Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac13g0460 | ATGGACGGAATTTGCATTGACGAAACCACTTCCACTGAATCTCAATCCCAATCCACGAATTTCCCGGTGCTCGTCAAATCTCCGCCGCCGGAGACCAGCCTCTGCCGCGTCGGCAGCGGCGCCACCAGTGTGGTTCTCGACTCCGACTCTTCCAGCGGCTGCGGCGTCGAGGCCGAGTCCCGGAAACTTCCCTCCTCCCGTTACAAAGGAGTGGTCCCACAGCCCAACTGCCGCTGGGGGGCGCAGATTTACGAGAAGCACCAAAGGGTATGGCTGGGGACCTTCAACGAAGAGGACGAAGCCGCACGTGCCTACGACGTGGCCGCCCAACGCTTCCGTGGCCGTGACGCCGTCACCAATTTCAAACCGTTATCTCACGGCGAGGAGGACGACGTCGTATCCGCCTTCCTCAACTCCCATTCCAAGGCCGAGATCGTCGACATGCTACGTAAGCACACCTACCTCGACGAGCTCCAGCAAAGCAAACGAAACGCCGGCTTATTCGGTTCGGATCGGAAAAGAAACCGCTTCCTATCCGGTTCGGACAACGACCCGGAAACCTCCCGCGAACTTCTATTCGAAAAAGCCGTTACTCCAAGCGATGTGGGAAAATTGAACCGTCTAGTCATCCCAAAGCAACACGCGGAAAAGAACTTCCCTCTCCAAACCGGCTCGACCGCTTCCTCCAAAGGTCTCCTCTTGAACTTCGAAGACGGAGGCGGCAAAGTCTGGCGGTTCAGGTACTCGTATTGGAACAGTAGCCAAAGCTACGTGCTGACCAAAGGGTGGAGCCGGTTCGTGAAAGAAAAGAATCTGAAAGCCGGTGACATTGTGAGCTTCTTGAAATCGACCGGCCAAGACAAACAGCTTTACATCGAATGGAAGGCCAGAAAGGCTCCGGCCACAACCGGGTCCAACATGAACCCGGTTCAGACCGTGAGATTATTCGGAGTCGACATTATCAAAGTATCGCCAAATAGTGGGTGCAGTGAGAAGAGGAGAAGAGAAATGGAGTTTCTCTCTTTAGAATGTGCCAAAAAACAAAGGATAGTCGGAGCATTGTAA | 1065 | 54.46 | MDGICIDETTSTESQSQSTNFPVLVKSPPPETSLCRVGSGATSVVLDSDSSSGCGVEAESRKLPSSRYKGVVPQPNCRWGAQIYEKHQRVWLGTFNEEDEAARAYDVAAQRFRGRDAVTNFKPLSHGEEDDVVSAFLNSHSKAEIVDMLRKHTYLDELQQSKRNAGLFGSDRKRNRFLSGSDNDPETSRELLFEKAVTPSDVGKLNRLVIPKQHAEKNFPLQTGSTASSKGLLLNFEDGGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFLKSTGQDKQLYIEWKARKAPATTGSNMNPVQTVRLFGVDIIKVSPNSGCSEKRRREMEFLSLECAKKQRIVGAL | 354 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 3330246 | 3331310 | + | Lag0040256.1 | Lac13g0460 | 591616 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac13g0460 | 354 | SUPERFAMILY | DNA-binding domain | 66 | 122 | IPR016177 | GO:0003677(InterPro) | |
Lac13g0460 | 354 | SMART | rav1_2 | 67 | 128 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac13g0460 | 354 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 66 | 320 | IPR044800 | GO:0003700(InterPro) | |
Lac13g0460 | 354 | ProSiteProfiles | B3 DNA-binding domain profile. | 193 | 298 | IPR003340 | GO:0003677(InterPro) | |
Lac13g0460 | 354 | Gene3D | AP2/ERF domain | 66 | 123 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac13g0460 | 354 | Pfam | B3 DNA binding domain | 193 | 294 | IPR003340 | GO:0003677(InterPro) | |
Lac13g0460 | 354 | CDD | B3_DNA | 192 | 280 | IPR003340 | GO:0003677(InterPro) | |
Lac13g0460 | 354 | CDD | AP2 | 66 | 121 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac13g0460 | 354 | SMART | B3_2 | 193 | 298 | IPR003340 | GO:0003677(InterPro) | |
Lac13g0460 | 354 | SUPERFAMILY | DNA-binding pseudobarrel domain | 189 | 285 | IPR015300 | - | |
Lac13g0460 | 354 | FunFam | AP2 domain-containing protein RAP2.8 | 66 | 123 | - | - | |
Lac13g0460 | 354 | ProSiteProfiles | AP2/ERF domain profile. | 67 | 122 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac13g0460 | 354 | Gene3D | - | 180 | 306 | IPR015300 | - | |
Lac13g0460 | 354 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Lac13g0460 | 354 | MobiDBLite | consensus disorder prediction | 7 | 25 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac12g1184 | Lac-Chr12:16011459 | Lac13g0460 | Lac-Chr13:3330246 | 7.50E-40 | dispersed | |
Lac13g0460 | Lac-Chr13:3330246 | Lac3g1291 | Lac-Chr3:11145011 | 7.20E-46 | dispersed | |
Lac13g0460 | Lac-Chr13:3330246 | Lac8g1280 | Lac-Chr8:27917084 | 8.60E-108 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23154 | PF02362 | B3 | 1.20E-27 | CL0405 | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac13g0460 | K09287 | - | csv:101203784 | 629.402 |