Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0519 ATGCTAACCACGTTTACGCCCATTCATAACAGCGACGGTGGTGGTGCCGTCGTCGCCATGGCTGCTGCTCCGGTGAACTCGTCAATGGAATCATGTTCCAGAATCCTCGCCTTGGAATCTCCTATTCTCATATTTGTTTTCTTTCACAAGGCTATCCGCGCTGAGATTGATCGCTTCCATCGCGACGCCATGGAATTCGCCACCAACCAGCAAAGTGGCGGCGATATTGCGCCGTTGTTGCAGCGCTACCACTTCCTTCGAGCTCTTTATAAGCATCACTGTAACGCTGAGGACGAGGTCATCTTCCCGGCTCTAGATCAGCGAGTGAAAAATGTGGCAAGTACTTATTTCCTTGAACATGAAGGGGAAAGTGTTCTGTTTTGCCAATTGCTTGAGCTTCTGAATTCTAATGCGTTGGAGGAAGGAAGCTATAAGAGGGAGCTGTCATCTTGTGTCAGAGCTCTTCAGATATCAATATGCCAGCATATGTTCAAGGAGGAGGAACAGGTGTTTCCGTTACTTGTTGAGAAGTTTTCTTTTGAAGAACAGGCATCCTTAGTATGGAAATTTCTTTGTAGTATACCTATTAAAATGCTGGAGGTCTTTCTTCCGTGGCTTTCTTCCTCTATATCTCCAGATGAACATCAGATTATGTGTAAATGCTTGAGCAAAATTATACCCGAGCAAAAGCTTCTTCAGAAGGTAATATTTTCCTGGATGGAGGATGCAAGAACGACTCATGCCAATAAAAAATTGTATGGTGACAATTTAGAGTTTCAATGTTTAGGCACTCAGGTCTGTGATCTTATATGTAGGCCAGAGAAGGGGACTGACACTTCTGAATCAACTAGAACTGGTAAAAGGAAATACGTGGAGCAAATTAATTTTACCTATTCTACTGTTTCAGTTGCTTGTCCCATCAACGAAATATGTCATTGGCATAATGCTATAAAAAAAGAACTAAATAGCATAGCTGAGGCAGCTAGAGATCTTCCATTGTCGTCTGATTTTTCTGAGTTGTCTGCACTTAAGGAGAGACTGCAGTTTATTGCAGAAGTCTGCATCTTCCACTGCATTGCCGAGGATAAAGTTATATTCCCTGCTGTAGATGCTGAACTATCTTTTGCTGATCAGCATGCTGAAGAAGAAATTCAATTTGATAAGCTTAGGCACTTGATAGAAAGTATCCAATCCGATAGAGCTAAATATACTTCTGCTGAAATTCATAAAAAGTTAAGTTCTCATGCTGATCAAATTATCAAGACTATACAGAAGCACTTCCATGATGAGGAAATGCATGTTCTTCCACTTGCTCGGAAGCATTTTGGCCCCCAGAGGCAGCGAGAACTTCTGTATCACAGCTTATGCATAATGCCCTTGAAGTGGATAGAGCGTGTCTTACCTTGGTTGGTAGAAACACTTACTGAAGAAGAAGCCAGATCTTTTCTTCAGAATATGCAAATGGCAGCTCCAGTGTCGGATCATGCACTCGTTACACTATTTTCTGGTTGGGCATGTAAAGGCCATCCCAGGAGCATTTGTTCTTCTGCAAGTGCTATTAACTATTGTCCTGAACGGATATTGACTGAAGATGAAGAATCATGCTCCTTTTCTCCTGCCAGGGAAAAACCTTCATGCAATCAGGCAACTGAGTGTGCCAGGCCATCCAAGTCTGGGAAGGCAGTATGCCATGGAGACTTAAATGGCCGTTCTCCTTTGAAAAACCCGAGCAAAAAACTTCATTTCACTCGTGTAAAACAATCTGCTTGTGTCCCTGGGTTAGGAGTGGATGACAATAATTTAGGAATGAGATCTTTGGCAGCAGCAAAATCACTGCGCTCTTTGTGTTTTGGACCCTATGCTCCTTCTCTCAACTCCGGTCTCTTTAGTCTAGAAAATGATCCAATCTCTTGTAGCAGTGGTTCTAAGTCAAGGCCAATTGATAACATATTTAAATTTCATAAAGCAATAAGCAAAGACTTGGAGTATTTGGATAATGAATCTGTGAATCTCGGTGATTGCAATGATAATTTCTTTAGGCAATTTTGTGGTAGGTTTCATCTGTTGTGGGGTCTGTATAAAGCTCATAGTAATGCAGAGGATGATATAGTATTTCCTGCATTAGAATCAAAAGAAGCTCTTCATAATGTGAGCCACTCCTATACGTTAGACCACAAACAGGAGGAAGAGCTATTTGAAGGTATTTCTGCTGCACTTTCTAAGCTGACAAACCTTCGCAGAGACTTGAATGGTAAGACAAAACATAACCATTCAGATTGGGTGAAGTCTCATACCTCCGATATTGATGATACTGCGAGAATGAATATTGAGCTGGCAACAAAGCTCCAGGGCATGTGCAAATCAATTAGAGTGACACTTGACCAACATATTTTTCGTGAGGAATCGGAATTGTTGCCGTTGTTCCATTTATATTTTTCTCTGGAAGAACAAGATAAAATTGTTGGTAGAATAATTGGTACTACAGGTGCTGAGGTCCTTCAATCAATGTTGCCTTGGGTAACTTCTGCACTTACTCAGGAGGAGCAAAATAAGATGATGGATACATTGAAGCAGGCAACCAGAAATACAATGTTTAGTGACTGGCTAAATGAATGGTGGGAAGGATCTGCTGCATCTCCACATTATATGGAATCTGTCAGTCATATACCTGGAGATTCTGATTCCCATAGCATATGTGATCAAAAAGATGATTCGGTTTTCAAGCCAGGATGGAAAGAAATTTTTAGGATGAACGAAAATGAACTTGAATCAGAAATAAGAAAGGTTGCTCGGGATTCAAGCATTGACCCTAGGAGAAAAGATTATCTTATCCAGAACTTGATGACCAGTCGCTGGATAGCTTCTCAGCAGATGCTACCCCAAACAACTACAGGTGAAAACTCAGATGCAAACAAACTGATCGCAAGTGCCCCATCATTTCGTGACCCTAAGAAACAGATTTTTGGGTGTGAGCATTATAAAAGAAATTGTAAACTGCTTGCAACCTGTTGTGGAAAGTTTTTTACTTGTAGTTTCTGTCATGATAAAGTCAGTGATCATTCAATGGACAGGAAGGCTTCAACTGAAATGATGTGTATGCGCTGCCTCAAAGTTCAGCCTATTGGATCTGTTTGCACAACACCATCCTGTGGTGGTTTCTCTATGGCAAAGTACTACTGTAGTATTTGCAAACTTTTTGATGATGAAAGGGAAGTCTATCATTGTCCTTTCTGCAATATATGTCGTCTTGGGAAGGGACTTGGTACTGATTTTTTTCATTGCATGACATGCAATTGTTGTTTGGCAATGAAGTTGGTTGATCATAAGTGCCAAGAGAGGGGCCTAGAAACAAATTGCCCCATCTGCTGTGATTTTTTGTTCACATCAAGTGAAAGTGTTAGAGCTCTTCCTTGTGGGCATTTCATGCATTCAGCTTGTTTTCAGGCTTACACTTGTAGCCACTACATATGTCCAATATGTAGCAAGTCCTTAGGAGATATGACGGTGTACTTTGGCATGCTCGACGCATTACTGGCATTGGAGGTACTCCCTGAAGAATACAGGGAACGCTGTCAGGATATATTGTGCAATGACTGCTCCATGAAGGGGAAAGCTCGCTTCCACTGGCTGTACCATAAATGTGGAAATTGTGGATCATATAATACCAAGGTGATTAAGGGCGCCCTTAAAATTGGCTCAGCAACGATACAGCGACAGTCATTTCAATTCCCTCAAACACGACCAAGGCAAGATAAGTGA 3759 41.5 MLTTFTPIHNSDGGGAVVAMAAAPVNSSMESCSRILALESPILIFVFFHKAIRAEIDRFHRDAMEFATNQQSGGDIAPLLQRYHFLRALYKHHCNAEDEVIFPALDQRVKNVASTYFLEHEGESVLFCQLLELLNSNALEEGSYKRELSSCVRALQISICQHMFKEEEQVFPLLVEKFSFEEQASLVWKFLCSIPIKMLEVFLPWLSSSISPDEHQIMCKCLSKIIPEQKLLQKVIFSWMEDARTTHANKKLYGDNLEFQCLGTQVCDLICRPEKGTDTSESTRTGKRKYVEQINFTYSTVSVACPINEICHWHNAIKKELNSIAEAARDLPLSSDFSELSALKERLQFIAEVCIFHCIAEDKVIFPAVDAELSFADQHAEEEIQFDKLRHLIESIQSDRAKYTSAEIHKKLSSHADQIIKTIQKHFHDEEMHVLPLARKHFGPQRQRELLYHSLCIMPLKWIERVLPWLVETLTEEEARSFLQNMQMAAPVSDHALVTLFSGWACKGHPRSICSSASAINYCPERILTEDEESCSFSPAREKPSCNQATECARPSKSGKAVCHGDLNGRSPLKNPSKKLHFTRVKQSACVPGLGVDDNNLGMRSLAAAKSLRSLCFGPYAPSLNSGLFSLENDPISCSSGSKSRPIDNIFKFHKAISKDLEYLDNESVNLGDCNDNFFRQFCGRFHLLWGLYKAHSNAEDDIVFPALESKEALHNVSHSYTLDHKQEEELFEGISAALSKLTNLRRDLNGKTKHNHSDWVKSHTSDIDDTARMNIELATKLQGMCKSIRVTLDQHIFREESELLPLFHLYFSLEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQEEQNKMMDTLKQATRNTMFSDWLNEWWEGSAASPHYMESVSHIPGDSDSHSICDQKDDSVFKPGWKEIFRMNENELESEIRKVARDSSIDPRRKDYLIQNLMTSRWIASQQMLPQTTTGENSDANKLIASAPSFRDPKKQIFGCEHYKRNCKLLATCCGKFFTCSFCHDKVSDHSMDRKASTEMMCMRCLKVQPIGSVCTTPSCGGFSMAKYYCSICKLFDDEREVYHCPFCNICRLGKGLGTDFFHCMTCNCCLAMKLVDHKCQERGLETNCPICCDFLFTSSESVRALPCGHFMHSACFQAYTCSHYICPICSKSLGDMTVYFGMLDALLALEVLPEEYRERCQDILCNDCSMKGKARFHWLYHKCGNCGSYNTKVIKGALKIGSATIQRQSFQFPQTRPRQDK 