Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0540 ATGCCATCTCCTGTTCCTCTCCAATTCCCCAAAACCCTAAAACCCTCCCATTCTCCTCTTCATCTCGCAATGAAAGACCGCTCTCCTTCCTCCAATGGCGCCGTCTACGTCCCTCCTCACCTCCGCCTCCGCTCCGTCGTCACTTCTCCCAATCATTCCTCTGCTCTTCCCGCTCTCGACTGCAAGCTTCGGGAGGCTCCGGCCTCGCTGCTCGATTCGGCCGCCGCTGCTCCGCCTTGCCTGCATGCTCGATCTCAAGAACTGCTCCACTCCGAGAATTCGCCGTTTAATTCTCTGCAGTTTGATTCCGCCTTCCACGATGGGCCTCCGGTGGAGAGTTGGGATTGTAATTTCGAGTTTTCGCATCAATCGGGTGTTTCACCTTCCGTCAACATTGATTTGTGGAAAAGGAAGTTAGCATTACTTTTACATGATAAGGACAAGCAAGAGTTAGTTTCAAGGGAGAAAAAAGATAGACATGATTTTGAGCAAATAGCTGCTTTGGCAAGTAGAATGGGACTTTTTAGCCATCTATATGCCAAAGTTGCTGTCTTTAGTAAGGTCCCATTGCCGAACTACAGATTTGATTTGGATGATCGGCGTCCACAGAGGGAGGTCTCTTTGCCTCCTGGGTTGCATAGAAGAGTTGATGACCATCTGGGAGAGTTTCTCTCTCAAAAGTCTAGGTTTAAAGGTTTTCAAGATGTCTCTGTCTCTAGATCAAGTAGCAGTGGTAGCATTGCTACAGATGAAGGGCTTTTTGAGCAACCTGAGCTACAAGCATCTAGTAAGGCTGTGATGGAAAAAATTCTTTGGCGGAGAAGTTCACATCTGTGTGATCAACAGCATGCTTGGCAGTCATCCCCTGAAGGAAGAGAAATGCTGGAATTTCGGAAAAATCTCCCTGCTTACAAGGAGAAGGATACAATATTGACCACAATCTCACAGAATCAGGTTATTATTATATCAGGTGAAACTGGTTGTGGCAAGACTACGCAAGTTCCCCAATTCATTTTGGAATCAGAAATAGAATCACTACGTGGAGCTGGTTGCAGCATCATATGTACACAGCCCAGACGAATATCTGCTATGTCTGTTTCTGAGAGAGTTGCTTCTGAGAGAGGGGAGAAATTGGGTGAATCTGTTGGTTATAAAGTGCGGCTGGAGGGTATGAAAGGGAGGGAGACTCATCTTCTCTTTTGCACCACGGGCATCTTGTTGAGAAGATTGCTGGTTGATCGAAATTTAAAAGGCATAACTCATGTTATTGTTGACGAAATTCATGAACGTGGAATGAATGAAGATTTTCTGCTTATTGTCCTGAAAGATCTCCTTCCTCGGCGACCAGAATTGAGGTTGATTCTAATGAGTGCAACTTTAGATGCAGAACTTTTCTCATCCTACTTTGGTGGGGCTCAAATAATTCACATTCCGGGATTCACACACCCTGTCCGAACTCATTTTCTGGAGGATATTCTAGAAATGACGGGTTACAGATTAACTCCATACAATCAAATAGATGATTATGGCCAAGAGAAGACTTGGAAAATGAGCAAACAAGCTCCAAGAAAGAGGAAAACCCAGATTGCCTCCTCTGTTCAGGATGCACTTATGGCAGCCGATTTTAAGGAGTACAGCCTTCAAACTCAGGAATCTTTATCGTGTTGGAATCCAGATTGTCTTGGTTTTAATCTCATTGAATATCTTCTAGTCAGCATATGTGAGAGTGAAGTGCCTGGAGCTATTCTTGTTTTTATGACTGGATGGGATGACATCAGTTCTCTGAAGGAGAAACTTCAGTCTCACCCGTTATTGGGAGATCCAAGTCGTGTTATGTTGTTGACGTGTCATGGTTCAATGGCCAGTTCAGAGCAGAGGTTAATATTTATTGAACCCGACAAAGGAGTGAGGAAGATAGTGCTTGCAACAAATATTGCTGAGACAAGTATCACGATAAATGATGTTGTGTATGTTCTGGACTGTGGAAAGGCAAAAGAAACATCGTATGATGCTTTAAATAACACTCCTTGTTTGCTTCCCTCATGGATATCCAAGGTTTCTGCTCAACAAAGAAGAGGAAGGGCTGGCCGTGTTCAACCAGGAGAATGCTATCATCTATACCCTCGTTGTGTGTTTGATGCTTTTGCTGAGTATCAGCTTGCAGAAATTTTGAGAACACCTTTACAGTCCCTCTGCCTGCAAATAAAAAGCTTAAAGCTTGGAAGTATATCAGAGTTTCTATCTAGGGCTTTGCAGTCACCAGAGCTACTAGCAGTTCAGAATGCTATTGAATATTTGAAGATCATTGGGGCATTTGATGAGAGGGAAAATCTTACTGTTTTAGGTCGTTATTTGACTATGCTCCCAATGGAGCCAAAACTGGGAAAGATGTTGATATTAGGTGCTATCTTCAATTGTTTGGATCCAATTTTGACCATTGTTGCTGGCCTCAGTGTGAGAGACCCTTTTCTAACGCCATTGGAGAAGAAGGATGCTGCTGAGGCTGCAAAGTCTCAATTTTCACAAGATCATAGTGATCACCTTGCTATTAACCGGGCTTATGGGGGATGGAAAGAAGCTGAGAGGAACTTTGGTGGATATGACTTCTGTTGGAAGAACTTCCTTTCCGTACAATCGATGAAGGCTATTGATTCACTAAGGAAGGAGTTTTTCTCTTTGCTTAGAGATACTGGCTTGGTTGATGGGTACTCGGAGTCCTACAACGCTTGGAGTCTTGATGAACAACTCATACGTGCAGTTATTTGTTATGGCCTCTATCCTGGAGTTTGCTCTGTTGTGCATAACGAGAAGTCATTTTCCCTCAAAACTATGGAGGATGGTCAGGTGCTTCTCTATTCGAACTCTGTTAATGCCCGAGAGTCAAAGATTCCATATCCATGGCTAGTTTTCAATGAGAAGATAAAAGTGAACTCCATTTTCCTTCGTGATTCAACAGCTATCTCTGACTCAATGCTGCTTCTCTTTGGTGGAAGCATCTCAAAAGGTGATAATGATGGACACTTGAAAATGTTGAGCGGTTTTTTGGAATTTTTCATGAAACCTGATCTAGCAGAGACATATCAGAAATTAAGAATGGAACTTGAAGAGCTTATACAGAAGAAACTACTAAATCCAAAGATGGATTTCCACTCCCACCACGATCTCCTATCTGCTGTACGTTTGCTTATTTCAGAAGATCAGTGTGAAGGTCGATTTGTTTTTGGCCGCCAGATCCTTCAGCAACCCTCCAAGGCATCCACTCCGGCAGCTGCACCAACTTCTATTGTCTCAAGAACTGAAAGTGGACCTGGTGGTGATAATTCTAAGAGTCAGCTCCAGACTTTACTCACGAGGGCTGGATATGCTGCACCCACCTATAAGACCAAGCAATTGAAGAATAATCAATTCCGAGCAACCGTGGAATTTAATGGACTGCAAATTATGGGGCAACCCTGTACCAACAAAAAAAACGCAGAAAAGGATGCAGCAGCTGAGGCTCTTGAGTGGTTGATGGGTGGAACTCAGACAGGGCACGACTATGTCAACCAAATGTCTATGATGCTAAAAAGGAGCAAGAAGGATCATAACTAA 3591 43.55 MPSPVPLQFPKTLKPSHSPLHLAMKDRSPSSNGAVYVPPHLRLRSVVTSPNHSSALPALDCKLREAPASLLDSAAAAPPCLHARSQELLHSENSPFNSLQFDSAFHDGPPVESWDCNFEFSHQSGVSPSVNIDLWKRKLALLLHDKDKQELVSREKKDRHDFEQIAALASRMGLFSHLYAKVAVFSKVPLPNYRFDLDDRRPQREVSLPPGLHRRVDDHLGEFLSQKSRFKGFQDVSVSRSSSSGSIATDEGLFEQPELQASSKAVMEKILWRRSSHLCDQQHAWQSSPEGREMLEFRKNLPAYKEKDTILTTISQNQVIIISGETGCGKTTQVPQFILESEIESLRGAGCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRETHLLFCTTGILLRRLLVDRNLKGITHVIVDEIHERGMNEDFLLIVLKDLLPRRPELRLILMSATLDAELFSSYFGGAQIIHIPGFTHPVRTHFLEDILEMTGYRLTPYNQIDDYGQEKTWKMSKQAPRKRKTQIASSVQDALMAADFKEYSLQTQESLSCWNPDCLGFNLIEYLLVSICESEVPGAILVFMTGWDDISSLKEKLQSHPLLGDPSRVMLLTCHGSMASSEQRLIFIEPDKGVRKIVLATNIAETSITINDVVYVLDCGKAKETSYDALNNTPCLLPSWISKVSAQQRRGRAGRVQPGECYHLYPRCVFDAFAEYQLAEILRTPLQSLCLQIKSLKLGSISEFLSRALQSPELLAVQNAIEYLKIIGAFDERENLTVLGRYLTMLPMEPKLGKMLILGAIFNCLDPILTIVAGLSVRDPFLTPLEKKDAAEAAKSQFSQDHSDHLAINRAYGGWKEAERNFGGYDFCWKNFLSVQSMKAIDSLRKEFFSLLRDTGLVDGYSESYNAWSLDEQLIRAVICYGLYPGVCSVVHNEKSFSLKTMEDGQVLLYSNSVNARESKIPYPWLVFNEKIKVNSIFLRDSTAISDSMLLLFGGSISKGDNDGHLKMLSGFLEFFMKPDLAETYQKLRMELEELIQKKLLNPKMDFHSHHDLLSAVRLLISEDQCEGRFVFGRQILQQPSKASTPAAAPTSIVSRTESGPGGDNSKSQLQTLLTRAGYAAPTYKTKQLKNNQFRATVEFNGLQIMGQPCTNKKNAEKDAAAEALEWLMGGTQTGHDYVNQMSMMLKRSKKDHN 1196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3963364 3977057 + Lag0040336.1 Lac13g0540 591696

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0540 1196 FunFam Putative ATP-dependent RNA helicase DHX36 741 845 - -
Lac13g0540 1196 Pfam DEAD/DEAH box helicase 310 462 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Lac13g0540 1196 Pfam Helicase associated domain (HA2), winged-helix 762 789 IPR048333 -
Lac13g0540 1196 SMART helicmild6 593 699 IPR001650 -
Lac13g0540 1196 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1107 1172 IPR014720 -
