Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0573 ATGAACTCAGTTCCGTTCATTTTCCTTCTCCTTCTCTCTCTCCGCGTCGCCGGAGCTTCCGATTCTCCTCCGCCCTCCGCCGCCCTCTGTAAATCCACTCTCTACCCTAAGCTCTGCCGCTCCATTCTCTCCTCCATCCGATTCTCCCCCTCCGATCCCTACGGCTACGGAAAATTCTCCGTCAAGAGCTGCCTCAAACAGGCGATCAAAATGTCGAGCGTAATCGGCGACTATCTCAACCGAGGAGGCGATTCGAGGCTGAATCGGCAGGAGGCCGGCGCTCTGAGCGACTGCAGAGAGCTTTCCGATTCGAATGTGGAGTTTCTCCGGTCGATTGAGGCAGTACTGGACGCGGCGGAGGACGTCGATGAGGATCTGGTGGAGCGAGTTGAGAGTATTTTGAGCGCGATCGTGACGAACGGCCAGACTTGCATCGACGGATTGGTGGAATCGAGGAGTAGTTTGGGGAATGCGCTATCGGCGCCGCTGTCGAGCGCCGGGAAGCTGTACAGCGTGTCGTTGGGATTGGTTACGAACTCGCTGTCGCGGCGGTGGAAGAAGCGGCGGCAGAAGGGAGGGAGCTTTCCGGCAGCGGCGCGGAACAGAGAGCCACTGAACACGCTGATCAAGGGACTTCATAAAATGGGATCCTGCAACCAATCCACAATCTGCTCAGGAAGGAAGCGCTTGTTAACTGATTTAGGAAGCACAGGCATTTTTATAAACAACACTGTGGTTGTTAGCTCAACTGGTGCTGACAACTTCACATCAATTGGTGATGCCATTGCATTTGCTCCCAACAATTCAATGCCTGAAGATGGCTACTTTGTTATCTATGTTAGACAAGGATATTACGAAGAATACGTCGTCGTCCCCAAATACAAAACCAATATAATGCTCATCGGCGATGGCATTAACCGAACCGTCATCACCGGAAACCATAACGTCGTCGATGGTTGGACGACTTACAATTCTTCTACCTTTACTGTTTGTGGGGATGGATTTGTTGCAATAGATGTGACATTCAGGAACACAGCAGGGCCAGAGAAGCACCAAGCAGTGGCCGTTCGCAACAGTGCGGACCTCTCGACATTCTACCGATGCAGTTTCGAGGGTTACCAAGACACGCTCTACGTCCATTCCCTAAGGCAATTCTACAGAGAATGTGACATCTATGGCACAGTAGATTTCATCTTCGGCAATGCAGCAGCAGTTTTCCAAAGATGCAATCTATACGCCAGAAAGCCACTCCCCAACCAAAAGAACGCCTTCACGGCGCAGGGCCGAACCGATCCGAACCAAAACACCGGCATCTCGATCCACAACTGCACGATCAAGGCAGCGCCCGACTGGGAGATGGACGACCCAAACGTGACGACGACGACGACGACAAACTTTCTCGGGCGGCCGTGGAAGGCGTACTCGAGGACAGTGTACATGCAGTCATACATTGGGGATTTGATCAGCCCTGTGGGGTGGCTGGAGTGGAATGGAACAGCAGGATTGGACACATTGTATTATGGAGAGTTTGAGAATTATGGACCAGGAGCCAACACAAGCATGAGAATCAACTGGCCTGGCTATAGCTTGATGAATTCTACACAGGCTTTCAATTTCACTGTCTATAACTTTACAATGGGAGATACTTGGCTGCCTTACACTGATATTCCCTTCTCTGGAGGTTTGTTATGA 1692 51.54 MNSVPFIFLLLLSLRVAGASDSPPPSAALCKSTLYPKLCRSILSSIRFSPSDPYGYGKFSVKSCLKQAIKMSSVIGDYLNRGGDSRLNRQEAGALSDCRELSDSNVEFLRSIEAVLDAAEDVDEDLVERVESILSAIVTNGQTCIDGLVESRSSLGNALSAPLSSAGKLYSVSLGLVTNSLSRRWKKRRQKGGSFPAAARNREPLNTLIKGLHKMGSCNQSTICSGRKRLLTDLGSTGIFINNTVVVSSTGADNFTSIGDAIAFAPNNSMPEDGYFVIYVRQGYYEEYVVVPKYKTNIMLIGDGINRTVITGNHNVVDGWTTYNSSTFTVCGDGFVAIDVTFRNTAGPEKHQAVAVRNSADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAVFQRCNLYARKPLPNQKNAFTAQGRTDPNQNTGISIHNCTIKAAPDWEMDDPNVTTTTTTNFLGRPWKAYSRTVYMQSYIGDLISPVGWLEWNGTAGLDTLYYGEFENYGPGANTSMRINWPGYSLMNSTQAFNFTVYNFTMGDTWLPYTDIPFSGGLL 563
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4247371 4254129 + Lag0040369.1 Lac13g0573 591729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0573 563 CDD PMEI-like_3 28 179 - -
Lac13g0573 563 SUPERFAMILY Pectin lyase-like 240 561 IPR011050 -
Lac13g0573 563 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 180 IPR035513 -
Lac13g0573 563 SMART PMEI_2 21 176 IPR006501 GO:0004857(InterPro)
Lac13g0573 563 Pfam Pectinesterase 245 548 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lac13g0573 563 PANTHER PECTINESTERASE 9 552 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Lac13g0573 563 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 179 IPR035513 -
Lac13g0573 563 Pfam Plant invertase/pectin methylesterase inhibitor 28 175 IPR006501 GO:0004857(InterPro)
Lac13g0573 563 FunFam Pectinesterase 239 562 - -
Lac13g0573 563 ProSitePatterns Pectinesterase signature 2. 391 400 IPR033131 -
Lac13g0573 563 Gene3D - 239 562 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0573 Lac-Chr13:4247371 Lac4g2485 Lac-Chr4:44186106 7.50E-146 dispersed
Lac13g0573 Lac-Chr13:4247371 Lac9g0505 Lac-Chr9:9587043 4.60E-119 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0573 K01051 - csv:101206112 994.571