Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0465 ATGGCGGAGAAGCAGTTGATAGTGGTTGTTGAAGGTACTGCAGCCATGGGTCCCTTCTGGCAAACCGTCGTATCGGATTACATTGAGAAGATCGTCAGATGTTTCTGTGGAAATGAATTAACTGGGCAGAAACCACCAACCTCTAACGTTGAGTTCTCTCTGGTCACATTTCATACTCATGGATCGTATTGTGGCTGTCTAGTGCAGCGGACTGGGTGGACAAGAGATGTTGATATTTTCATACAATGGCTTTCAGCTATTCCCTTTTCTGGTGGTGGTTTCAGTGATGCTGCAATAGCTGAAGGGCTTGCTGAAGCACTTATGATGTTCCCAACTCAGCAAAATGGTGGCCAAAATCAACAAACTATGGACATGCAGAAGCACTGTATTCTTGTTGCTGCAAGTAATCCTTATCCCCTGCCAACGCCAGTATATAGACCAGCAGTGCAAAATTTGGAGCAACACGACAATGTTGAGCCACAGTCTGGGAGTTCTCAATCATATGCTGAGACAGTTGCTAAATCTTTTGCTCAGTGCTTCATATCTCTGTCAGTTATTTGTCCCAAACAGCTTCCAAAGCTAAGAGCAATTTACACTGCTGGAAAGCGCAACCAGCGGGCAGCAGATCCACCTATTGATAATATTAAAACCCCCTCATATCTTGTTTTGATCTCTGAAAATTTTGTGGAAGCCCGTGCTGCTTTAAGTCGTCCTGGAATTACTAGTTTACCTGCAAACCAAAGTCCTGTGAAAATGGACATATCTCCTGTTGTACCTGTTACAGGACCACCTCCAACCACTACTCCATCAGTAAATGGACCTATCATCAACCGGCTGCCAGTTTCTGTTGCTAGTGTGCCTCCTGCTACTGTGAAAGTTGAACCAAATACTGTTCCATCTATGACAAATGGATCTGCATATCCACCACATATGCCGTCTGTTGTTCGTGCAGCTTCACAGGGAGTCCCGAGCTTGCAGACTTCTTCACCACTTTCTTCTCAGGAGATGATCACAAATAATGAGAACACACAAGATCTTAAGCCTCTAGTGAATGGTGTTCCACAGCCTTTACGACCTGTGGGTCCAGCTAATGTTAGCATTCTGAATAATATTTCTCAAGCACGAGTGATGAGCTCTGCTACTTTAAATGGAGGAACCTCCATAGGACTCGCATCTATGGGTCAAACCCCAATGGCCATGCATGTATCCAATATGATATCCAGTGGAATGGGATCATCTGTGCCTGCTGCACAAAATGTATTTTCATCCGGTCAATCTGGTATGACATCAATAAATGGGTCTACAACTCTTACACAAGTTGCACCAAACTCAGGTCTAAGCTCACTTAGTTCAGCAAATAATAATATTTCTGGAAATTCAAACATTCCCACTTCACAAGCAGTAGGAAATCTCCAAGGTGGTGTTAGTGTGAGTCAATCAGTACCTGGGATTAGCCAAGGAAATCTTGCAGGGACGCAAGTGGTACAAGGTGGAATGGGCATGAACCAGAATGTTATTAGCAACCTAAGCCAACCAGGTGTTTCTACTGGAAATAGTACGATGATTCCTACTCCAGGAATGCCTCAACAAGTTCAAAATGGGATGCATTCACTTGGTGTGAACAACAATGCAGCAGCTAACATGCCATTATCACAACATACGGCAGGTGCTTTGCAACAAGCACAATCCAAATACGTGAAATTTTGGGAGGGAAATCTATCTGGTCAGAGACAAGGCCAGCCTGTTTTTATTACCAGAATGGAAGGTTACAGGAGTGCTTCAGCTTCTGATAAGCTTGCAGCAAACTGGCCGCAGACAATGCAAATAGTTCGGCTTATCTCACAAGATCACATGAATAACAAGCAATATGTTGGAAAAGCTGATTTTCTTGTTTTCCGAGCTATGAATCAGCATGGGTTTCTTGGTCAGCTTCAAGAAAAGAAACTTTGTGCAGTCATCCAGTTACCATCCCAGACTTTACTGCTATCTGTTTCTGATAAAGCTTGCCGTTTGATAGGGATGCTTTTTCCTGGGGATATGGTTGTGTTTAAGCCCCAAATACCCAGTCAACAGCAACAACAGCAGCAAATGCAACAGCAACAGATGCAACAACAGCTACAACAACATCCTCAACTGCAGCAACAGCATCAGCTTTCTCAGTTGCAACAACATCAACAACTTCCTCAGATGCAACAACAGCAGCAGCAGCTTACTCAGTTGCAACAACAGCAGCAGCAGCAGCATCCTCAACTGCAACAACAGCAGCAGCAGCATCCTCAACTGCAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACTTCCTCAAATGCAGCAGCAGCAGCAGCAGCATCCTCAAATACAGCAGCAGCAGCAGCAGCAACCACAATTGTCACAGCTTCAAACACAGCAGCAGATTCCACAAATGCAGCAACAGCAGCAACAAATGGTCGCCGGTGGTATCGGTCAATCCTATGTCCAAGGTCCAGGGCGATCACAATTAGTTTCACAGGGACAAGTCTCTTCCCAGGGCCAATCTAACATGCCCGGTGGAAGCTTTATGGGTTGA 