Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0486 ATGAGAATGAAGCTGTTACCTTGGTTTGAATTTCTGAGAAATTGTACAGTCCTCGTGCAGAAGGAGAATCGATGGAGGATGTGGGGCAAGCAAGAGTCTCGACGGCACGACGGAAGAAGGTCGTCGGCACGGCGGATGTGGGTCGCCGGCGCGATGCGAGAGATGGACAGGGATGTTGTTCCTGATCAATGGAGTTCAGAGGTGTTTCTCTCTACTGACGGGGTGGTTGAACTTTGTACTCATTGTCCGACAAGAGGTTCTCAATGGAGTTCAGAGGTGTTTCTCTCTACTGACGGGGTGGTTGAACTTTGTACTCATTGTCCGACAAGCCCAAAGGTTGGGCCCAGGCCCAAGCCCAGGTCCACCAAACTGGAGGCCACCATTCATTTTGGGCATTCAGACAGAGTCAGAGAAGCCATAGCCCAGAGCATTCTCCCAAGTCCAGAGTCTTCAGAAGTCAGAGAGTCCAAAGAATTCAAAATTCGGCCATCTCCAGACTGTTTCTTAGATACAATGTTCTTAGCCTCACCAACTCTAATTGGGCTTGGTCAAGACTATTGGTTGATTCCCCAATCTCACTATTACTCAGCCTTACTTTATAGCTTCAATGGTATTAGCATAATTCTCTCGAATCCGGCCATCGGACCTGCTGCTGCTGTGATCTTGCATCTTCGTGAAGGCAGCGATCAAGTTCCGAAGATGAAGATTTTTGTCAAGACTCTCAAGGGCTCGCACTTCGAAATCGAAGTTCAGCCTCAAGATACGGTTGCTGATGTGAAGAAAAACATAGAAACTGTTCAGGGTGCCGATGTTTACCCTGCTGCACAACAAATGCTTATCCATCAAGGAAAAGTCCTTAAAGACGGCACAACACTGGATGAAAATAAAGTTGCCGAAAATAGTTTTGTTGTAATTATGTTAACAAAGAATAAAAGTTCATCGGGTGGGACATCTTCTACCACACAAGCTGCACCAGTGTCGAAGGCACCACAGAACACTGCCCCTGCACCTGCTGCCACTCCAGTCTCAACATCTGAAGTTCATCTACCAACTTCAGCTCCACCTGCTACTATTATCGAATCTTCTCCTCCTGCTCCTGCTCCTGCTCCGACTCCGACTCCGACTCCGACTCCAGCTCCAGCTCCGGCTCCGGCTCCTGCAACCACTGTTTTGCCAGAATCTGATGTCTACAGCCAAGCAGCTTCTAACCTGGTTGCTGGTAGTAACTTGGAGGAGACTATCCAACAGATTCTTCTCATGGGCGGAGGGATTTGGGATAGGGACACAGTCGTACGAGCTCTTCGTGCTGCTTACAATAATCCAGAAAGGGCTGTGGATTACCTTTATTCTGGCATACCTGAGCAAGTTGAAGTTCCACCTACTGCTCGAGTTCCATCTTCTGGGCAAGCAACCAACCCTTCTGCTGCTCAACCTGCACAGCCAGCCCAACCTGCGTCTGTGCCATCAACTGGTCCAAATGCTAATCCATTAGATCTCTTTCCTCAGGGTGTGCCTAATTTAGCTTCTGGAGCTGTTGGTTCTGGCAGTCTCGATTTTCTACGAAATAGTCCTCAGTTCCAAGCTTTGCGAGCCATGGTGCGAGCTAACCCTCAGATACTCCAGCCTATGCTTCAAGAGTTGGGTAAACAAAATCCTCAGCTGATTAGACTTATTCAAGATCATCAACCTGACTTCCTCCGCTTAATTAATGAGCCCCTTGAAGGAGAAGGGAATATACTTGGTCAGCTTGCTGAGGCTATGCCGCAGGCCATAACTGTAACCCCCGAGGAGCGTGAAGCCATTCAACGGCTTGAGGACTTGGGTTTCGACAGAGCTCTAGTAGTGGAGGTCTTCTTCGCCTGCAACAAGAACGAGGAAATGGCTGCCAACTACCTTTTAGATCATATTCACGAATTTGAGGGTAATCAGAATTAG 1935 48.37 MRMKLLPWFEFLRNCTVLVQKENRWRMWGKQESRRHDGRRSSARRMWVAGAMREMDRDVVPDQWSSEVFLSTDGVVELCTHCPTRGSQWSSEVFLSTDGVVELCTHCPTSPKVGPRPKPRSTKLEATIHFGHSDRVREAIAQSILPSPESSEVRESKEFKIRPSPDCFLDTMFLASPTLIGLGQDYWLIPQSHYYSALLYSFNGISIILSNPAIGPAAAVILHLREGSDQVPKMKIFVKTLKGSHFEIEVQPQDTVADVKKNIETVQGADVYPAAQQMLIHQGKVLKDGTTLDENKVAENSFVVIMLTKNKSSSGGTSSTTQAAPVSKAPQNTAPAPAATPVSTSEVHLPTSAPPATIIESSPPAPAPAPTPTPTPTPAPAPAPAPATTVLPESDVYSQAASNLVAGSNLEETIQQILLMGGGIWDRDTVVRALRAAYNNPERAVDYLYSGIPEQVEVPPTARVPSSGQATNPSAAQPAQPAQPASVPSTGPNANPLDLFPQGVPNLASGAVGSGSLDFLRNSPQFQALRAMVRANPQILQPMLQELGKQNPQLIRLIQDHQPDFLRLINEPLEGEGNILGQLAEAMPQAITVTPEEREAIQRLEDLGFDRALVVEVFFACNKNEEMAANYLLDHIHEFEGNQN 644
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3518534 3530841 - Lag0040282.1 Lac13g0486 591642

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0486 644 MobiDBLite consensus disorder prediction 459 501 - -
Lac13g0486 644 Pfam Ubiquitin family 236 309 IPR000626 GO:0005515(InterPro)
Lac13g0486 644 Pfam XPC-binding domain 517 572 IPR015360 GO:0003684(InterPro)|GO:0006289(InterPro)|GO:0043161(InterPro)
Lac13g0486 644 SUPERFAMILY XPC-binding domain 513 578 IPR036353 GO:0003684(InterPro)|GO:0006289(InterPro)|GO:0043161(InterPro)
