Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0521 ATGGCTTCCAGAGAAGGGAGGCGTCGTCATCAGCATCATCATCACCACAATCTGGTGCCTCTTGCTGCTTTGATCAGTAAAGAGGTGAGGAACGAGAGATTGGAGAAACCGACTGTAAGATATGGAAATGCAGCGCAGTCTAAGAAGGGGGAGGATTATTTTCTCATGAAAACGGATTGTCAGCGAGTTCCTGGGAACCCTTCATCTACTTTCTCTGTTTTTGCTATATTTGACGGACACAATGGAAATGCTGCAGCAATTTTCACGAGGGAACATTTGTTGAGTCATGTCTTGGGTGCACTTCCCCGTGGCCTCGGGCAGGAGGAGTGGCTTCAAGCTCTACCACGAGCTTTGGTTGCTGGATTTGTGAAGACAGACAAGGAGTTTCAGAGCAGAGGTGAAACTTCGGGAACTACAGCTACGTTTGTAATCATCGATGGATGGACAGTGACAGTAGCATCTGTTGGAGATTCTCGATGTATTTTAGATACTCAGGGTGGTGCGGTCTCTGCTTTAACAGTTGATCATAGACTTGAAGAGAATGTTGAAGAGAGAGAACGTGTGACTGCAAGTGGTGGGGAAATCGGAAGATTGAGCATTGTTGGCGGTGCTGAGATTGGCCCGCTCCGTTGTTGGCCTGGAGGCTTATGCCTTTCTCGATCAATTGGAGACATGGATGTTGGAGAGTTTATAGTTCCAATTCCATTCGTGAAACAAGTAAAGTTATCAAATGCTGGTGGAAGGCTTATAATTGCGTCTGATGGCATCTGGGACGCCCTATCATCAGATATGGCTGCAAAGTCCTGCCGGGGACTACCGGCCGAGCTTGCTGCTAGGCAAGTTGTGAAGGAAGCCTTGAGAACAAGAGGCTTGAAAGATGATACAACCTGCATAGTCGTCGACATAATTCCTCCTGATAATTCAGCACAGTCTTCCCCTCCTCCGAAGAAACAGAGCGTACTGAAATCTCTATTATTCAGGAAAAAGTCTCACAGTTCTAATAAGCTATCAAAGAGGCTATCAGCTATCGGTCTCGTGGAAGAATTATTTGAAGACGGCTCCGCCATGCTGGCTGAAAGGCTTGGATCTGTAGAGTTGAGTGGATCTGGACATGGCACACCCAGCCTATTCACATGTGCTGTATGTCAAGTAGATCTTGCTCCCAGTGAGGGCATCTCTGTTCATGCTGGTTCCATCTTCTCCACCAGCTCAAAGCCATGGCAAGGCCCTTTCCTGTGTGCCGATTGTCGAAACAAGAAGGACGCAATGGAAGGAAAACGTCCCAGTGGAGTGAGAGTGGCGTAG 1305 47.74 MASREGRRRHQHHHHHNLVPLAALISKEVRNERLEKPTVRYGNAAQSKKGEDYFLMKTDCQRVPGNPSSTFSVFAIFDGHNGNAAAIFTREHLLSHVLGALPRGLGQEEWLQALPRALVAGFVKTDKEFQSRGETSGTTATFVIIDGWTVTVASVGDSRCILDTQGGAVSALTVDHRLEENVEERERVTASGGEIGRLSIVGGAEIGPLRCWPGGLCLSRSIGDMDVGEFIVPIPFVKQVKLSNAGGRLIIASDGIWDALSSDMAAKSCRGLPAELAARQVVKEALRTRGLKDDTTCIVVDIIPPDNSAQSSPPPKKQSVLKSLLFRKKSHSSNKLSKRLSAIGLVEELFEDGSAMLAERLGSVELSGSGHGTPSLFTCAVCQVDLAPSEGISVHAGSIFSTSSKPWQGPFLCADCRNKKDAMEGKRPSGVRVA 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3824224 3826943 - Lag0040317.1 Lac13g0521 591677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0521 434 ProSiteProfiles PPM-type phosphatase domain profile. 33 302 IPR001932 -
Lac13g0521 434 SUPERFAMILY PP2C-like 46 302 IPR036457 -
Lac13g0521 434 SMART PP2C_SIG_2 35 302 IPR001932 -
Lac13g0521 434 SMART PP2C_4 36 300 IPR001932 -
Lac13g0521 434 CDD PP2Cc 48 302 IPR001932 -
Lac13g0521 434 Gene3D - 40 309 IPR036457 -
Lac13g0521 434 PANTHER PROTEIN PHOSPHATASE 33 301 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Lac13g0521 434 Pfam Protein phosphatase 2C 66 287 IPR001932 -
Lac13g0521 434 FunFam probable protein phosphatase 2C 5 40 307 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0521 Lac-Chr13:3824224 Lac3g2933 Lac-Chr3:46773876 4.80E-169 dispersed
Lac13g0521 Lac-Chr13:3824224 Lac7g0812 Lac-Chr7:6494413 3.20E-11 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0521 - - - 0.0