Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0520 ATGGCGGCGTCTGCTCTGCTGTTGCATTTAGCTCTTTGTCTCTGTTTACTCTATTCTACACGTCTTTATGCCTCTCCGAACCCAGATTTAGACGCTTTAATGGCGTTCAAAGCGGCGTCTGATAAAGGGAACAAGCTCACCGCATGGAACTTTACCTCTAACCCTTGTGCTTGGGATGGAGTCTCTTGTCTCAGAAACAGGGTCTCGAGGTTGGTTCTTGAAAATCTTGAGCTTACAGGCTCCATCGGACCTCTTACTGCTTTGACTCAGTTACGAGTGCTGAGCCTCAAGCGGAACCGTCTCTCCGGTCCCATTCCCGATCTCTCCAACTTCACAGCTCTCAAACTCGTGTTTCTCTCGTACAATCAATTTTCCGGCGACTTTCCGGCGTCTTTTCTGTCTCTCGTCCGGCTCTACCGTCTCGATCTCTCTCACAATAACTTGACCGGAGAGATTCCGGCTTCTGTTAACCGTTTGACTCATCTTCTCACTCTACGGCTCGAAGATAACCGGTTTTCTGGTTCCATCTTGGAACTGAACCTCCCGAATCTTCAGGACTTCAACATTTCAGCGAACCGTCTCTCCGGCGAAATCCCCAAATCGTTGTCGACGTTCCCTGGGTCGTCTTTTGGCCAGAACGTTGGTTTGTGTGGATCTCCTCTTCAGAGCTGCAAGAGCATTGTCAGTAACCCGACGGAACCCGGATCCGAAGGAGCTCTTGCCTCGCCCATAACACCGCCGCGAAACCTCACCGTTTCATCTTCTCCGACTTCGCTTCCCGGAGTTACAGCCGAAACAAAGCCGGAAAACACCCACCACAACAGCACCGGGAAGATAGGTTCTCTAGCGCTAATCGCCATAATTCTCGGCGACGTTTTGGTGCTAGCGGTGGTCTCGCTTCTTCTCTACTGCTATTTCTGGAGAAACTCTTCTGACAAAGCCCGAGACGGGAAGGGCTCGAAGCTTCTCGAAAGCGAGAAGATCGTTTACTCTTCTAGTCCATATCCGGCCCAGGCCGGAACAGAGAGAGGCCGGATGGTGTTCTTCGAGGGGGTCAAGAAGTTCGAGCTCGAAGATTTGCTTCGAGCCTCGGCGGAAATGCTCGGAAAAGGTGGGTTCGGAACTTCGTACAAGGCGATTCTCGACGACGGCAACGTGGTGGCGGTGAAACGGCTGAAAGACGCGCAGGTCGGAGGCAAACGAGAGTTCGAGCAGCATATGGAGGTGTTGGGAAGGTTGAGACATGCGAATATCGTAAGCTTGAGAGCTTACTACTTTGCGAGAGAGGAGAAGTTGTTGGTTTATGATTACATGCCCAATGGCAGCTTGTTCTGGCTTCTTCACGGGAACAGAGGCCCCGGACGGACGCCGTTGGACTGGACGACGAGGTTGAAGATCGCCGCCGGAGCGGCTAGAGGACTGGCCTTCATTCACAACTCCTGCAAGTCGCTCAGGCTCTCCCATGGCAATGTTAAATCCACTAACGTTCTTCTGGACCAATCGGGAAATGCTCGAGTCTCCGATTTCGGACTGGCCCTTTTCACTCCCCCGTCCACTCCTCGATCCAACGGCTACCGGGCGCCGGAGTGCGGCGAGGGCCGGAAACTGACGCAGAAATCCGACGTTTACTCATTTGGGGTTCTTCTCCTCGAGCTGCTCACCGGTAAGTGCCCCTCCGTGGTGGAGAATGGCGGGCCGGGAGGCGGTGGATACGGCGGCGTGTTGGATTTGCCCCGGTGGGTTCAGTCGGTGGTGAGAGAGGAGTGGACGGCGGAGGTTTTTGATTTGGAGCTGATGAGATACAAAGACATCGAAGAGGAAATGGTTGGGCTTCTGCAGATTGCCTTGGCTTGTACTTCGGCTTCGCCGGATCAACGGCCGAAGATGAGCCATGTGGTGAAGATGATCGACGAGCTTCGTGGAGTGGAGATGTCGCCGTTCCACGACGGCTCCGACTCGGTGACGGAGTCGCCGGCGGTGTCGGAGGGCACTTGCGGCGGAGGAGTCAGCCAGTAA 2016 54.32 MAASALLLHLALCLCLLYSTRLYASPNPDLDALMAFKAASDKGNKLTAWNFTSNPCAWDGVSCLRNRVSRLVLENLELTGSIGPLTALTQLRVLSLKRNRLSGPIPDLSNFTALKLVFLSYNQFSGDFPASFLSLVRLYRLDLSHNNLTGEIPASVNRLTHLLTLRLEDNRFSGSILELNLPNLQDFNISANRLSGEIPKSLSTFPGSSFGQNVGLCGSPLQSCKSIVSNPTEPGSEGALASPITPPRNLTVSSSPTSLPGVTAETKPENTHHNSTGKIGSLALIAIILGDVLVLAVVSLLLYCYFWRNSSDKARDGKGSKLLESEKIVYSSSPYPAQAGTERGRMVFFEGVKKFELEDLLRASAEMLGKGGFGTSYKAILDDGNVVAVKRLKDAQVGGKREFEQHMEVLGRLRHANIVSLRAYYFAREEKLLVYDYMPNGSLFWLLHGNRGPGRTPLDWTTRLKIAAGAARGLAFIHNSCKSLRLSHGNVKSTNVLLDQSGNARVSDFGLALFTPPSTPRSNGYRAPECGEGRKLTQKSDVYSFGVLLLELLTGKCPSVVENGGPGGGGYGGVLDLPRWVQSVVREEWTAEVFDLELMRYKDIEEEMVGLLQIALACTSASPDQRPKMSHVVKMIDELRGVEMSPFHDGSDSVTESPAVSEGTCGGGVSQ 