Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0530 ATGGAGAACTTTCCTTCCATCTTCTTGTTCTTTATTCTCCTCTGCAACTTTTGCCTTTCAATGGCGTCTTTGAACGATGAGGGCAATGCCCTTTTGTCCTTCAAACAGTCCATTTCTGAAGACCCAGAGGGCTCTCTCAGCAACTGGAATTCTTCAGATGAAACCCCTTGTGCTTGGAATGGAGTTACATGCAAGGATCTGAGAGTTGTTTCTCTTAGTATTCCCAAGAAGAAACTCAATGGCGTTCTTCCTTCTTCTCTGGGGTTTCTCTCTCAGCTTCGTCATGTGAATCTGAGGAGTAATAAGCTCCATGGGTGCTTGCCAATGGAGCTGTTTGAAGCTAATGGAATACAGAGTTTGGTGCTTTATGGGAATTCCTTTTCTGGGTCTGTCCCAAATGAGATTGGTAAGCTGAAAAACCTTCAAATCTTGGATTTGTCTCAGAATTTCTTTAATGGGTCGTTGCCTGTTTCGTTGATGCAATGCAGAAGATTGAGAATTCTTGATCTTAGTCAGAATAATCTTACCAATTCTCTGCCTGCTGGGTTTGGTTCCAGCTTGAATTTCTTGGAAAAATTGGATCTTTCTTTCAATAAGTTCAATGGTTCAATTCCTGTGGATATTGGTAATTTGTCTAGCTTGCAAGGCACTGTTGATTTGTCACATAATTTGTTTTCTGGTTCAATCCCTGCTAGCTTGGGAAACCTTCCTGAAAAGGTTTATATTGATCTTACTTATAACAATTTGAGTGGTTCTATACCCCAAAATGGTGCTCTTATGAACAGAGGACCAACTGCTTTTATTGGGAATCCTGGCCTTTGTGGACCGCCATTGAAGAATCCGTGTTCTTCTGAAACTCCGGGCGCAAGTTCGCCGTCGTCGTTCCCTTTCTTCCCAGACAATTATCCACCTGGGAGTTCTGAGGGTAATGGCAATAAGTATGACAAAGAAGGGCTGAGTAGGAGCACTTTGGTTGCGATAATCATCAGCGACATTATCGGCATTTGCCTGATCGGGTTGCTGTTTTCGTATTGCTATTCGAGGTTTTGCACTCAAAGAAATGGGAAGAAAGGAGACCACTCTAGTTATGGTTTTGAGAAGGGTGAGAAAGGAAGAAAGGATTGTCTCTGCTTTCAAAAGGGTGAATCCGAAAATGTTTCGGAGCACGTCGAGCAGTTTGATTTGGTACCTCTGGATTCACGAGTGACGTTTGATCTCGACGAACTCCTCAAGGCATCAGCATTTGTTTTGGGAAAAAGCGGTATTGGGATAGTGTATAAAGTTGTGCTTGAAGATGGACTCACTTTAGCTGTGAGAAGATTGGGAGAAGGAGGTTCTCAAAGATTCAAAGAGTTTCAAACTGAAGTTGAAGCAATTGGGAAGCTGAGGCACCCAAATGTTGTTAGCCTTAGAGCATATTATTGGTCTGTTGATGAGAAATTGCTCATTTATGATTACATTCCAAATGGGAACCTTGCATTTGCCATTCATGGGAAGCCTGGAACGGCAGCGTTTACACCTTTACCGTGGTCTGCTCGGTTAAGAATCATGGAAGGTATTGCGAAAGGGTTGGTTTACTTACATGAGTTTAGCCCCAAAAAGTATGTCCATGGAAATTTGAAGACAAACAACATACTTCTTGGACACAACATGGTACCACATATATCTAATTTCGGGCTCGCCCGCCTTGTTAACATTGCGGGAGGATCTCCAACCGTGCAATCGAGTCATATGGCGGAGGAAAAACCACAAGAGAAACAACTAAAGTCTGCAACCTCTGAAGCTAGCACATTCAGTTCTAGTATGAGTTCTTACTACCAAGCCCCGGAAGCATTCAAAGTCGTGAAGCCATCGCAGAAATGGGACGTTTACTCGTTCGGTGTGATATTACTCGAACTGATCACCGGAAGGTTGCCAATAGTTCAGGTGGGAGCCTCGGAAATGGATCTTGTTCAATGGATTCAACTCTGCATTGAGGAAAAGAAGCCGCTTTCAGACGTGATAGACCCGTCTTTGACTCCGGACGACGATGCAGACGAGGAGATTATCGCGGTTTTGAAGATTGCTTTAGCTTGTGTTCAAAATAGTCCTGAAAGAAGACCGGCAATGAGACATGTTTCTGATGCTTTGAGCAGAATGGTTGTCACTCCAAACTGA 2157 43.25 MENFPSIFLFFILLCNFCLSMASLNDEGNALLSFKQSISEDPEGSLSNWNSSDETPCAWNGVTCKDLRVVSLSIPKKKLNGVLPSSLGFLSQLRHVNLRSNKLHGCLPMELFEANGIQSLVLYGNSFSGSVPNEIGKLKNLQILDLSQNFFNGSLPVSLMQCRRLRILDLSQNNLTNSLPAGFGSSLNFLEKLDLSFNKFNGSIPVDIGNLSSLQGTVDLSHNLFSGSIPASLGNLPEKVYIDLTYNNLSGSIPQNGALMNRGPTAFIGNPGLCGPPLKNPCSSETPGASSPSSFPFFPDNYPPGSSEGNGNKYDKEGLSRSTLVAIIISDIIGICLIGLLFSYCYSRFCTQRNGKKGDHSSYGFEKGEKGRKDCLCFQKGESENVSEHVEQFDLVPLDSRVTFDLDELLKASAFVLGKSGIGIVYKVVLEDGLTLAVRRLGEGGSQRFKEFQTEVEAIGKLRHPNVVSLRAYYWSVDEKLLIYDYIPNGNLAFAIHGKPGTAAFTPLPWSARLRIMEGIAKGLVYLHEFSPKKYVHGNLKTNNILLGHNMVPHISNFGLARLVNIAGGSPTVQSSHMAEEKPQEKQLKSATSEASTFSSSMSSYYQAPEAFKVVKPSQKWDVYSFGVILLELITGRLPIVQVGASEMDLVQWIQLCIEEKKPLSDVIDPSLTPDDDADEEIIAVLKIALACVQNSPERRPAMRHVSDALSRMVVTPN 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3875933 3878182 + Lag0040326.1 Lac13g0530 591686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0530 718 SUPERFAMILY Protein kinase-like (PK-like) 416 710 IPR011009 -
