Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0461 ATGGATTTCGTCGATAATGTTCTCGATATTCGAGTGGGAATGGATTTGAGGCACTACGCCGATGCTTTGGATCAAGAACGCAACAAAATTCAGGTCTTTCAGCGGGAACTTCCTCTCTGTTTGGAGCTTGTTACCAGAGCTATTGATTCTTGCCGGCAGCAGTTATCTGGGTTGTCGACGGCGAGTTCAGAGCATACTTCCAGTGATGGCCCTGTTTTGGAGGAGTTTATTCCGATTAAGAAAGTTTCAGCCAATTCCCATTTTGAAAATGAAGGAGAGGAACAATCTAAACCAGAGAAAATTGAAGTGGGTCAATTGGATTGGCTTAAATCCGCTCAGCTTTGGAATCAATCGCCGGATCCTCCCGTAACAGAGGATGTCGCTAAGAAAACGACGTCGTCGGTTGTTGAGGTCCAAAAGAATGGCGGTGGCTGTGGCGGTGTCGGTGCTTTTCAGCCATTTCAGAAGGAGAAAACTCCAATGAAAACAGAGGCGGCGGCGATCGTCTGTAAAAAGGTCGGTTCTTCTCCGGTGCCGGAGGCGACGACGAGTTCGACAGCGGAAACCGCCTCCAAAGGGAGCGGCGGAACTAGTAAACGAGAAGATAAGGAATCTCAGACTCATAGAAAACAGAGGCGATGCTGGTCGTCGGAGTTACACCGGCGATTCGTTCATGCCCTTCAACAACTCGGCGGCCCTCACGTTGCTACACCGAAACAAATCAGAGAGTTAATGAAGGTCGATGGGCTCACTAACGATGAAGTCAAAAGCCATTTACAGAAATACCGATTGCACGCAAGAAGGCCAACAAATTCTGCATTAATGCAAGACAGCGGCAGCTCATCGCCGCCGCAGCAATTCGTGGTGGTTGGAAGCATATGGGTACCGCCGCCGCCGACGCCGCCGAAGTACGCGGCGACGACGACAACGGAAGGAAGAAATGGGATTTATGCTCCGGTGGCGACGGCGTTGCGACGGCCGAAGACGGCGGAGGAAGGGAAGGGGAGCCACAGCGGCGGAATGGTTCGTTCGAATTCGCCGGCGACGTCTTCCTCCACTCACACCACCACAACCTCGCCGGCGGCGGCGTAG 1092 52.38 MDFVDNVLDIRVGMDLRHYADALDQERNKIQVFQRELPLCLELVTRAIDSCRQQLSGLSTASSEHTSSDGPVLEEFIPIKKVSANSHFENEGEEQSKPEKIEVGQLDWLKSAQLWNQSPDPPVTEDVAKKTTSSVVEVQKNGGGCGGVGAFQPFQKEKTPMKTEAAAIVCKKVGSSPVPEATTSSTAETASKGSGGTSKREDKESQTHRKQRRCWSSELHRRFVHALQQLGGPHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHARRPTNSALMQDSGSSSPPQQFVVVGSIWVPPPPTPPKYAATTTTEGRNGIYAPVATALRRPKTAEEGKGSHSGGMVRSNSPATSSSTHTTTTSPAAA 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3340474 3341945 + Lag0040257.1 Lac13g0461 591617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0461 363 SUPERFAMILY Homeodomain-like 207 267 IPR009057 -
Lac13g0461 363 MobiDBLite consensus disorder prediction 177 194 - -
Lac13g0461 363 Pfam Myb-like DNA-binding domain 212 263 IPR001005 -
Lac13g0461 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 207 267 IPR017930 -
Lac13g0461 363 MobiDBLite consensus disorder prediction 305 363 - -
Lac13g0461 363 NCBIfam myb-like DNA-binding domain, SHAQKYF class 210 265 IPR006447 GO:0003677(InterPro)
Lac13g0461 363 FunFam Myb family transcription factor 209 267 - -
Lac13g0461 363 Coils Coil 16 36 - -
Lac13g0461 363 Gene3D - 209 266 - -
Lac13g0461 363 MobiDBLite consensus disorder prediction 175 214 - -
Lac13g0461 363 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 15 332 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac13g0461 363 MobiDBLite consensus disorder prediction 195 214 - -
Lac13g0461 363 MobiDBLite consensus disorder prediction 339 363 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0461 Lac-Chr13:3340474 Lac3g0859 Lac-Chr3:6887729 5.00E-42 dispersed
Lac13g0461 Lac-Chr13:3340474 Lac8g1421 Lac-Chr8:31047508 7.40E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23155 None None None None Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0461 - - - 0.0