Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0461 ATGGATTTCGTCGATAATGTTCTCGATATTCGAGTGGGAATGGATTTGAGGCACTACGCCGATGCTTTGGATCAAGAACGCAACAAAATTCAGGTCTTTCAGCGGGAACTTCCTCTCTGTTTGGAGCTTGTTACCAGAGCTATTGATTCTTGCCGGCAGCAGTTATCTGGGTTGTCGACGGCGAGTTCAGAGCATACTTCCAGTGATGGCCCTGTTTTGGAGGAGTTTATTCCGATTAAGAAAGTTTCAGCCAATTCCCATTTTGAAAATGAAGGAGAGGAACAATCTAAACCAGAGAAAATTGAAGTGGGTCAATTGGATTGGCTTAAATCCGCTCAGCTTTGGAATCAATCGCCGGATCCTCCCGTAACAGAGGATGTCGCTAAGAAAACGACGTCGTCGGTTGTTGAGGTCCAAAAGAATGGCGGTGGCTGTGGCGGTGTCGGTGCTTTTCAGCCATTTCAGAAGGAGAAAACTCCAATGAAAACAGAGGCGGCGGCGATCGTCTGTAAAAAGGTCGGTTCTTCTCCGGTGCCGGAGGCGACGACGAGTTCGACAGCGGAAACCGCCTCCAAAGGGAGCGGCGGAACTAGTAAACGAGAAGATAAGGAATCTCAGACTCATAGAAAACAGAGGCGATGCTGGTCGTCGGAGTTACACCGGCGATTCGTTCATGCCCTTCAACAACTCGGCGGCCCTCACGTTGCTACACCGAAACAAATCAGAGAGTTAATGAAGGTCGATGGGCTCACTAACGATGAAGTCAAAAGCCATTTACAGAAATACCGATTGCACGCAAGAAGGCCAACAAATTCTGCATTAATGCAAGACAGCGGCAGCTCATCGCCGCCGCAGCAATTCGTGGTGGTTGGAAGCATATGGGTACCGCCGCCGCCGACGCCGCCGAAGTACGCGGCGACGACGACAACGGAAGGAAGAAATGGGATTTATGCTCCGGTGGCGACGGCGTTGCGACGGCCGAAGACGGCGGAGGAAGGGAAGGGGAGCCACAGCGGCGGAATGGTTCGTTCGAATTCGCCGGCGACGTCTTCCTCCACTCACACCACCACAACCTCGCCGGCGGCGGCGTAG 1092 52.38 MDFVDNVLDIRVGMDLRHYADALDQERNKIQVFQRELPLCLELVTRAIDSCRQQLSGLSTASSEHTSSDGPVLEEFIPIKKVSANSHFENEGEEQSKPEKIEVGQLDWLKSAQLWNQSPDPPVTEDVAKKTTSSVVEVQKNGGGCGGVGAFQPFQKEKTPMKTEAAAIVCKKVGSSPVPEATTSSTAETASKGSGGTSKREDKESQTHRKQRRCWSSELHRRFVHALQQLGGPHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHARRPTNSALMQDSGSSSPPQQFVVVGSIWVPPPPTPPKYAATTTTEGRNGIYAPVATALRRPKTAEEGKGSHSGGMVRSNSPATSSSTHTTTTSPAAA 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3340474 3341945 + Lag0040257.1 Lac13g0461 591617

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0461 363 SUPERFAMILY Homeodomain-like 207 267 IPR009057 -
Lac13g0461 363 MobiDBLite consensus disorder prediction 177 194 - -
Lac13g0461 363 Pfam Myb-like DNA-binding domain 212 263 IPR001005 -
Lac13g0461 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 207 267 IPR017930 -
Lac13g0461 363 MobiDBLite consensus disorder prediction 305 363 - -
Lac13g0461 363 NCBIfam myb-like DNA-binding domain, SHAQKYF class 210 265 IPR006447 GO:0003677(InterPro)
Lac13g0461 363 FunFam Myb family transcription factor 209 267 - -
Lac13g0461 363 Coils Coil 16 36 - -
Lac13g0461 363 Gene3D - 209 266 - -
Lac13g0461 363 MobiDBLite consensus disorder prediction 175 214 - -
Lac13g0461 363 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 15 332 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac13g0461 363 MobiDBLite consensus disorder prediction 195 214 - -
Lac13g0461 363 MobiDBLite consensus disorder prediction 339 363 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0461 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0461 Lac-Chr13:3340474 Lac3g0859 Lac-Chr3:6887729 5.00E-42 dispersed
