Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0548 ATGAAGGGGAGCTTTCGAGCTTTCTCCGCCAGTGGCTTATGTAGTGGTCGATCGGTAGCAAGCTCGCTAAGCTTCGCTTCCCTCTCCCTCTTCTCTTTTTCAATGAAGTGGAAAGTCTTCACTCGAGACCCCGTTAGTAGCGGCGAGCGAGAGCGGACTGGGGGTTTGAGGGAGAAAGATGAAAGAAGGAGGACAGAAACGAGAATTCAGGAACGCAGCAGAAGTTGGGGAACCGATCCATCAGGCTCGATGGAGAACGGGAAGGAAGGCGCCATGGAAGAGATTTTACTGGCGAAGCAGAAGGAAAACAATCTCTCTTCAACATCGAGGGAGGCTTTTTTTGAAGAGGTGAAGAGAGTGGGATTCTTGGCGGCGCCGATGGTTGCCGTCACTTTGTCGCAGTTTTTGTTGCAGATGATCACGATGATGATGGTCGGTCATCTCGGCGAACTTGCTCTCTCCAGCTCCGCCATAGCAATTTCCATTTCTGGAGTTACAGGCTTCAGTCTTCTCTTAGGCTTGTCCAGTGCCCTCGAAACTCTATGTGGACAAGCTTATGGAGCTCAGCAATATCGGAAAGTTGGAGTTCAGACATACACAGCCATATTTTGCATGTTCTTAACTTGCATTCCTGTGTCTTTATCTTGGCTCTTCTTGGAAAAGCTGCTTATTTTCCTCGGCCAAGATCCTCTGATTTCGCATGAAGCTGGGAAATTCATTGTTTGGCTACTTCCTGCGCTCTTTGCTTATGCATTTCTTCAACCACTGGTGAGATATTTCCAGGCACAAAGTTTGGTAATCCCCATGTTCATTTGCTCTTGCATCACTCTCTGCTTCCATATACCATTTTCTTGGTTCATGGTGTACAAGGCAGGACTCAGAAATCTGGGAGGAGCATTAGCTATGAGTATTTCATATTGGCTGAATGTGACTTTGCTAGCATTATACATGATATTCTCGCCTAAATGTGAGAAAACACGTGGAGTCATATCTATGGAGCTGTTTCAAGGAATTCGAGAGTTCTTTAGCTTGGCAATTCCTTCTGCAGTTATGGTTTGTCTTGAATGGTGGTCATTTGAGCTACTTATCTTACTATCAGGGCTGTTGCCGAATCCAGAGCTTGAAACTTCAGTTTTATCTGTTTGTCTCAATACGATCACAACCCTTTATTCGATACCATATGGACTTGGTGCTGCAGGAAGCACAAGAGTCTCAAATGAACTAGGTGCTGGGAATCCGCAAGCGGCTCGTCAAGCAACAATTGCTGTTATATTCCTTGCCATCGTGGAAACCTCAATATTGAGCACAACCCTTTTTGCTCTTCGTCACGTCTTTGGTTATACTTTCAGCAATGAGAAGGATGTGGTGGATTATGTGGCCTCCATGGCACCTCTGGTTTGTATATCCGTGATATTGGACAGCATACAAGGAGTCGTTTCAGGCATTGCTAGAGGATGTGGATGGCAGCACATTGGTGCTTATGTAAACTTAGGGGCCTTCTATCTTTGTGGGATTCCAGTTGCTGCCATTCTTGCTTTCTGGGTGCACCTGAGAGGAAGAGGCCTTTGGATTGGCATACAAACTGGGGCTTTTGTGCAAACCATGTTGCTCTCCTTCATTACAAGTCGAATAAACTGGGAAGAACAGATTCTGGCGAGATCTGGAGCAAATCGTACAACAAATCGTCGCGAGCAACCCAGATATGGTACGAGCAACCCACATGAAGCGTTGAACCGACTCGGTGCGAGCAACCCAGATCTGATCTGGTACCGTTCAATGCGTTCATTGGGTAGAAAATTTTTCAAAGTTGTTCACTCAATGACTCATGCTGTCGTTTCTGAATCTGCAAAAATGGGTCTTCTTTCCCTTTACTTGCTTGCCCAGAATGCCATTTAA 1896 45.94 MKGSFRAFSASGLCSGRSVASSLSFASLSLFSFSMKWKVFTRDPVSSGERERTGGLREKDERRRTETRIQERSRSWGTDPSGSMENGKEGAMEEILLAKQKENNLSSTSREAFFEEVKRVGFLAAPMVAVTLSQFLLQMITMMMVGHLGELALSSSAIAISISGVTGFSLLLGLSSALETLCGQAYGAQQYRKVGVQTYTAIFCMFLTCIPVSLSWLFLEKLLIFLGQDPLISHEAGKFIVWLLPALFAYAFLQPLVRYFQAQSLVIPMFICSCITLCFHIPFSWFMVYKAGLRNLGGALAMSISYWLNVTLLALYMIFSPKCEKTRGVISMELFQGIREFFSLAIPSAVMVCLEWWSFELLILLSGLLPNPELETSVLSVCLNTITTLYSIPYGLGAAGSTRVSNELGAGNPQAARQATIAVIFLAIVETSILSTTLFALRHVFGYTFSNEKDVVDYVASMAPLVCISVILDSIQGVVSGIARGCGWQHIGAYVNLGAFYLCGIPVAAILAFWVHLRGRGLWIGIQTGAFVQTMLLSFITSRINWEEQILARSGANRTTNRREQPRYGTSNPHEALNRLGASNPDLIWYRSMRSLGRKFFKVVHSMTHAVVSESAKMGLLSLYLLAQNAI 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4017414 4024695 - Lag0040344.1 Lac13g0548 591704

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0548 631 CDD MATE_eukaryotic 116 550 IPR045069 GO:0042910(InterPro)|GO:1990961(InterPro)
Lac13g0548 631 MobiDBLite consensus disorder prediction 44 73 - -
Lac13g0548 631 MobiDBLite consensus disorder prediction 44 87 - -
Lac13g0548 631 Pfam MatE 347 510 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Lac13g0548 631 Pfam MatE 126 285 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Lac13g0548 631 MobiDBLite consensus disorder prediction 555 576 - -
Lac13g0548 631 NCBIfam MATE family efflux transporter 126 523 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Lac13g0548 631 PANTHER MULTIDRUG RESISTANCE PROTEIN 109 549 - GO:0016020(PANTHER)|GO:0022857(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0548 K03327 - - csv:101213643 766.148
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0548 Lac-Chr13:4017414 Lac13g0550 Lac-Chr13:4038714 2.10E-242 dispersed
Lac8g1315 Lac-Chr8:28753125 Lac13g0548 Lac-Chr13:4017414 4.00E-15 dispersed
Lac13g0547 Lac-Chr13:4009120 Lac13g0548 Lac-Chr13:4017414 1.50E-176 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g387 . . . . . . . . . Cmo18g00994 . Cma18g00986 . . . Cpe09g00331 Cpe01g01317 Bhi07g01253 . . Lac13g0548 Hepe01g1149 . . Cla05g02262 Cam05g2432 Cec05g2449 Cco05g2495 Clacu05g2421 Cmu05g2288 Cre05g2406 . . . . Lsi04g00207 Csa05g02660 Chy10g01191 Cme10g00211 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001043 2 6 4 2 3 1 0 1 1 2 0 1 2 3 3 2 1 3 3 1 3 1 4 6 6 3 3 7 5 3 82