Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0542 ATGACCCTCTGCATTAGAGCTTCAAAAGCCATAGCTACCACAGCTGCTTCTTACCCCTTTTCGTTCAAGGTACGCCTCCTTCTTCCCTTCTCTTCATTGCTCCATTCCTGCACTCTAAGCAGCAGCAGCATAGCAACGTTATCGGAAGCTCATTACAGAGACCTTATCTTCGATACAATTGAAGAAAAGCCTTGGGCCTTTTGCAATAGTAACTGGGTATCTGATCAATTTGGTGCTGTGATCATCGACCCTCACTTGTTTATTCGGGTCCTCGATTCCATTCGAATCAGACCTAGAGTTGCTCTGCGTTTCTTCCGATGGGTCTTGGCTCAGCCGGATTTTGAGGGATCGGAATTTGTGTTCTGTGCTATTCTTGATATTCTTGCTCAGAACAATTTGATGAGTTCGGCGTATTGGGTGATGGAGAGGGTGGTTGGCATACAAATGCACGGAGTTTCCGATGTTTTAATTGCTGGGCATATGTGTTTAGAAGCTTCAATTAAGCTTCTGGATATTCTGTTATTGATATACACGAAGAAATCAATGGTTGATGAATGCTTGTTGGTTTTTGAGAAAATGATTCGAAACGGTTTATTGCCTGATGTGAAGAACTGTAATAGGATTCTCAGGCTTCTAAGAGATAAAAATCTCGTGAGTAAAGCTAAAACTGTGTATAGAATGATGAAACAGTTTGGGATTAAGCCGACTATTGTCACGTATAATACTATGCTGGATTCCTTTTGCAAGGAAGGCCAAGTACATCAGGCTTTAGAGCTTCTATCAGAGATGCAAACGAGAGGGTGTTTCCCAAATGATGTAACATACAATGTGTTGGTCAATGGGTTGTCGAAGAAAGGAGAGCTTGAACAAGCAAAGGAACTTATTGAGGAGATGTTGAATTCAGGACTCAATGTTTCAGCATACACATATAATCCTTTGATCTATGGTTTTTGCAAGAAAGGATTGTTTGATGAAGCATTTGATCTTGTGGAAGAAATGATGAATAGAAGAGCTTTCCCAACTTTATCAACTTATAATACACTAATGTACGGCCTTTGCAAGTGGGGGCAAGTGACAGATGCTAGACTTCGGTTTTCTGATATGTTAAAAAGCAATTTTATGCCAGACATAGTTTCGTTCAACATCCTACTGTATGGTTACTGTAGATTTGGGAATATAAGTGAGGCTTTTCTATTGTTTGATGAATTGAAAAGCAGAAATCTCATTCCGACTGTGGTAACATATAATACACTTATATATGGTCTTTGCAGTTTGGGTTACTTGGACGTTGCTTTGCGGTTGAAAAAGGAAATGATTGATCAAGGGTTATTCCCTGACATCTTTACATATACCATATTGGTAAATGGGTCTTGCAAGATGGGGAATTTATCAATGGCTAGAGGGTTCTTTGATGAGATGCGGTGCAAAGGGTTGAAGCCTGATCGTTTTGCATATATCACTCGAATAATAGGAGAAATGAAGCTTGGTGATACATTCATAGCATACAGCATGCGAGAAGAAATGTTGGCAGAGGGCTTCCCTCCAGATGTCATCACATACAACGTGTTTGTGCATGGACTTTGTGAACAGGGAAATCTTGAAGAAGCGTGTGATCTGTTAGAGAACATGGTTCACGATGGTCTTGTTCCAGATCATGTGACATATACTAGTATCATTAATGCTTTTATGAAAAACGGGTATTTGAGGAAAGCCAGAGAGCTTTTCAATGAAATGCTCAGCAAGGGGTTAGCCCCTTCTGTAGTAACATATACAGTTCTCATTCATGCACATGCAGCTAAGGGAATGCTGGATCTAGCATTTATGTACTTCTCAAAAATGTTGGAGAAGGGTGTGCCAGCAAATGTAATTACGTACAATGCAATAATTAATGGTCTCTGCAAGGTGAGGAGAGTGGACGAGGCTTACAAGTACTTTGATGAGATGGAAGAAAAAGGAATTCTTCCAAATAAGTTTAGTTATACCATATTAATAAATGAGAACTGCAACGTGGATTATTGGGAAGAGGCTCTAAGATTGTACAGAGAAATGCTAGATAGAGAAATTCAACCTGATTCTTTTACACACAGTGTGTTTCTGAAGAATCTACACGCAAACTATAAAGAGCATGCAGTACAGTGTATAGAGAGTCTGATTGAAAGTGCTGAAGATAATGTAAATGCCAAGTGA 2187 39.64 MTLCIRASKAIATTAASYPFSFKVRLLLPFSSLLHSCTLSSSSIATLSEAHYRDLIFDTIEEKPWAFCNSNWVSDQFGAVIIDPHLFIRVLDSIRIRPRVALRFFRWVLAQPDFEGSEFVFCAILDILAQNNLMSSAYWVMERVVGIQMHGVSDVLIAGHMCLEASIKLLDILLLIYTKKSMVDECLLVFEKMIRNGLLPDVKNCNRILRLLRDKNLVSKAKTVYRMMKQFGIKPTIVTYNTMLDSFCKEGQVHQALELLSEMQTRGCFPNDVTYNVLVNGLSKKGELEQAKELIEEMLNSGLNVSAYTYNPLIYGFCKKGLFDEAFDLVEEMMNRRAFPTLSTYNTLMYGLCKWGQVTDARLRFSDMLKSNFMPDIVSFNILLYGYCRFGNISEAFLLFDELKSRNLIPTVVTYNTLIYGLCSLGYLDVALRLKKEMIDQGLFPDIFTYTILVNGSCKMGNLSMARGFFDEMRCKGLKPDRFAYITRIIGEMKLGDTFIAYSMREEMLAEGFPPDVITYNVFVHGLCEQGNLEEACDLLENMVHDGLVPDHVTYTSIINAFMKNGYLRKARELFNEMLSKGLAPSVVTYTVLIHAHAAKGMLDLAFMYFSKMLEKGVPANVITYNAIINGLCKVRRVDEAYKYFDEMEEKGILPNKFSYTILINENCNVDYWEEALRLYREMLDREIQPDSFTHSVFLKNLHANYKEHAVQCIESLIESAEDNVNAK 728
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3994433 3996619 - Lag0040338.1 Lac13g0542 591698

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0542 728 NCBIfam pentatricopeptide repeat 553 586 IPR002885 -
Lac13g0542 728 NCBIfam pentatricopeptide repeat 238 271 IPR002885 -
Lac13g0542 728 NCBIfam pentatricopeptide repeat 448 481 IPR002885 -
Lac13g0542 728 NCBIfam pentatricopeptide repeat 413 447 IPR002885 -
Lac13g0542 728 NCBIfam pentatricopeptide repeat 588 621 IPR002885 -
Lac13g0542 728 NCBIfam pentatricopeptide repeat 658 692 IPR002885 -
Lac13g0542 728 NCBIfam pentatricopeptide repeat 344 376 IPR002885 -