Lac13g0486 644 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 594 635 IPR015940 -
Lac13g0486 644 MobiDBLite consensus disorder prediction 311 356 - -
Lac13g0486 644 SMART ubq_7 234 308 IPR000626 GO:0005515(InterPro)
Lac13g0486 644 MobiDBLite consensus disorder prediction 311 389 - -
Lac13g0486 644 FunFam UV excision repair protein RAD23 homolog 403 453 - -
Lac13g0486 644 FunFam UV excision repair protein RAD23 B 508 573 - -
Lac13g0486 644 Gene3D - 231 313 - -
Lac13g0486 644 SMART CBM 515 558 IPR006636 -
Lac13g0486 644 CDD Ubl_Rad23 234 307 - -
Lac13g0486 644 MobiDBLite consensus disorder prediction 462 496 - -
Lac13g0486 644 SUPERFAMILY Ubiquitin-like 234 312 IPR029071 -
Lac13g0486 644 NCBIfam UV excision repair protein Rad23 234 640 IPR004806 GO:0006289(InterPro)
Lac13g0486 644 Pfam UBA/TS-N domain 597 632 IPR015940 -
Lac13g0486 644 Pfam UBA/TS-N domain 411 448 IPR015940 -
Lac13g0486 644 SUPERFAMILY UBA-like 577 638 IPR009060 GO:0005515(InterPro)
Lac13g0486 644 FunFam UV excision repair protein RAD23 homolog 588 636 - -
Lac13g0486 644 Gene3D - 403 453 - -
Lac13g0486 644 MobiDBLite consensus disorder prediction 357 387 - -
Lac13g0486 644 SMART uba_6 597 634 IPR015940 -
Lac13g0486 644 SMART uba_6 410 450 IPR015940 -
Lac13g0486 644 FunFam UV excision repair protein RAD23 234 313 - -
Lac13g0486 644 SUPERFAMILY UBA-like 407 458 IPR009060 GO:0005515(InterPro)
Lac13g0486 644 PRINTS DNA repair protein Rad23 signature 608 622 IPR004806 GO:0006289(InterPro)
Lac13g0486 644 PRINTS DNA repair protein Rad23 signature 543 565 IPR004806 GO:0006289(InterPro)
Lac13g0486 644 PRINTS DNA repair protein Rad23 signature 591 607 IPR004806 GO:0006289(InterPro)
Lac13g0486 644 PRINTS DNA repair protein Rad23 signature 623 638 IPR004806 GO:0006289(InterPro)
Lac13g0486 644 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 408 451 IPR015940 -
Lac13g0486 644 Gene3D - 507 572 IPR036353 GO:0003684(InterPro)|GO:0006289(InterPro)|GO:0043161(InterPro)
Lac13g0486 644 PANTHER UV EXCISION REPAIR PROTEIN RAD23 234 633 - GO:0005654(PANTHER)|GO:0005829(PANTHER)|GO:0031593(PANTHER)|GO:0043130(PANTHER)|GO:0043161(PANTHER)|GO:0070628(PANTHER)
Lac13g0486 644 CDD UBA1_Rad23_plant 404 453 - -
Lac13g0486 644 ProSiteProfiles Ubiquitin domain profile. 234 312 IPR000626 GO:0005515(InterPro)
Lac13g0486 644 Gene3D - 589 636 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0486 K10839 - - csv:101220491 629.787
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0580 Lac-Chr11:5895201 Lac13g0486 Lac-Chr13:3518534 1.20E-107 dispersed
Lac13g0486 Lac-Chr13:3518534 Lac1g3023 Lac-Chr1:50910335 4.80E-24 dispersed
Lac13g0486 Lac-Chr13:3518534 Lac6g3021 Lac-Chr6:47815715 3.80E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g298 . . . . . Bpe10g00939 Bma14g01707 Bma15g00085 . Cmo18g01038 . Cma18g01028 . Car18g00948 Sed06g1882 Cpe09g00295 . Bhi07g01334 Tan04g0868 Cmetu10g1073 Lac13g0486 Hepe01g1200 . . Cla05g02307 . Cec05g2503 Cco05g2545 . . Cre05g2454 Cone13ag0836 Cone19ag0843 . . Lsi04g00262 Csa05g02604 Chy10g01139 Cme10g00268 . Blo11g00839 Bda07g01534 . Bpe11g01698 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004990 1 1 1 2 2 0 2 1 1 1 1 0 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 2 2 41