2571 45.0 MAEKQLIVVVEGTAAMGPFWQTVVSDYIEKIVRCFCGNELTGQKPPTSNVEFSLVTFHTHGSYCGCLVQRTGWTRDVDIFIQWLSAIPFSGGGFSDAAIAEGLAEALMMFPTQQNGGQNQQTMDMQKHCILVAASNPYPLPTPVYRPAVQNLEQHDNVEPQSGSSQSYAETVAKSFAQCFISLSVICPKQLPKLRAIYTAGKRNQRAADPPIDNIKTPSYLVLISENFVEARAALSRPGITSLPANQSPVKMDISPVVPVTGPPPTTTPSVNGPIINRLPVSVASVPPATVKVEPNTVPSMTNGSAYPPHMPSVVRAASQGVPSLQTSSPLSSQEMITNNENTQDLKPLVNGVPQPLRPVGPANVSILNNISQARVMSSATLNGGTSIGLASMGQTPMAMHVSNMISSGMGSSVPAAQNVFSSGQSGMTSINGSTTLTQVAPNSGLSSLSSANNNISGNSNIPTSQAVGNLQGGVSVSQSVPGISQGNLAGTQVVQGGMGMNQNVISNLSQPGVSTGNSTMIPTPGMPQQVQNGMHSLGVNNNAAANMPLSQHTAGALQQAQSKYVKFWEGNLSGQRQGQPVFITRMEGYRSASASDKLAANWPQTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMVVFKPQIPSQQQQQQQMQQQQMQQQLQQHPQLQQQHQLSQLQQHQQLPQMQQQQQQLTQLQQQQQQQHPQLQQQQQQHPQLQQQQQQQQQQQQQLPQMQQQQQQHPQIQQQQQQQPQLSQLQTQQQIPQMQQQQQQMVAGGIGQSYVQGPGRSQLVSQGQVSSQGQSNMPGGSFMG 856
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3384414 3400922 + Lag0040261.1 Lac13g0465 591621

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0465 856 Pfam Mediator complex subunit 25 von Willebrand factor type A 3 226 IPR021419 -
Lac13g0465 856 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 25 1 844 - GO:0005667(PANTHER)|GO:0016592(PANTHER)|GO:0045944(PANTHER)
Lac13g0465 856 MobiDBLite consensus disorder prediction 823 856 - -
Lac13g0465 856 Coils Coil 751 781 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0465 K15168 - - csv:101203057 1220.3
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0465 Lac-Chr13:3384414 Lac13g0467 Lac-Chr13:3411963 1.10E-63 dispersed
Lac13g0465 Lac-Chr13:3384414 Lac13g0466 Lac-Chr13:3404078 1.60E-54 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g273 . Blo16g01055 . Bda11g01138 Bpe13g01334 . . . . Cmo18g01056 . Cma18g01038 . Car18g00964 . Cpe09g00279 Cpe01g01352 Bhi07g01363 . . Lac13g0465 . . . . . . . . . . . . Cone6ag0462 Cone9ag0474 Lsi04g00283 Csa05g02586 Chy10g01121 Cme10g00285 . . . Bda11g01138 . . . Bma06g00767 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007530 1 2 1 1 2 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36