1252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3799035 3807121 - Lag0040315.1 Lac13g0519 591675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0519 1252 Gene3D nmb1532 protein domain like 310 453 - -
Lac13g0519 1252 Gene3D nmb1532 protein domain like 40 192 - -
Lac13g0519 1252 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 681 1225 - -
Lac13g0519 1252 SUPERFAMILY RING/U-box 1118 1165 - -
Lac13g0519 1252 CDD Hr-like 650 806 - -
Lac13g0519 1252 FunFam Zinc finger protein BRUTUS 641 871 - -
Lac13g0519 1252 ProSiteProfiles Zinc finger CHY-type profile. 983 1052 IPR008913 GO:0008270(InterPro)
Lac13g0519 1252 ProSiteProfiles Zinc finger CTCHY-type profile. 1055 1118 IPR017921 -
Lac13g0519 1252 SUPERFAMILY CHY zinc finger-like 983 1046 IPR037274 GO:0008270(InterPro)
Lac13g0519 1252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1114 1163 IPR013083 -
Lac13g0519 1252 Gene3D nmb1532 protein domain like 640 867 - -
Lac13g0519 1252 SMART ring_2 1119 1160 IPR001841 -
Lac13g0519 1252 Gene3D - 1190 1232 - -
Lac13g0519 1252 CDD Hr-like 313 436 - -
Lac13g0519 1252 Pfam CHY zinc finger 990 1058 IPR008913 GO:0008270(InterPro)
Lac13g0519 1252 Pfam Zinc-ribbon 1166 1223 IPR039512 -
Lac13g0519 1252 CDD RING-H2_Pirh2-like 1118 1161 - -
Lac13g0519 1252 CDD Hr-like 44 172 - -
Lac13g0519 1252 SUPERFAMILY Zinc hairpin stack 1056 1111 IPR037275 -
Lac13g0519 1252 ProSiteProfiles Zinc finger RING-type profile. 1119 1161 IPR001841 -
Lac13g0519 1252 Pfam Ring finger domain 1118 1160 IPR001841 -
Lac13g0519 1252 FunFam Zinc finger protein-related isoform 1 1114 1163 - -
Lac13g0519 1252 Pfam Hemerythrin HHE cation binding domain 646 807 IPR012312 -
Lac13g0519 1252 Pfam Hemerythrin HHE cation binding domain 45 174 IPR012312 -
Lac13g0519 1252 Pfam Hemerythrin HHE cation binding domain 312 438 IPR012312 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0519 Lac-Chr13:3799035 Lac3g0645 Lac-Chr3:5013219 1.30E-222 dispersed
Lac13g0519 Lac-Chr13:3799035 Lac3g0463 Lac-Chr3:3536475 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0519 K16276 - csv:101217252 2149.01