Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0455 ATGCGTGGGGAGGATCAAGAAGAGGAACATCATCATCATCTTCAAGGGGAGTGTTCACAAACTATTGAGAATATGTTTCAAGAACAGCTTCTTCTTCACCAACAGCTACAAAACAACAACAACAACACTGATCATATCATGTATGGAGATCATCATCATGGGACTGGAAGAGGGTTGATTTTCCCCGCCGAAGTCGTGTCGCCGGTTCTGCAGCCGTGGCCACCGCTCAACCCATTTCTGATCCCTCCTCCACCTCCGCCGCCACCGACATCGTTATGCTCGTCGTCATCATATGGTAGTTTGTTTAACCGGAGACCTCCTAATTGTCTTCAGTTTGCTTATGATGGTCCATCTTCGGCGGACCACCTCGGCCGGATCATATCGACCACGCTTGGACCGGTGGTTCATCCAGGTTCCACGGCTCCCTTTGGACTACAAGCCGAGCTCGGCAAAATGAGTGCTCAAGAAATAATGGATGCCAAAGCTCTTGCAGCTTCTAAAAGCCACAGCGAAGCTGAGAGGAGAAGAAGAGAAAGAATCAACAATCATCTCGCTAAGCTCCGGAGCCTACTTCCTAGTACCACTAAAACAGACAAAGCTTCACTGCTAGCAGAAGTAATACAACACGTGAAAGAGCTAAAACGGCAAACTTCATTGATAGCAGAAACAAGTCCAATCCCAACAGAAGTTGACGAGCTAACTGTGGACGACGCCTCCGACGAGATGACGACGATCAACGGCGCCAAATTTGTCATAAAGGCTTCTCTTTGCTGTGAGGACCGTTCAGATCTCCTCCCTGACCTCATCAAAACGCTCAAATCCTTGCGTTTAAGAACCCTCAAAGCAGAAATCACAACCCTTGGTGGCCGTGTAAGAAATGTCTTGTTTGTCACCGGAGAAGACGATTCGACAACAACCGATAACAATCCGAACTCGGACGACCAAGAACAACAACAACAACAACACAATATCAGCTCAATCCAAGAAGCACTGAAGGCTGTCATGGAAAAAACAGGAGGGGATGATTCTTCTTCAGCAAACATTAAAAGACAAAGGACAAATAACATCAATATCCTTTAA 1080 46.76 MRGEDQEEEHHHHLQGECSQTIENMFQEQLLLHQQLQNNNNNTDHIMYGDHHHGTGRGLIFPAEVVSPVLQPWPPLNPFLIPPPPPPPPTSLCSSSSYGSLFNRRPPNCLQFAYDGPSSADHLGRIISTTLGPVVHPGSTAPFGLQAELGKMSAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTSLIAETSPIPTEVDELTVDDASDEMTTINGAKFVIKASLCCEDRSDLLPDLIKTLKSLRLRTLKAEITTLGGRVRNVLFVTGEDDSTTTDNNPNSDDQEQQQQQHNISSIQEALKAVMEKTGGDDSSSANIKRQRTNNINIL 359
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
13 3277213 3279537 + Lag0040251.1 Lac13g0455 591611
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0455 359 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 164 213 IPR011598 GO:0046983(InterPro)
Lac13g0455 359 CDD bHLH_AtAIG1_like 159 236 - -
Lac13g0455 359 MobiDBLite consensus disorder prediction 299 324 - -
Lac13g0455 359 FunFam transcription factor bHLH30 159 222 - -
Lac13g0455 359 SMART finulus 170 219 IPR011598 GO:0046983(InterPro)
Lac13g0455 359 Gene3D - 159 220 IPR036638 GO:0046983(InterPro)
Lac13g0455 359 Pfam Helix-loop-helix DNA-binding domain 167 214 IPR011598 GO:0046983(InterPro)
Lac13g0455 359 PANTHER TRANSCRIPTION FACTOR BHLH30 139 353 IPR045847 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac13g0455 359 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 168 220 IPR036638 GO:0046983(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0455 Lac-Chr13:3277213 Lac7g1874 Lac-Chr7:26802790 3.30E-38 dispersed
Lac13g0455 Lac-Chr13:3277213 Lac10g0940 Lac-Chr10:7480773 1.80E-28 transposed
Lac13g0455 Lac-Chr13:3277213 Lac9g2200 Lac-Chr9:41455629 1.80E-28 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23152 PF00010 HLH 1.80E-12 No_clan Lac TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0455 - - - 0.0