Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0532 ATGGCTTCTGGCGGCGGCGGCGGCGAGGTTGAAGTCAAGGGAGTGTTCATAGGAGCAAGCTGTAACAGAATAGTGAACAACGTTTCTTGGGGAGCCTGTGATTTGGTAGCTTTTGGCGCTCAAAACGCCGTCGCTATTTTCTCTCCCAAGTCTGCACAAATTTTGACCACGCTTCCCGGTCACAACGCCTCTGTGAACTGCACTCATTGGCTTCCAAGTAACAAGTTTGCGTTTAGAGCCAAGCATTTGAACTGTCATTATCTGCTTTCTGGTGACTCTGATGGTGCTATTCATTTATGGGAATTGTCGCTTCTGGACCAGAAGTGGAGAAATGTTTTACAACTACCAAAATCACACAAGAAAGGCATCACGTGTATTACTGCCCATGTAATTTCTGAAACGGTGGCAATTGTTGCATCTGCTTCTTCAGATGGTTCAGTTTGTGTTTGGGAGGTAGCATTTCCGTCTACCAATGAAGGTGATTGTACAGTGTTGTTGCTGGACTCTCTCATGGTTGGTTCAAAATCTATGGTGGCACTTTCATTAGCAGAATTGCCTGGAAATGCCAGTCATATGGTCCTGGCAATGGGAGGCTTGGATAATAAGATTCATCTATATTGTGGGAAGAGAACTGGAGAGTTTGTTAAGGCATGTGAACTCAAAGGACATACGGATTGGATTAGAAGTCTGGATTTCTCTTTGCCTATGGGGAAAAATGGAGAAGCAGATAGCATTATGCTTGTAAGTTCATCTCAGGACAGAGGCATACGCATATGGAAGATGGCTCTTCATGGTTCTTTAGCCAACATGAATGGAGGATGCGAAAAAGAGGAAATAAGTTTAACATCTTATATACAAGGTCCCATATTTACTGCCGGATCATCAACTTACCAGGTATCATTAGAATCTCTTTTGATTGGACATGAGGATTGGGTATACTCGGTCCAATGGCAACCTCCTTCAGCTGCAGAAACAGAAGGGATTTCCGGCTATCAATCTGAAAGCATCTTATCTGCATCTATGGACAAGACCATGATGATTTGGAAACCTGAAAAGACTTCTGGGATCTGGATGAATGTGGTTACCGTTGGAGAGTTAAGTCATTGTGCTTTAGGATTTTATGGTGGGCATTGGAGCCCTAATGGAGATTCAATTTTAGCACATGGTTATGGTGGGTCTTTTCATCTCTGGAGAAATGTTGGTATCAGTTCAGATAGCTGGAAACCTCAAAAGGTTCCCTCTGGACATTTTGCTGCTGTAATGGATATCTCATGGGCCAGATCTGGTGATTATATTATTTCAGTCAGCCATGACCAGACAACTCGAATTTTTGCTCCCTGGAAAAATGTCAATTCTCTTGAAGGAGGTTCTTGGCATGAAATAGCTCGACCTCAAGTCCATGGACATGATATTAATTGTGTCACCATAATACAAGGAAAAGGGAACCATCGCTTTGTCAGCGGAGCTGAAGAGAAAGTTGCTAGAGTCTTTGAAGCTCCATTATCTTTTCTGAAAACATTGAGTCATGCAACGCTACAGAATTTTGTGGCCACAGAAGATCATCTTGTGGATGTTCAGATTTTGGGTGCAAATATGTCGGCTCTTGGGCTTTCACAGAAACCTATTTATGTTCATTCTGCTGATAAGACTCCAGACAGGAGTGGAAATGAAGGTCTTGACACCCTTGAAACCATTCCTAATGCAGTTCCTGTCGTTCTAACTGAACCTCCCATTGAAGATCAACTGGCATGGCATACACTTTGGCCAGAGTCGCACAAACTGTATGGTCATGGGAATGAGCTGTTTTCTCTATGTTGTGATCACAAGGGAAAACTTGTTGCTTCATCCTGTAAGGCACAGACAGCATCAGTAGCAGAAATATGGCTCTGGGAAGTTGGTTCATGGAAGGCAGTTGGTCGTTTGCCATCTCACAGCCTAACAATAACACAAATGGAGTTTTCGTATGATGACAATATGTTATTGGCAGTCTCAAGAGATCGTCAGTTTTCGGTTTTTAAAATCCATAGAACAGGCTCTGATGAAATCCACCATGAGCTTATATCAAGGCAGGAGGCACACAGAAGAATCATATGGTCATGTTCTTGGAACCCATATGGTCATGAGTTTGCAACAGGCTCTAGGGATAAAACTGTGAAGATATGGACTGTGGCATCTGATTCTTCAGTTAAGCAGCTAGCAACTTTGTCACAATTCAAATCTAGTGTCACTGCTTTATCATGGGTCGGTCTCGATCCCGAGAGCAATGGACTCCTTGCAGTTGGAATGGAAAGTGGTCTCCTTGAGTTGTGGAGTTTATCGATCAAAAGAATCGATAATGCTAACTCAAATGTAGCTGCTTCGGTCGTTCTACGTCTTGATCCATTTGTGTGCCATGTTTCCTCAGTCAACCGATTGTCATGGAGGGAACCAGAGAAGAGTGAAGAGTGCAGGAAGCTGCAGCTTGCTTCCTGTGGGGCTGATCACTGTGTTAGAGTGTTTGAGGTGAATGTTTCTTTATGA 