction 960 982 - -
Lac13g0441 1361 MobiDBLite consensus disorder prediction 983 997 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0441 K11991 - - csv:101215576 1897.48
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g220 . . . . . . Bma14g01686 . . Cmo18g01080 . Cma18g01058 . Car18g00983 Sed08g1290 Cpe09g00259 . Bhi07g01388 Tan04g0923 Cmetu02g0302 Lac13g0441 Hepe10g1853 . . Cla05g02348 Cam05g2519 Cec05g2546 Cco05g2588 Clacu05g2514 Cmu05g2376 Cre05g2492 Cone13ag0870 Cone19ag0871 . . Lsi04g00307 Csa05g02561 Chy10g01101 Cme10g00309 . Blo11g00821 Bda07g01517 . Bpe11g01679 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010359 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32