Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0460 ATGGACGGAATTTGCATTGACGAAACCACTTCCACTGAATCTCAATCCCAATCCACGAATTTCCCGGTGCTCGTCAAATCTCCGCCGCCGGAGACCAGCCTCTGCCGCGTCGGCAGCGGCGCCACCAGTGTGGTTCTCGACTCCGACTCTTCCAGCGGCTGCGGCGTCGAGGCCGAGTCCCGGAAACTTCCCTCCTCCCGTTACAAAGGAGTGGTCCCACAGCCCAACTGCCGCTGGGGGGCGCAGATTTACGAGAAGCACCAAAGGGTATGGCTGGGGACCTTCAACGAAGAGGACGAAGCCGCACGTGCCTACGACGTGGCCGCCCAACGCTTCCGTGGCCGTGACGCCGTCACCAATTTCAAACCGTTATCTCACGGCGAGGAGGACGACGTCGTATCCGCCTTCCTCAACTCCCATTCCAAGGCCGAGATCGTCGACATGCTACGTAAGCACACCTACCTCGACGAGCTCCAGCAAAGCAAACGAAACGCCGGCTTATTCGGTTCGGATCGGAAAAGAAACCGCTTCCTATCCGGTTCGGACAACGACCCGGAAACCTCCCGCGAACTTCTATTCGAAAAAGCCGTTACTCCAAGCGATGTGGGAAAATTGAACCGTCTAGTCATCCCAAAGCAACACGCGGAAAAGAACTTCCCTCTCCAAACCGGCTCGACCGCTTCCTCCAAAGGTCTCCTCTTGAACTTCGAAGACGGAGGCGGCAAAGTCTGGCGGTTCAGGTACTCGTATTGGAACAGTAGCCAAAGCTACGTGCTGACCAAAGGGTGGAGCCGGTTCGTGAAAGAAAAGAATCTGAAAGCCGGTGACATTGTGAGCTTCTTGAAATCGACCGGCCAAGACAAACAGCTTTACATCGAATGGAAGGCCAGAAAGGCTCCGGCCACAACCGGGTCCAACATGAACCCGGTTCAGACCGTGAGATTATTCGGAGTCGACATTATCAAAGTATCGCCAAATAGTGGGTGCAGTGAGAAGAGGAGAAGAGAAATGGAGTTTCTCTCTTTAGAATGTGCCAAAAAACAAAGGATAGTCGGAGCATTGTAA 1065 54.46 MDGICIDETTSTESQSQSTNFPVLVKSPPPETSLCRVGSGATSVVLDSDSSSGCGVEAESRKLPSSRYKGVVPQPNCRWGAQIYEKHQRVWLGTFNEEDEAARAYDVAAQRFRGRDAVTNFKPLSHGEEDDVVSAFLNSHSKAEIVDMLRKHTYLDELQQSKRNAGLFGSDRKRNRFLSGSDNDPETSRELLFEKAVTPSDVGKLNRLVIPKQHAEKNFPLQTGSTASSKGLLLNFEDGGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFLKSTGQDKQLYIEWKARKAPATTGSNMNPVQTVRLFGVDIIKVSPNSGCSEKRRREMEFLSLECAKKQRIVGAL 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3330246 3331310 + Lag0040256.1 Lac13g0460 591616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0460 354 SUPERFAMILY DNA-binding domain 66 122 IPR016177 GO:0003677(InterPro)
Lac13g0460 354 SMART rav1_2 67 128 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac13g0460 354 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 66 320 IPR044800 GO:0003700(InterPro)
Lac13g0460 354 ProSiteProfiles B3 DNA-binding domain profile. 193 298 IPR003340 GO:0003677(InterPro)
Lac13g0460 354 Gene3D AP2/ERF domain 66 123 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac13g0460 354 Pfam B3 DNA binding domain 193 294 IPR003340 GO:0003677(InterPro)
Lac13g0460 354 CDD B3_DNA 192 280 IPR003340 GO:0003677(InterPro)
Lac13g0460 354 CDD AP2 66 121 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac13g0460 354 SMART B3_2 193 298 IPR003340 GO:0003677(InterPro)
Lac13g0460 354 SUPERFAMILY DNA-binding pseudobarrel domain 189 285 IPR015300 -
Lac13g0460 354 FunFam AP2 domain-containing protein RAP2.8 66 123 - -
Lac13g0460 354 ProSiteProfiles AP2/ERF domain profile. 67 122 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac13g0460 354 Gene3D - 180 306 IPR015300 -
Lac13g0460 354 MobiDBLite consensus disorder prediction 1 25 - -
Lac13g0460 354 MobiDBLite consensus disorder prediction 7 25 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g1184 Lac-Chr12:16011459 Lac13g0460 Lac-Chr13:3330246 7.50E-40 dispersed
Lac13g0460 Lac-Chr13:3330246 Lac3g1291 Lac-Chr3:11145011 7.20E-46 dispersed
Lac13g0460 Lac-Chr13:3330246 Lac8g1280 Lac-Chr8:27917084 8.60E-108 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23154 PF02362 B3 1.20E-27 CL0405 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0460 K09287 - csv:101203784 629.402