Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0523 ATGGCGTTATTCTGTTTCATTTTGTTCTTTGTTCTCTCTCGTCTAGTAGTACGTCCTCTGGCTCAGAATGATAGCAGTTTCCTTCATCCAGATTGCCCTTCCTCCTTCGAATGTGGAAAACTTGGCTTCATAAGATTCCCTTTTAACAACGAATCGCTCACTGATTGCGGATTATACACAGTGAAAAATTGCGGGACACCACATCCAAAAATTCAGCTGAAACGTGGAGGATTATGGGTCGATGTTGTTGGCATATCTCAGGCTAATGTCATCAATATCAGTGACTCAGAACTTCAGAAGCAAATAGACTCTCGCAATTGTTCTGTTCTGCACGATCTGGCTCTTCAAAATTCTTCTTCATCGTCTTTATCCACACCCAATAATCTTACTTTGTATAATTGCACGCAGAACCCTAAAGATGCTCTTCCTCTTTTCATCAGTTCATTTAGCTGCCCTGATTATTATACATCCCCAAACTCTAGTTATTCGCTCGATGGTTCCACTTGCAATTCTAAAATTTTAGTTCCAGTTGTCCCGGTTGGTCCCAATAACCCAGTTAGTAAGTTTACTGCTGATTTCCAACTTCAAGTGACCGTATATGGTCCTTGTTATGAATGTTTTTTTTATAAAGGAGGCAAATGCTCAGATACCGAAGGAAACTTTGTTTGTAAAGGTCAAAACACAGAAAGAAGAAAAGATGAAAGTAAGAAGAATTTAAGGATAGCAGTAGCAGTAGGTGCTGGAGTCCCAGGTGTAATTCTGCTTATGTTATTATTTGCTCTTTGGTACCGCAGAAGAAGGCGTGCTTCACCAAATATCCTAACAAGGAATATATCTTGTGAACCCTACTCAAAATTCGACCTGGAAGACACTGGTGTGTGCTTTGAAGTTCCCGTTTTCTCATATGCCGAACTTGAAATGGCCACTAACAAATTTGATCGTGACAAAGAACTTGGAGATGGTGGTTTCGGAACCGTATACCATGGCAAACTCCAGGATGGCCGGGAAGTTGCTGTGAAACGCCTTTATCAACAAAACTATAGACGAGTGGAGCAATTCATGAATGAGGTTAAAATTCTCACCCGCCTTCGCCATAAAAATCTTGTCTCCCTTTATGGATGTACTTCAAGACGCAGCCGTGAACTTCTCCTTGTCTATGAATTTGTCGCGAATGGTACTGTTGCCGATCATCTCCATGGCGAACAAGCAAGTTCTAGCTTGCTCACATGGCCTATTCGGATGAGCATTGCCATAGAAACAGCAAGTGCTCTAGTTTATCTCCACGCTTCAGATATCATTCATCGTGATGTGAAGACTACCAACATTCTCTTAGACAATAATTTTTCTGTCAAAGTTGCTGATTTTGGAATCTCTAGACTATTTCCAAACGATGTTAGTCACGTCTCAACCGCTCCTCAAGGGACCCCTGGTTATGTCGATCCCGAGTATTACCAGTGTTATCAGCTTACTACCAAGAGCGATGTTTATAGTTTTGGTGTTGTCTTAATCGAGCTTATATCGTCAATGCCAGCTGTCGATATAACAAGGCATCGGCATGAGATTAATTTGTCTAACTTAGCTGTGAACAAAATTCTAAGACAGGAAATTGACGAGCTGATTGATCCATGCCTCGGGTATCAATCGGATGAAAACGTTCGACGGATGATATTGGGAGTGGCTTGGCTAGCCTTTCTCTGTCTGCAGCAAGACAAGGAAAGGAGACCTACAATGGAAGAAGCACTGGAAACTTTGAAGAGGATTGAGAATGGGGAAGAAAGTGAGAATTTGCAGGATAAAAGTGCAGTGTTGAAGAGCTTTAATCCAGCTCCTTCTCCAGAGCATGATGAGATTGAGTTGTTGAAGAATAAGAGGCAGCTGTTGTCCCCTACTTCAGTTGCTGATAAATGGCTCAGCTCAACTTCATTTGTCAGTGCTTCAACTTCAATATCATCTATTTCCTAA 1962 41.54 MALFCFILFFVLSRLVVRPLAQNDSSFLHPDCPSSFECGKLGFIRFPFNNESLTDCGLYTVKNCGTPHPKIQLKRGGLWVDVVGISQANVINISDSELQKQIDSRNCSVLHDLALQNSSSSSLSTPNNLTLYNCTQNPKDALPLFISSFSCPDYYTSPNSSYSLDGSTCNSKILVPVVPVGPNNPVSKFTADFQLQVTVYGPCYECFFYKGGKCSDTEGNFVCKGQNTERRKDESKKNLRIAVAVGAGVPGVILLMLLFALWYRRRRRASPNILTRNISCEPYSKFDLEDTGVCFEVPVFSYAELEMATNKFDRDKELGDGGFGTVYHGKLQDGREVAVKRLYQQNYRRVEQFMNEVKILTRLRHKNLVSLYGCTSRRSRELLLVYEFVANGTVADHLHGEQASSSLLTWPIRMSIAIETASALVYLHASDIIHRDVKTTNILLDNNFSVKVADFGISRLFPNDVSHVSTAPQGTPGYVDPEYYQCYQLTTKSDVYSFGVVLIELISSMPAVDITRHRHEINLSNLAVNKILRQEIDELIDPCLGYQSDENVRRMILGVAWLAFLCLQQDKERRPTMEEALETLKRIENGEESENLQDKSAVLKSFNPAPSPEHDEIELLKNKRQLLSPTSVADKWLSSTSFVSASTSISSIS 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3833473 3836149 - Lag0040319.1 Lac13g0523 591679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0523 653 Pfam Protein kinase domain 313 582 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac13g0523 653 Gene3D Phosphorylase Kinase; domain 1 287 388 - -
Lac13g0523 653 Gene3D Transferase(Phosphotransferase) domain 1 389 608 - -
Lac13g0523 653 FunFam WAK1-OsWAK receptor-like cytoplasmic kinase (OsWAK-RLCK) 285 388 - -
Lac13g0523 653 SUPERFAMILY Protein kinase-like (PK-like) 297 606 IPR011009 -
Lac13g0523 653 ProSitePatterns Protein kinases ATP-binding region signature. 318 340 IPR017441 GO:0005524(InterPro)
Lac13g0523 653 CDD TM_EGFR-like 244 268 - -
Lac13g0523 653 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 12 640 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
Lac13g0523 653 MobiDBLite consensus disorder prediction 588 614 - -
Lac13g0523 653 SMART serkin_6 312 587 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac13g0523 653 CDD STKc_IRAK 318 587 - -
Lac13g0523 653 ProSitePatterns Serine/Threonine protein kinases active-site signature. 432 444 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac13g0523 653 ProSiteProfiles Protein kinase domain profile. 312 587 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac13g0523 653 FunFam Wall-associated receptor kinase-like 20 389 597 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0523 Lac-Chr13:3833473 Lac8g3008 Lac-Chr8:46919788 7.60E-126 dispersed
Lac13g0523 Lac-Chr13:3833473 Lac3g0460 Lac-Chr3:3514863 2.00E-126 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85852 PF00069 Pkinase 7.30E-49 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0523 - - - 0.0