Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac13g0455 | ATGCGTGGGGAGGATCAAGAAGAGGAACATCATCATCATCTTCAAGGGGAGTGTTCACAAACTATTGAGAATATGTTTCAAGAACAGCTTCTTCTTCACCAACAGCTACAAAACAACAACAACAACACTGATCATATCATGTATGGAGATCATCATCATGGGACTGGAAGAGGGTTGATTTTCCCCGCCGAAGTCGTGTCGCCGGTTCTGCAGCCGTGGCCACCGCTCAACCCATTTCTGATCCCTCCTCCACCTCCGCCGCCACCGACATCGTTATGCTCGTCGTCATCATATGGTAGTTTGTTTAACCGGAGACCTCCTAATTGTCTTCAGTTTGCTTATGATGGTCCATCTTCGGCGGACCACCTCGGCCGGATCATATCGACCACGCTTGGACCGGTGGTTCATCCAGGTTCCACGGCTCCCTTTGGACTACAAGCCGAGCTCGGCAAAATGAGTGCTCAAGAAATAATGGATGCCAAAGCTCTTGCAGCTTCTAAAAGCCACAGCGAAGCTGAGAGGAGAAGAAGAGAAAGAATCAACAATCATCTCGCTAAGCTCCGGAGCCTACTTCCTAGTACCACTAAAACAGACAAAGCTTCACTGCTAGCAGAAGTAATACAACACGTGAAAGAGCTAAAACGGCAAACTTCATTGATAGCAGAAACAAGTCCAATCCCAACAGAAGTTGACGAGCTAACTGTGGACGACGCCTCCGACGAGATGACGACGATCAACGGCGCCAAATTTGTCATAAAGGCTTCTCTTTGCTGTGAGGACCGTTCAGATCTCCTCCCTGACCTCATCAAAACGCTCAAATCCTTGCGTTTAAGAACCCTCAAAGCAGAAATCACAACCCTTGGTGGCCGTGTAAGAAATGTCTTGTTTGTCACCGGAGAAGACGATTCGACAACAACCGATAACAATCCGAACTCGGACGACCAAGAACAACAACAACAACAACACAATATCAGCTCAATCCAAGAAGCACTGAAGGCTGTCATGGAAAAAACAGGAGGGGATGATTCTTCTTCAGCAAACATTAAAAGACAAAGGACAAATAACATCAATATCCTTTAA | 1080 | 46.76 | MRGEDQEEEHHHHLQGECSQTIENMFQEQLLLHQQLQNNNNNTDHIMYGDHHHGTGRGLIFPAEVVSPVLQPWPPLNPFLIPPPPPPPPTSLCSSSSYGSLFNRRPPNCLQFAYDGPSSADHLGRIISTTLGPVVHPGSTAPFGLQAELGKMSAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTSLIAETSPIPTEVDELTVDDASDEMTTINGAKFVIKASLCCEDRSDLLPDLIKTLKSLRLRTLKAEITTLGGRVRNVLFVTGEDDSTTTDNNPNSDDQEQQQQQHNISSIQEALKAVMEKTGGDDSSSANIKRQRTNNINIL | 359 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 3277213 | 3279537 | + | Lag0040251.1 | Lac13g0455 | 591611 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac13g0455 | 359 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 164 | 213 | IPR011598 | GO:0046983(InterPro) | |
| Lac13g0455 | 359 | CDD | bHLH_AtAIG1_like | 159 | 236 | - | - | |
| Lac13g0455 | 359 | MobiDBLite | consensus disorder prediction | 299 | 324 | - | - | |
| Lac13g0455 | 359 | FunFam | transcription factor bHLH30 | 159 | 222 | - | - | |
| Lac13g0455 | 359 | SMART | finulus | 170 | 219 | IPR011598 | GO:0046983(InterPro) | |
| Lac13g0455 | 359 | Gene3D | - | 159 | 220 | IPR036638 | GO:0046983(InterPro) | |
| Lac13g0455 | 359 | Pfam | Helix-loop-helix DNA-binding domain | 167 | 214 | IPR011598 | GO:0046983(InterPro) | |
| Lac13g0455 | 359 | PANTHER | TRANSCRIPTION FACTOR BHLH30 | 139 | 353 | IPR045847 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Lac13g0455 | 359 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 168 | 220 | IPR036638 | GO:0046983(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac13g0455 | Lac-Chr13:3277213 | Lac7g1874 | Lac-Chr7:26802790 | 3.30E-38 | dispersed | |
| Lac13g0455 | Lac-Chr13:3277213 | Lac10g0940 | Lac-Chr10:7480773 | 1.80E-28 | transposed | |
| Lac13g0455 | Lac-Chr13:3277213 | Lac9g2200 | Lac-Chr9:41455629 | 1.80E-28 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 23152 | PF00010 | HLH | 1.80E-12 | No_clan | Lac | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac13g0455 | - | - | - | 0.0 |