Lac13g0461 Lac-Chr13:3340474 Lac8g1421 Lac-Chr8:31047508 7.40E-62 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g270 Blo01g00489 Blo16g01054 Bda01g02090 . Bpe13g01332 . Bma14g01699 . . Cmo18g01059 . Cma18g01041 . Car18g00967 Sed06g1866 Cpe09g00276 . Bhi07g01367 Tan04g0896 Cmetu10g0277 Lac13g0461 Hepe01g1219 . . Cla05g02327 Cam05g2500 Cec05g2524 Cco05g2566 Clacu05g2494 Cmu05g2357 Cre05g2473 Cone13ag0852 Cone19ag0853 Cone6ag0464 Cone9ag0476 Lsi04g00286 Csa05g02583 Chy10g01118 Cme10g00288 . Blo11g00832 Bda07g01528 . . Bpe02g02281 . Bma06g00768 . . . . . . Car15g00854 Cpe13g00409 . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac7g0460 . 12 319 G2-like Transcription Factor Family AT3G24120 56.6 3.9e-77 285.8
Lac1g3111 . 31 195 G2-like Transcription Factor Family AT3G24120 58.0 3.7e-43 172.9
Lac12g0030 . 18 194 G2-like Transcription Factor Family AT3G24120 57.2 4.1e-42 169.5
Lac9g2297 . 22 167 G2-like Transcription Factor Family AT3G24120 61.7 8.5e-40 161.8
Lac11g2446 . 190 391 G2-like Transcription Factor Family AT5G16560 50.7 4.7e-41 166.4
Lac11g2446 . 198 391 G2-like Transcription Factor Family AT4G17695 50.3 1.6e-36 151.0
Lac2g0265 . 10 183 G2-like Transcription Factor Family AT5G42630 58.2 2.6e-41 166.4
Lac6g0365 . 16 162 G2-like Transcription Factor Family AT5G42630 60.6 2.4e-39 159.8
Lac7g2753 . 1 322 G2-like Transcription Factor Family AT5G59570 50.7 1.9e-63 240.4
Lac9g2452 . 19 216 G2-like Transcription Factor Family AT5G59570 50.2 5.5e-39 159.1
Lac13g0461 . 19 260 G2-like Transcription Factor Family AT1G25550 50.6 4.0e-52 202.6
Lac8g1421 . 20 266 G2-like Transcription Factor Family AT1G25550 54.2 4.5e-51 199.1
Lac7g2753 . 1 295 G2-like Transcription Factor Family AT3G46640 50.7 6.0e-63 238.8
Lac1g1554 . 1 302 G2-like Transcription Factor Family AT5G05090 56.9 2.8e-74 276.2
Lac10g2310 . 1 286 G2-like Transcription Factor Family AT5G05090 57.4 1.5e-72 270.4
Lac7g0460 . 12 319 G2-like Transcription Factor Family AT4G13640 56.7 1.2e-62 237.7
Lac7g0460 . 12 319 G2-like Transcription Factor Family AT3G24120 56.6 3.9e-77 285.8
Lac1g3111 . 31 195 G2-like Transcription Factor Family AT3G24120 58.0 3.7e-43 172.9
Lac12g0030 . 18 194 G2-like Transcription Factor Family AT3G24120 57.2 4.1e-42 169.5
Lac9g2297 . 22 167 G2-like Transcription Factor Family AT3G24120 61.7 8.5e-40 161.8
Lac9g2297 . 1 364 G2-like Transcription Factor Family AT1G79430 53.5 9.1e-81 298.1
Lac12g0030 . 3 356 G2-like Transcription Factor Family AT1G79430 52.8 1.2e-80 297.7
Lac7g0460 . 44 208 G2-like Transcription Factor Family AT1G79430 61.2 1.7e-39 161.0
Lac1g3110 . 85 330 G2-like Transcription Factor Family AT2G01060 62.8 4.2e-58 222.2
Lac1g1554 . 1 302 G2-like Transcription Factor Family AT3G10760 62.5 2.4e-91 333.2
Lac10g2310 . 1 286 G2-like Transcription Factor Family AT3G10760 57.5 4.2e-88 322.4
Lac1g1554 . 1 204 G2-like Transcription Factor Family AT2G40970 60.8 1.6e-60 230.3
Lac3g1914 . 485 626 G2-like Transcription Factor Family AT4G28610 71.3 3.5e-44 176.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013799 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 0 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23155 None None None None Lac TF