Lac13g0530 718 SUPERFAMILY L domain-like 25 279 - -
Lac13g0530 718 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 24 184 - -
Lac13g0530 718 MobiDBLite consensus disorder prediction 279 314 - -
Lac13g0530 718 Gene3D Ribonuclease Inhibitor 183 268 IPR032675 -
Lac13g0530 718 Gene3D Ribonuclease Inhibitor 24 182 IPR032675 -
Lac13g0530 718 SMART LRR_typ_2 138 162 IPR003591 -
Lac13g0530 718 SMART LRR_typ_2 187 211 IPR003591 -
Lac13g0530 718 SMART LRR_typ_2 163 185 IPR003591 -
Lac13g0530 718 SMART LRR_typ_2 90 114 IPR003591 -
Lac13g0530 718 Pfam Leucine rich repeat N-terminal domain 24 64 IPR013210 -
Lac13g0530 718 MobiDBLite consensus disorder prediction 572 593 - -
Lac13g0530 718 ProSiteProfiles Protein kinase domain profile. 411 714 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac13g0530 718 PANTHER OS05G0588300 PROTEIN 162 713 IPR050994 -
Lac13g0530 718 FunFam Leucine-rich repeat receptor-like protein kinase 394 486 - -
Lac13g0530 718 Pfam Leucine Rich Repeat 117 138 IPR001611 GO:0005515(InterPro)
Lac13g0530 718 Pfam Leucine Rich Repeat 218 236 IPR001611 GO:0005515(InterPro)
Lac13g0530 718 Pfam Leucine Rich Repeat 164 185 IPR001611 GO:0005515(InterPro)
Lac13g0530 718 Pfam Leucine Rich Repeat 190 211 IPR001611 GO:0005515(InterPro)
Lac13g0530 718 Pfam Leucine Rich Repeat 140 162 IPR001611 GO:0005515(InterPro)
Lac13g0530 718 Gene3D Phosphorylase Kinase; domain 1 379 486 - -
Lac13g0530 718 FunFam Leucine-rich repeat protein kinase family protein 487 716 - -
Lac13g0530 718 CDD STKc_IRAK 417 713 - -
Lac13g0530 718 Gene3D Transferase(Phosphotransferase) domain 1 487 716 - -
Lac13g0530 718 Pfam Protein tyrosine and serine/threonine kinase 417 709 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac13g0530 718 FunFam Leucine-rich repeat receptor-like protein kinase 189 284 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0064 Lac-Chr13:467647 Lac13g0530 Lac-Chr13:3875933 5.40E-109 dispersed
Lac13g0530 Lac-Chr13:3875933 Lac9g1306 Lac-Chr9:30224507 3.20E-77 dispersed
Lac1g1157 Lac-Chr1:29962108 Lac13g0530 Lac-Chr13:3875933 1.00E-74 transposed
Lac8g3004 Lac-Chr8:46880294 Lac13g0530 Lac-Chr13:3875933 3.10E-135 transposed
Lac13g0530 Lac-Chr13:3875933 Lac5g2452 Lac-Chr5:43123432 8.30E-41 wgd
Lac13g0530 Lac-Chr13:3875933 Lac8g1491 Lac-Chr8:32253089 1.50E-212 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85853 PF00069 Pkinase 1.70E-27 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0530 - - - 0.0