Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0512 ATGTTGCAGTTGCAGGCTTCCTTCAATCCAATTCAATTCCCACATACCAAAGCCTCCTCATCCTTACGCCTGAGATCGCCCATGCTCATCAAAACCTCCATCTCTCAAACAGTTCTTCATCTCAATCTCAAGGCCGCCAGGATGAATCACTTCCAAGATTTTGAGCTCCAAGTTCGTAATTATGAGCTGGATCAGTTCGGTGTTGTCAACAATGCTGTTTATGCAAATTATTGCTCCAACGGTCGTCAAGAATTGATGGAAAGAATAACAGGCGTCAGTGCTGATGCAGTAGCTCGCAGTGGGAATGCACTCGCTTTATCAGATTTGTCTTTCAAGTTCCTTGCACCACTTAGAAGTGGAGACAGATTTGTTCTTAAGGTCAGGATCTCAAGCACCACAACCACTCGCATCTACATTGATCACTTAATTTTCAAGCTTCCAAATATGGAGTCGATCTTAGAGGCAAAGGCTACTGCAGTTTGGCTCGATCAAAATTATCGTCCAATGCGTATCCCACAAGAATATTTAACCAAACTTGCTCAATTTGTTCGAGATCATGAGTCCAAGTGA 570 43.16 MLQLQASFNPIQFPHTKASSSLRLRSPMLIKTSISQTVLHLNLKAARMNHFQDFELQVRNYELDQFGVVNNAVYANYCSNGRQELMERITGVSADAVARSGNALALSDLSFKFLAPLRSGDRFVLKVRISSTTTTRIYIDHLIFKLPNMESILEAKATAVWLDQNYRPMRIPQEYLTKLAQFVRDHESK 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3754288 3755289 - Lag0040308.1 Lac13g0512 591668

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0512 189 Pfam Thioesterase-like superfamily 58 177 - -
Lac13g0512 189 Gene3D Hotdog Thioesterase 40 186 - -
Lac13g0512 189 PANTHER 4-HYDROXYBENZOYL-COA THIOESTERASE FAMILY MEMBER 28 187 IPR050563 GO:0009507(PANTHER)|GO:0016297(PANTHER)
Lac13g0512 189 CDD 4HBT 54 163 - -
Lac13g0512 189 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 51 187 IPR029069 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0512 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0510 Lac-Chr13:3735863 Lac13g0512 Lac-Chr13:3754288 2.40E-69 dispersed
Lac13g0511 Lac-Chr13:3742755 Lac13g0512 Lac-Chr13:3754288 1.10E-63 tandem
Lac13g0512 Lac-Chr13:3754288 Lac13g0513 Lac-Chr13:3758106 2.70E-60 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g325 . . . . . . . . . Cmo18g01019 . Cma18g01010 . Car18g00931 . Cpe09g00313 . Bhi07g01306 . . Lac13g0512 Hepe01g1177 . . Cla05g02287 Cam05g2460 Cec05g2480 . Clacu05g2455 Cmu05g2316 Cre05g2434 Cone13ag0822 Cone19ag0828 . . Lsi04g00242 . . Cme10g00245 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002243 1 4 1 1 1 2 4 1 1 1 2 2 2 3 2 2 2 1 3 2 1 2 3 5 5 1 2 2 1 2 62