Lac13g0540 1196 Gene3D - 741 849 - -
Lac13g0540 1196 FunFam DExH-box ATP-dependent RNA helicase DExH3 561 717 - -
Lac13g0540 1196 SUPERFAMILY dsRNA-binding domain-like 1103 1182 - -
Lac13g0540 1196 CDD DEXHc_RHA-like 317 477 - -
Lac13g0540 1196 Gene3D - 564 718 IPR027417 -
Lac13g0540 1196 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 311 478 IPR014001 -
Lac13g0540 1196 FunFam DExH-box ATP-dependent RNA helicase DExH3 254 479 - -
Lac13g0540 1196 Pfam Helicase conserved C-terminal domain 570 698 IPR001650 -
Lac13g0540 1196 SMART ha2_5 761 851 IPR007502 -
Lac13g0540 1196 SMART DRBM_3 1108 1171 IPR014720 -
Lac13g0540 1196 MobiDBLite consensus disorder prediction 1 35 - -
Lac13g0540 1196 FunFam DExH-box ATP-dependent RNA helicase DExH3 1086 1175 - -
Lac13g0540 1196 CDD SF2_C_RHA 482 707 - -
Lac13g0540 1196 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 565 739 IPR001650 -
Lac13g0540 1196 Gene3D - 255 479 IPR027417 -
Lac13g0540 1196 PANTHER ATP-DEPENDENT RNA HELICASE 254 1094 - GO:0003723(PANTHER)|GO:0004386(PANTHER)|GO:0005622(PANTHER)|GO:0005634(PANTHER)
Lac13g0540 1196 SMART ultradead3 299 492 IPR014001 -
Lac13g0540 1196 Gene3D - 1090 1174 - -
Lac13g0540 1196 Pfam Helicase associated domain (HA2), ratchet-like 791 849 - -
Lac13g0540 1196 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 917 999 IPR011709 -
Lac13g0540 1196 Pfam Double-stranded RNA binding motif 1109 1170 IPR014720 -
Lac13g0540 1196 Coils Coil 1020 1040 - -
Lac13g0540 1196 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 305 864 IPR027417 -
Lac13g0540 1196 MobiDBLite consensus disorder prediction 1083 1110 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0540 K14442 - - csv:101208774 2081.6
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0540 Lac-Chr13:3963364 Lac13g0570 Lac-Chr13:4215356 0.00E+00 dispersed
Lac10g0925 Lac-Chr10:7368922 Lac13g0540 Lac-Chr13:3963364 3.50E-49 transposed
Lac11g0365 Lac-Chr11:3748758 Lac13g0540 Lac-Chr13:3963364 6.00E-45 transposed
Lac4g2548 Lac-Chr4:44677480 Lac13g0540 Lac-Chr13:3963364 6.20E-92 transposed
Lac5g2473 Lac-Chr5:43297322 Lac13g0540 Lac-Chr13:3963364 1.90E-27 transposed
Lac13g0540 Lac-Chr13:3963364 Lac3g0448 Lac-Chr3:3413697 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g379 . . . . . . . . Cmo04g01553 Cmo18g00996 . Cma18g00989 Car04g01538 Car18g00910 Sed08g0382 Cpe09g00328 Cpe01g01321 Bhi07g01273 Tan04g0802 Cmetu02g0065 Lac13g0540 Hepe01g1156 . . Cla05g02265 Cam05g2435 Cec05g2454 Cco05g2498 Clacu05g2426 Cmu05g2292 Cre05g2409 Cone13ag0794 Cone19ag0798 . . Lsi04g00213 Csa05g02653 Chy10g01185 Cme10g00219 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001665 2 2 2 3 2 2 3 2 2 2 2 2 3 2 3 3 2 3 3 2 2 1 2 2 2 2 2 6 2 2 70