Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0498 ATGACGACGAGGAAAAGCGTGGAGAAAACAGCTGAGGGTGGCAAGACCGCCAGAGCCTGCGATAGCTGTATCAGCAAGCGGGCTCGGTGGTACTGTGCCGCTGATGATGCTTTTCTGTGCCAAGCTTGTGATGCTTCGGTCCACTCCGCCAACTCCTTGGCTCGTAGGCACGAGCGAGTTCGTCTTCAAACTGCCTCTTTCAGATCCTCTTCTGACAAGTCCTCTGCTGCCTCATGGCACCAGGGCTTCACCAGAAAGCCACGCTCGCCTCGAATGGGAAAGACTTCTCTGGCGAGGAAGCCATTCCCTCAGGTACCCGAGGTGAGTGCTAAAGAAGAAACTGAGGATCATGAGCAGCTCCTCCTTCATCGAGTTCCTGTATTGGGAGCCAATTCGAAAGACGGTAATTTGGCTAGTTTTGTTGGGGAGAGAGAAAATTCAAATGGATATCTCTCGTATGATATGGATCCTGCTGAATTTGCGGCTGATGTTGAGAGTTTGTTGGGGAACTCGCTTGATAATGAATGCTTTGATATGGAAGAATTGGGGCTGGCAGCTTCCAAAGACGACTCGACGACGATGGATGATTACTCTTTTAACAGCTGCGAAGTTATTAAGATTGAACCAGATGAGATTGAGGATCTTAATCCGATGCTCGGTATAGAGGCCGATACGATGAGGGAGCCATTTGAGCTGAACTTTATGGACTTCGGCAGCAATCCGACGTCCTGCGGTGAGGAAGAGAAGGTGATGGTGGAAGTGATGACAGTGGTGAAGAACGGTGATCTTGAGATGGAAGAGACGAAGATTGTAAAAAACAAAAAGAAAATATCATTGAGTTTGGATAGTGAAGCAGTGATAATAGCTTGGGGGAGCAGAGGAACTCCGTGGACGTCCGGTGATCGGCCGAATCTCGACCTCGATTATTACTGGCCGGACTACATGGGTACGTGCGAGAGTGAATATTATTATCCCGCTTATGGGGAGGTTGGCGGCGGAATCAGCCGACAAGCGGCGGCCGGAGTTGAAGGAGAGAGAGAAGCACGAGTGTCGAGATACAGAGAGAAGAGAAGGACGAGATTATTTGCAAAGAAAATAAGATATGAAGTTCGGAAATTGAATGCAGAGAAGAGACCAAGAATGAAAGGGAGGTTTGTGAAGAGATCGTCTTGCTTTGCACCACCACCTTTGCCTTTGTTTAATTAA 1206 48.59 MTTRKSVEKTAEGGKTARACDSCISKRARWYCAADDAFLCQACDASVHSANSLARRHERVRLQTASFRSSSDKSSAASWHQGFTRKPRSPRMGKTSLARKPFPQVPEVSAKEETEDHEQLLLHRVPVLGANSKDGNLASFVGERENSNGYLSYDMDPAEFAADVESLLGNSLDNECFDMEELGLAASKDDSTTMDDYSFNSCEVIKIEPDEIEDLNPMLGIEADTMREPFELNFMDFGSNPTSCGEEEKVMVEVMTVVKNGDLEMEETKIVKNKKKISLSLDSEAVIIAWGSRGTPWTSGDRPNLDLDYYWPDYMGTCESEYYYPAYGEVGGGISRQAAAGVEGEREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRSSCFAPPPLPLFN 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3642787 3644110 + Lag0040294.1 Lac13g0498 591654

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0498 401 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 12 392 IPR052453 GO:0005634(PANTHER)|GO:0006355(PANTHER)
Lac13g0498 401 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270(InterPro)
Lac13g0498 401 SMART bboxneu5 15 62 IPR000315 GO:0008270(InterPro)
Lac13g0498 401 Pfam B-box zinc finger 17 60 IPR000315 GO:0008270(InterPro)
Lac13g0498 401 Pfam CCT motif 346 388 IPR010402 GO:0005515(InterPro)
Lac13g0498 401 CDD Bbox1_BBX-like 19 62 IPR049808 -
Lac13g0498 401 MobiDBLite consensus disorder prediction 65 98 - -
Lac13g0498 401 MobiDBLite consensus disorder prediction 65 82 - -
Lac13g0498 401 ProSiteProfiles CCT domain profile. 346 388 IPR010402 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0498 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0498 Lac-Chr13:3642787 Lac8g2538 Lac-Chr8:43156507 4.10E-13 dispersed
Lac9g2075 Lac-Chr9:40369862 Lac13g0498 Lac-Chr13:3642787 1.80E-06 dispersed
Lac3g0282 Lac-Chr3:2014793 Lac13g0498 Lac-Chr13:3642787 3.30E-09 transposed
Lac13g0498 Lac-Chr13:3642787 Lac3g0480 Lac-Chr3:3656391 1.10E-58 wgd
Lac13g0498 Lac-Chr13:3642787 Lac8g1345 Lac-Chr8:29473274 3.80E-35 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g308 . . . . . Bpe10g00936 Bma14g01712 Bma15g00088 Cmo04g01578 Cmo18g01030 . Cma18g01020 Car04g01559 . Sed08g0353 Cpe09g00303 Cpe01g01788 Bhi07g01322 Tan04g0850 Cmetu03g1640 Lac13g0498 Hepe01g1190 . . Cla05g02298 . . Cco05g2536 . . . . . Cone13ag0287 Cone19ag0279 Lsi04g00253 Csa05g02613 Chy10g01148 Cme10g00258 Blo06g00962 Blo11g00848 Bda07g01539 . Bpe11g01703 . . Bma06g01024 . Cmo04g02148 . Cma04g02049 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002023 2 2 2 3 2 2 4 2 2 2 2 2 4 2 2 4 2 2 2 2 2 2 1 2 1 2 2 4 2 1 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23158 PF00643 zf-B_box 2.00E-07 No_clan Lac TF