Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0509 ATGGCTGAAGCAAAATTAAACCCAGCAGCGGAAAAGAGGGTGATGGTGGCCATAGATGAGAGCGAGTGTAGCTATTATGCCCTCATCTGGGTGCTCGAAAATCTTAAAGAATCCATAGCCGATTCGCCCCTTTTCATCTTCACAGCTCTACCTCCGCCCATCAGTTATACATCCGGTGCCGGTGCATCTCTTGGCCTCGCACGCTCGTATTTCCCTGTTGCATCCAATACGGAGTTGGCTTATACTCTTCAAGAGAATGATAAGAAAGTTAGATGCGGCCTCCTCGAGAAAGCAAAGGATATATGCGCTGAAAGAGGGGTGGCTGCTATATCCATCACAGAGGTCGGGGATCCTGGAACAACCATATGTGATACAGTTGAAAAGCTCAATATAAGTTTGCTTGTTTTAGGTGATCGTGGCCTTGGAAGAATTAAGAGAGCTCTTATAGGGAGTGTGAGCAACTATTGTGTTCAAAATGCCAAGTGCCCTGTACTTGTTGTGAAGAAACCGTAG 513 46.39 MAEAKLNPAAEKRVMVAIDESECSYYALIWVLENLKESIADSPLFIFTALPPPISYTSGAGASLGLARSYFPVASNTELAYTLQENDKKVRCGLLEKAKDICAERGVAAISITEVGDPGTTICDTVEKLNISLLVLGDRGLGRIKRALIGSVSNYCVQNAKCPVLVVKKP 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3726226 3733737 - Lag0040305.1 Lac13g0509 591665

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0509 170 Gene3D HUPs 6 170 IPR014729 -
Lac13g0509 170 PRINTS Universal stress protein signature 128 140 IPR006015 -
Lac13g0509 170 PRINTS Universal stress protein signature 146 168 IPR006015 -
Lac13g0509 170 PRINTS Universal stress protein signature 11 29 IPR006015 -
Lac13g0509 170 CDD USP_Like 13 167 - -
Lac13g0509 170 Pfam Universal stress protein family 12 168 IPR006016 -
Lac13g0509 170 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 12 169 - -
Lac13g0509 170 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 11 170 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0509 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0509 Lac-Chr13:3726226 Lac4g2433 Lac-Chr4:43796681 3.60E-19 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g322 . . . . . . . . . . . . . . . . . Bhi07g01312 . . Lac13g0509 . . . . . . . . . . . . . . . Csa05g02624 Chy10g01159 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007321 0 6 0 0 0 1 1 1 1 2 1 1 1 1 1 1 1 5 1 1 1 1 1 1 1 0 1 1 0 3 36