2520 43.29 MASGGGGGEVEVKGVFIGASCNRIVNNVSWGACDLVAFGAQNAVAIFSPKSAQILTTLPGHNASVNCTHWLPSNKFAFRAKHLNCHYLLSGDSDGAIHLWELSLLDQKWRNVLQLPKSHKKGITCITAHVISETVAIVASASSDGSVCVWEVAFPSTNEGDCTVLLLDSLMVGSKSMVALSLAELPGNASHMVLAMGGLDNKIHLYCGKRTGEFVKACELKGHTDWIRSLDFSLPMGKNGEADSIMLVSSSQDRGIRIWKMALHGSLANMNGGCEKEEISLTSYIQGPIFTAGSSTYQVSLESLLIGHEDWVYSVQWQPPSAAETEGISGYQSESILSASMDKTMMIWKPEKTSGIWMNVVTVGELSHCALGFYGGHWSPNGDSILAHGYGGSFHLWRNVGISSDSWKPQKVPSGHFAAVMDISWARSGDYIISVSHDQTTRIFAPWKNVNSLEGGSWHEIARPQVHGHDINCVTIIQGKGNHRFVSGAEEKVARVFEAPLSFLKTLSHATLQNFVATEDHLVDVQILGANMSALGLSQKPIYVHSADKTPDRSGNEGLDTLETIPNAVPVVLTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDHKGKLVASSCKAQTASVAEIWLWEVGSWKAVGRLPSHSLTITQMEFSYDDNMLLAVSRDRQFSVFKIHRTGSDEIHHELISRQEAHRRIIWSCSWNPYGHEFATGSRDKTVKIWTVASDSSVKQLATLSQFKSSVTALSWVGLDPESNGLLAVGMESGLLELWSLSIKRIDNANSNVAASVVLRLDPFVCHVSSVNRLSWREPEKSEECRKLQLASCGADHCVRVFEVNVSL 839
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3887189 3894070 + Lag0040328.1 Lac13g0532 591688

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0532 839 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 690 725 - -
Lac13g0532 839 SMART WD40_4 728 771 IPR001680 GO:0005515(InterPro)
Lac13g0532 839 SMART WD40_4 298 349 IPR001680 GO:0005515(InterPro)
Lac13g0532 839 SMART WD40_4 457 498 IPR001680 GO:0005515(InterPro)
Lac13g0532 839 SMART WD40_4 587 631 IPR001680 GO:0005515(InterPro)
Lac13g0532 839 SMART WD40_4 51 101 IPR001680 GO:0005515(InterPro)
Lac13g0532 839 SMART WD40_4 359 398 IPR001680 GO:0005515(InterPro)
Lac13g0532 839 SMART WD40_4 213 260 IPR001680 GO:0005515(InterPro)
Lac13g0532 839 SMART WD40_4 634 673 IPR001680 GO:0005515(InterPro)
Lac13g0532 839 SMART WD40_4 683 722 IPR001680 GO:0005515(InterPro)
Lac13g0532 839 SMART WD40_4 785 834 IPR001680 GO:0005515(InterPro)
Lac13g0532 839 SMART WD40_4 108 151 IPR001680 GO:0005515(InterPro)
Lac13g0532 839 SMART WD40_4 406 445 IPR001680 GO:0005515(InterPro)
Lac13g0532 839 SUPERFAMILY WD40 repeat-like 193 730 IPR036322 GO:0005515(InterPro)
