Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0499 ATGAGTTGCAATGGTTGTCGAATCCTTCGCAAAGGTTGCAGCGATGACTGTATAATTAGACCTTGTCTTCAATGGATTCCCTCGCCCGATGCTCAAGCCAACGCCACCATTTTTCTCGCCAAATTCTACGGCCGCGCCGGCCTCTTCAACCTCATCACCGCCGCCGCCCAACACCTCCGCCCTGCAATTTTTAAGTCGTTGCTGTACGAGGCGTGCGGGCGGATGGTGAATCCTGTGTATGGTTCCGTCGGCTTGCTCTGCTCCGGCGACTGGGAAAGGTGTCAGGCCGCCGTCGACGCCGTGTTGAACGGATCCATGAACGTCGAACCCGACGCGCCGCCGTCAAACGCTAACCTTTCCCTCAAATGCTGCGACATTCGCCATGTCTGTAACGACACCAATTTGGCTGTTTCCGGCGAGCTTCTCAAGGTCAAGCCTCGGAGCCGGTTCAAGAAGCCCGAAAACCGAACCAAACCCAAACCGGGACCGGCTCATGAATTGGGAAGTGGGTCTAATGCGGATGAGTCCGACGCGAACCGCCGGGTGGAGGATTTAATGATGAACCAGTGGAACCCGGGCCGGGTTGTGAGAAATGGAAGCCGGTTTGAGGAGGAGGATGTTGAGCTGGAACTGACTCTTAATTCGGCTCAGTAA 654 55.81 MSCNGCRILRKGCSDDCIIRPCLQWIPSPDAQANATIFLAKFYGRAGLFNLITAAAQHLRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWERCQAAVDAVLNGSMNVEPDAPPSNANLSLKCCDIRHVCNDTNLAVSGELLKVKPRSRFKKPENRTKPKPGPAHELGSGSNADESDANRRVEDLMMNQWNPGRVVRNGSRFEEEDVELELTLNSAQ 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3647499 3648783 - Lag0040295.1 Lac13g0499 591655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0499 217 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Lac13g0499 217 MobiDBLite consensus disorder prediction 146 217 - -
Lac13g0499 217 Pfam Lateral organ boundaries (LOB) domain 2 99 IPR004883 -
Lac13g0499 217 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 213 - GO:0010468(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0176 Lac-Chr11:1645405 Lac13g0499 Lac-Chr13:3647499 3.40E-48 dispersed
Lac13g0499 Lac-Chr13:3647499 Lac1g2647 Lac-Chr1:47799439 2.00E-38 dispersed
Lac13g0499 Lac-Chr13:3647499 Lac3g0479 Lac-Chr3:3652801 1.90E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23159 PF03195 LOB 3.40E-23 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0499 - - - 0.0