Lac13g0542 728 NCBIfam pentatricopeptide repeat 308 340 IPR002885 -
Lac13g0542 728 NCBIfam pentatricopeptide repeat 518 551 IPR002885 -
Lac13g0542 728 NCBIfam pentatricopeptide repeat 174 202 IPR002885 -
Lac13g0542 728 NCBIfam pentatricopeptide repeat 378 411 IPR002885 -
Lac13g0542 728 NCBIfam pentatricopeptide repeat 273 305 IPR002885 -
Lac13g0542 728 NCBIfam pentatricopeptide repeat 623 656 IPR002885 -
Lac13g0542 728 FunFam Pentatricopeptide repeat-containing protein At1g09900 229 299 - -
Lac13g0542 728 Gene3D Tetratricopeptide repeat domain 229 301 IPR011990 GO:0005515(InterPro)
Lac13g0542 728 Gene3D Tetratricopeptide repeat domain 87 228 IPR011990 GO:0005515(InterPro)
Lac13g0542 728 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 656 690 IPR002885 -
Lac13g0542 728 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 95 485 IPR050667 -
Lac13g0542 728 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 236 270 IPR002885 -
Lac13g0542 728 Pfam PPR repeat 442 474 IPR002885 -
Lac13g0542 728 Pfam PPR repeat 512 544 IPR002885 -
Lac13g0542 728 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 341 375 IPR002885 -
Lac13g0542 728 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 376 410 IPR002885 -
Lac13g0542 728 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 201 235 IPR002885 -
Lac13g0542 728 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 271 305 IPR002885 -
Lac13g0542 728 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 306 340 IPR002885 -
Lac13g0542 728 Pfam PPR repeat family 235 284 IPR002885 -
Lac13g0542 728 Pfam PPR repeat family 375 423 IPR002885 -
Lac13g0542 728 Pfam PPR repeat family 550 598 IPR002885 -
Lac13g0542 728 Pfam PPR repeat family 621 669 IPR002885 -
Lac13g0542 728 Pfam PPR repeat family 307 354 IPR002885 -
Lac13g0542 728 SUPERFAMILY TPR-like 275 694 IPR011990 GO:0005515(InterPro)
Lac13g0542 728 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 551 585 IPR002885 -
Lac13g0542 728 Gene3D Tetratricopeptide repeat domain 302 390 IPR011990 GO:0005515(InterPro)
Lac13g0542 728 Gene3D Tetratricopeptide repeat domain 391 493 IPR011990 GO:0005515(InterPro)
Lac13g0542 728 Gene3D Tetratricopeptide repeat domain 494 601 IPR011990 GO:0005515(InterPro)
Lac13g0542 728 Gene3D Tetratricopeptide repeat domain 602 725 IPR011990 GO:0005515(InterPro)
Lac13g0542 728 Pfam PPR repeat 173 198 IPR002885 -
Lac13g0542 728 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 516 550 IPR002885 -
Lac13g0542 728 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 621 655 IPR002885 -
Lac13g0542 728 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 446 480 IPR002885 -
Lac13g0542 728 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 586 620 IPR002885 -
Lac13g0542 728 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 166 200 IPR002885 -
Lac13g0542 728 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 411 445 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0542 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g381 . . . . . . . . Cmo04g01550 . . . . . Sed01g3001 . . Bhi07g01260 Tan04g0796 Cmetu10g0315 Lac13g0542 . . . . . . . . . . . . . Cone9ag0441 . Csa05g02048 Chy10g01188 Cme10g00216 . . . . . . . . . Cmo04g02188 Cmo15g00977 Cma04g02086 Cma15g00937 Car04g02025 Car15g00879 . . Bhi12g00865 . . . . . Lcy10g1458 Cla01g00587 Cam01g0613 Cec01g0604 Cco01g0629 Clacu01g0605 Cmu01g0578 Cre09g1927 Lsi09g00636 . Chy09g00878 Cme09g01412
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012317 1 3 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 0 1 2 0 27