Lac13g0532 839 ProSiteProfiles Trp-Asp (WD) repeats profile. 220 261 IPR001680 GO:0005515(InterPro)
Lac13g0532 839 ProSiteProfiles Trp-Asp (WD) repeats profile. 690 731 IPR001680 GO:0005515(InterPro)
Lac13g0532 839 Gene3D - 578 683 IPR015943 GO:0005515(InterPro)
Lac13g0532 839 SUPERFAMILY WD40 repeat-like 28 397 IPR036322 GO:0005515(InterPro)
Lac13g0532 839 Gene3D - 401 550 IPR015943 GO:0005515(InterPro)
Lac13g0532 839 Gene3D - 288 400 IPR015943 GO:0005515(InterPro)
Lac13g0532 839 PRINTS G protein beta WD-40 repeat signature 709 723 IPR020472 -
Lac13g0532 839 PRINTS G protein beta WD-40 repeat signature 138 152 IPR020472 -
Lac13g0532 839 PRINTS G protein beta WD-40 repeat signature 247 261 IPR020472 -
Lac13g0532 839 Gene3D - 5 175 IPR015943 GO:0005515(InterPro)
Lac13g0532 839 FunFam Elongator acetyltransferase complex subunit 2 368 680 - -
Lac13g0532 839 Gene3D - 685 838 IPR015943 GO:0005515(InterPro)
Lac13g0532 839 Pfam WD domain, G-beta repeat 305 348 IPR001680 GO:0005515(InterPro)
Lac13g0532 839 Pfam WD domain, G-beta repeat 687 721 IPR001680 GO:0005515(InterPro)
Lac13g0532 839 Pfam WD domain, G-beta repeat 117 150 IPR001680 GO:0005515(InterPro)
Lac13g0532 839 Pfam WD domain, G-beta repeat 636 672 IPR001680 GO:0005515(InterPro)
Lac13g0532 839 Pfam WD domain, G-beta repeat 219 259 IPR001680 GO:0005515(InterPro)
Lac13g0532 839 Pfam WD domain, G-beta repeat 54 100 IPR001680 GO:0005515(InterPro)
Lac13g0532 839 Pfam WD domain, G-beta repeat 407 444 IPR001680 GO:0005515(InterPro)
Lac13g0532 839 Gene3D - 176 287 IPR015943 GO:0005515(InterPro)
Lac13g0532 839 PANTHER ELONGATOR COMPLEX PROTEIN 2 16 837 IPR037289 GO:0002098(InterPro)|GO:0033588(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0532 K11374 - - csv:101209018 1567.36
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g358 . . . . . . Bma14g01910 . . Cmo18g01004 . Cma18g00995 . Car18g00918 Sed06g1949 Cpe09g00322 Cpe01g01327 Bhi07g01286 Tan04g0812 Cmetu10g0150 Lac13g0532 Hepe01g1164 . . Cla05g02273 Cam05g2443 Cec05g2464 Cco05g2508 Clacu05g2438 Cmu05g2301 Cre05g2419 . . Cone6ag0423 Cone9ag0445 Lsi04g00222 Csa05g02643 Chy10g01176 Cme10g00228 . . Bda07g01725 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011732 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 30