Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0490 ATGCCGCATTCTGATCTGAAAAGTGTTGGCAGCAGAAAGTCCAAACTGCCAAAAAATTTCTCTGAAGATCCAAAAATGGGGAGAAAAGTTCGTATAATCTGTTACGATCCTGATGCCACTGACTCGTCTTCAAGCGAAGATGAAGGAGAAATATACGCAAGAAGAAACCCCAACAGAAAGAACCGAATCGTTCATGAAATCCACCTGCCTGCGCCGAGAAATGCTCTCGAATCTGAGAGTTCTCAGAACAGCAACAGCGAAAACAAAAACCCCAAGCTCAAGCAGACGAAGGTTCTGTTAAAAAACCCCAACTCTCGAAGACCATCGTCTTCGAAATACAGAGGAGTGAGACAGAGAGCTTGGGGAAAATGGGCGGCTGAGATTCGAGATCCGTTTAAGAGAAGCCGTGTTTGGCTTGGTACTTACGATACTGCGGAAGAAGCTTCTCAAGCTTATGAGTCGAGAAGGCTGCAGTTTGAAGCTATGGCGGCGGAAATGGCCGTTGAAGAAGGAAACAGCGGTGGATCCTCCTCTGCCGTGTCGGAGCAGCCTGTTAGTTCGGAGAGCACGGCGGAGACCACCGTATCCCACACATCGCCGTCGTCGGTTTTCGAATGGGACGATTCGACTTCACAGAGCCATGATTTGAAAGAGGGAGAATCTATCAAAGAAGAAACAGACACGAATATGAACTATCTTCAAGAGGCGGATCAGGGTAATCTGTTCATGGACGAAATAAACATGGGGATTGAATTTGATTCGATTCTTGCAGATGGAATCGGGACGTTCTTGGAGGATTTTGCAAGTTTGGACGACACCCAGATGTTTGAATTTGCTGACGATGAACCGAGCGGCCTTCTGGATTGGGATTTTGGGGATTTTGGGAACGATGACATTTCTTATTGGCTTGATGAACCCATCAACATACCCTGCTCTTAA 939 46.75 MPHSDLKSVGSRKSKLPKNFSEDPKMGRKVRIICYDPDATDSSSSEDEGEIYARRNPNRKNRIVHEIHLPAPRNALESESSQNSNSENKNPKLKQTKVLLKNPNSRRPSSSKYRGVRQRAWGKWAAEIRDPFKRSRVWLGTYDTAEEASQAYESRRLQFEAMAAEMAVEEGNSGGSSSAVSEQPVSSESTAETTVSHTSPSSVFEWDDSTSQSHDLKEGESIKEETDTNMNYLQEADQGNLFMDEINMGIEFDSILADGIGTFLEDFASLDDTQMFEFADDEPSGLLDWDFGDFGNDDISYWLDEPINIPCS 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3591616 3592554 + Lag0040286.1 Lac13g0490 591646

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0490 312 SMART rav1_2 112 175 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac13g0490 312 MobiDBLite consensus disorder prediction 171 209 - -
Lac13g0490 312 Pfam AP2 domain 111 161 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac13g0490 312 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 29 206 IPR050913 -
Lac13g0490 312 MobiDBLite consensus disorder prediction 75 111 - -
Lac13g0490 312 MobiDBLite consensus disorder prediction 171 223 - -
Lac13g0490 312 CDD AP2 111 152 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac13g0490 312 PIRSF PTI6 7 303 IPR017392 GO:0003700(InterPro)
Lac13g0490 312 MobiDBLite consensus disorder prediction 47 67 - -
Lac13g0490 312 Gene3D AP2/ERF domain 111 167 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac13g0490 312 ProSiteProfiles AP2/ERF domain profile. 112 169 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac13g0490 312 MobiDBLite consensus disorder prediction 1 114 - -
Lac13g0490 312 MobiDBLite consensus disorder prediction 1 35 - -
Lac13g0490 312 PRINTS Ethylene responsive element binding protein signature 135 151 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac13g0490 312 PRINTS Ethylene responsive element binding protein signature 113 124 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac13g0490 312 SUPERFAMILY DNA-binding domain 111 159 IPR016177 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0490 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0490 Lac-Chr13:3591616 Lac7g0485 Lac-Chr7:3861590 5.10E-27 dispersed
Lac10g0233 Lac-Chr10:1818909 Lac13g0490 Lac-Chr13:3591616 8.40E-23 wgd
Lac13g0490 Lac-Chr13:3591616 Lac8g1361 Lac-Chr8:29834300 1.80E-53 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g303 . Blo16g01062 Bda01g02077 Bda11g01147 Bpe13g01346 Bpe10g00938 . Bma15g00086 Cmo04g01583 Cmo18g01035 . Cma18g01025 Car04g01564 Car18g00945 Sed11g1612 . . Bhi07g01328 Tan04g0862 Cmetu03g2262 Lac13g0490 Hepe01g1195 . . Cla05g02303 Cam05g2476 Cec05g2499 Cco05g2541 Clacu05g2471 Cmu05g2333 Cre05g2450 . . Cone13ag0288 . Lsi04g00259 Csa05g02608 Chy10g01143 Cme10g00264 . . . Bda11g01147 . Bpe02g02269 Bma01g00167 Bma06g00759 . . Cmo15g00939 . . . Car15g00843 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001455 2 2 1 3 3 2 4 2 2 2 2 2 4 2 2 4 2 3 3 2 2 2 2 2 2 2 2 3 5 1 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23156 PF00847 AP2 1.90E-12 CL0081 Lac TF