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3812849 3815431 - Lag0040316.1 Lac13g0520 591676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0520 671 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 438 646 - -
Lac13g0520 671 Pfam Leucine rich repeat N-terminal domain 27 63 IPR013210 -
Lac13g0520 671 Gene3D Transferase(Phosphotransferase) domain 1 438 653 - -
Lac13g0520 671 MobiDBLite consensus disorder prediction 232 275 - -
Lac13g0520 671 FunFam pollen receptor-like kinase 1 333 437 - -
Lac13g0520 671 Pfam Leucine Rich Repeat 138 158 IPR001611 GO:0005515(InterPro)
Lac13g0520 671 Pfam Leucine Rich Repeat 183 204 IPR001611 GO:0005515(InterPro)
Lac13g0520 671 Pfam Protein tyrosine and serine/threonine kinase 366 635 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac13g0520 671 CDD STKc_IRAK 368 639 - -
Lac13g0520 671 SUPERFAMILY L domain-like 46 205 - -
Lac13g0520 671 MobiDBLite consensus disorder prediction 650 671 - -
Lac13g0520 671 Gene3D Ribonuclease Inhibitor 19 112 IPR032675 -
Lac13g0520 671 MobiDBLite consensus disorder prediction 246 275 - -
Lac13g0520 671 FunFam Nuclear pore complex protein NUP107 27 178 - -
Lac13g0520 671 PANTHER OS05G0588300 PROTEIN 9 645 IPR050994 -
Lac13g0520 671 Gene3D Ribonuclease Inhibitor 113 226 IPR032675 -
Lac13g0520 671 SUPERFAMILY Protein kinase-like (PK-like) 366 636 IPR011009 -
Lac13g0520 671 ProSiteProfiles Protein kinase domain profile. 362 648 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac13g0520 671 Gene3D Phosphorylase Kinase; domain 1 337 437 - -
Lac13g0520 671 MobiDBLite consensus disorder prediction 646 671 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2928 Lac-Chr10:43890450 Lac13g0520 Lac-Chr13:3812849 6.10E-110 dispersed
Lac13g0520 Lac-Chr13:3812849 Lac3g0862 Lac-Chr3:6916549 7.90E-102 dispersed
Lac2g1493 Lac-Chr2:12915958 Lac13g0520 Lac-Chr13:3812849 3.50E-50 dispersed
Lac13g0520 Lac-Chr13:3812849 Lac6g2971 Lac-Chr6:47280640 5.80E-105 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85851 PF07714 PK_Tyr_Ser-Thr 2.30E-33 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0520 - - - 0.0