Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0572 ATGAGAATCTCTCCGACTCCGCCTGCTTCTTCTTGCTCTTCGTCTTCCTCCTCATGCGTCGGCTCCGATTCCGGCATTGATACTAAGAACAATCTCTCCGCTCCTCACCGGCCGCAATCGGACAAAACCAGAGCCAAGCGGCGGCGCCGGAATAATCAGGACGATTCGAAATGCGAGATTCATAATCGCGACAGCAATGGAATCAACATCATCAACAACAACAACAACATCAACAACGCCTCTTCCGCTCGCCGGAGCTCCATTTACAGAGGAGTCACTAGGCACCGATGGACCGGCCGGTTCGAAGCGCATCTATGGGACAAGAGTTCGTGGAATAGCATTCAGAACAAGAAAGGAAGGCAAGGAGCTTACGATAACGAGGAAGCCGCCGCCCGAACTTATGACCTCGCTGCCCTCAAATACTGGGGCCCCGGAACCACCCTCAATTTCCCGGTAGAGTCGTACACGAGTGAAATGGAAGAAATGCGGAAAGTAACGAAGGAGGAATATTTGGCGTCGTTGCGGCGGCGGAGCAGTGGGTTTTCGAGAGGCGTTTCCAAGTACCGCGGCGTGGCCCGCCACCATCACAATGGCCGGTGGGAGGCTCGGATCGGCCGCGTTTTCGGAAGCAAATATCTTTACTTGGGAACTTACAACACTCAAGAAGAAGCAGCTGCAGCTTATGACATGGCTGCAATTGAGTACAGAGGAGCCAATGCAGTGACAAACTTTGACATTAGCAATTACATTGGGAGGTTAGAGAACAAATCATCAGATTTTCAAGCAGCAGAGCAACCAGAGGAGCCCAATTACTCCCCTGCTTCGTCCGAGGGCGAAGTAGTACAACAGCAGCAACAACAACAACAACAAACGACATTCTCGGGCGCGCTCGGCCTCCAGTTCTCGTCGATTGAGAACAACCCAACAATGGATGTCATGGAAGAACCTACACAAGACGATCATGATCTCCATTGGTCTTTCTTAGACACAGGATTCGTGCAGGTCCCAGACCTCCCGCTCGAGAAATCGAGCGAACTGGCCGACCTCTACTTCGACGAGATCGAGTTCGAGGACGACATCGACTTGATATTTGAAGGGAGCTTGGAGAGCAAGAGCATTGATGATCAGGGTAATAATGAAGAAGATCATAATGTTGGGAAGATGGAGATGAACAATGAGAAAATGAGATTGTTCTCAACAACTACTTCACCATCTTCTTCATCAATAACCACCTCGGTTTCGTGTGAATTTAGGGTTTGA 1260 50.24 MRISPTPPASSCSSSSSSCVGSDSGIDTKNNLSAPHRPQSDKTRAKRRRRNNQDDSKCEIHNRDSNGINIINNNNNINNASSARRSSIYRGVTRHRWTGRFEAHLWDKSSWNSIQNKKGRQGAYDNEEAAARTYDLAALKYWGPGTTLNFPVESYTSEMEEMRKVTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGSKYLYLGTYNTQEEAAAAYDMAAIEYRGANAVTNFDISNYIGRLENKSSDFQAAEQPEEPNYSPASSEGEVVQQQQQQQQQTTFSGALGLQFSSIENNPTMDVMEEPTQDDHDLHWSFLDTGFVQVPDLPLEKSSELADLYFDEIEFEDDIDLIFEGSLESKSIDDQGNNEEDHNVGKMEMNNEKMRLFSTTTSPSSSSITTSVSCEFRV 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4237099 4241358 + Lag0040368.1 Lac13g0572 591728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0572 419 ProSiteProfiles AP2/ERF domain profile. 187 245 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac13g0572 419 Gene3D AP2/ERF domain 88 153 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac13g0572 419 Gene3D AP2/ERF domain 186 247 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac13g0572 419 SUPERFAMILY DNA-binding domain 186 247 IPR016177 GO:0003677(InterPro)
Lac13g0572 419 MobiDBLite consensus disorder prediction 1 38 - -
Lac13g0572 419 CDD AP2 186 247 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac13g0572 419 MobiDBLite consensus disorder prediction 1 66 - -
Lac13g0572 419 FunFam AP2-like ethylene-responsive transcription factor 87 153 - -
Lac13g0572 419 FunFam AP2-like ethylene-responsive transcription factor 186 247 - -
Lac13g0572 419 ProSiteProfiles AP2/ERF domain profile. 88 151 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac13g0572 419 MobiDBLite consensus disorder prediction 47 62 - -
Lac13g0572 419 Pfam AP2 domain 186 237 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac13g0572 419 MobiDBLite consensus disorder prediction 259 293 - -
Lac13g0572 419 CDD AP2 87 152 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac13g0572 419 SMART rav1_2 88 157 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac13g0572 419 SMART rav1_2 187 251 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac13g0572 419 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Lac13g0572 419 MobiDBLite consensus disorder prediction 398 419 - -
Lac13g0572 419 PRINTS Ethylene responsive element binding protein signature 89 100 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac13g0572 419 PRINTS Ethylene responsive element binding protein signature 227 247 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac13g0572 419 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 52 300 - -
Lac13g0572 419 SUPERFAMILY DNA-binding domain 87 153 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0572 Lac-Chr13:4237099 Lac4g2723 Lac-Chr4:46172242 1.90E-77 dispersed
Lac13g0572 Lac-Chr13:4237099 Lac8g0535 Lac-Chr8:7699221 1.80E-75 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23163 PF00847 AP2 2.80E-09 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0572 - - - 0.0