Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0596 ATGGGGGTCCCTGCAACTTTGGGCGACGATTTTCTCAGAGAACGAGCGGCGAAGATGAGAGAATCACTGCAAAAGAGCCAAACCATTACCGATAACGTCGTCTCGATTCTCGGCTCCTTTGACCACCGTCTTTCTGCTCTCGAAACCGCCATGCGTCCTACCCAGATCAGAACCAATTCAATTCGTAAAGCTCATGAGAACATTGATAAGACTTTGAAGGCTGCGGAGGTTATTTTAGCACAATTTGATCTCTCTCGTCAGGCAGAAACGAAAATACTTAAAGGGCCACATGAGGATTTGGAGAGTTATCTCGGGGCAATTGGTCAACTAAGAAACATTATTAAATTCTTTAGCAGCCATAAAAGTTTCAAGAGTAGTGAGGTAGTGCTTAACCAGTCAAATAATCTGCTTGCAAAAGCCATTTCAAAGCTAGAAGATGAGTTCAGACAACTATTATCTTCCTACAGCAAACCTGTGGAGCCTGAGCGTCTTTTTGATTGCCTGCCAAAATCGTTGCAACCATCTTCAGAATCTCCTGGTCAACACGATGATTCAGGTGGAAAGAATCCTTCCTCAAATCATCACGCTGCACATCCTGATAATAATTTGGAGACTGCTGTCTACACACCTCCCACTCTAATACCACCACGTGTCCTACCACTGCTGCACGATTTATCACTGCAGATGGTTCAAGCTGGTCATCAACAGCAAATTTTAAAAATCTACAGGGATACCCGTTCAGTTGTTTTGGAAGAAAGCCTACGAAAATTGGGAGTTGAAAAACTCAGCAAAGATGATGTCCAGAAGATGGCGTGGGAGGTTTTAGAGGCAAAAATCGGGAACTGGATTCATTTTATGCGTATTGCAGTCAAACTGCTGTTTGCTGGAGAACGAAAAGTGTGTGATCAAATATTTGAAGGCTTTGAATCGCTTAGAGATCAATCCTTTGCAGAGGTTACAAGTAGTAGTGTGTCTGTGCTATTCAGTTTTGGGGAGGCAATTGCTAAAAGCAAGAGGTCGCCAGAGAAGTTGTTTGTACTTTTGGATATGTATGAAATAATGCGAGAGCTTCACTCAGAGATTGATACGATTTTTAAGGGTAAAGCATGCAACGAGATCAGAGAATCTGCATCAGGTTTGACCAAACGGCTTGCTCAGACAGCCAAGGATACATTTGGTGATTTTGAGGAAGCTGTTGAAAAAGATGCAACAAAAACTGCAGTGTTGGATGGAACTGTTCATCCTTTAACAAGCTATGTGATTAATTATGTCAAATTTCTTTTCGACTATCAAGCAACCTTGAAGCAGCTTTTCCAAGAATTTGAAGATAGTGGTCAAACAAGTTCGGAATTGGCCACTGTCACAATGCAAATCATGCAGGCTCTTCAATCTAATTTGGACGGGAAATCTATGCATTACAAAGATCCTTCTTTGACTCACTTATTCCTCATGAACAACATTCATTATATAGTTAGATCTGTTCGCAGATCTGAAGCCAAGGATTTGCTAGGGGACGATTGGGTTCAGAGACATAGGAGGATTGTACAACAACATGCAAATCAGTATAAAAGGAAGGCTTGGGCAAAGATTCTGCAATGTCTCTCTGTTCAAGGGTTAACTTCATCTGGCGGTGGCAGTGTACCCGGTATAGATGGAGGAAACAGTAGCGGAGTTTCTAGGGCACTTATTAAAGACAGGTTCAAGACTTTCAACATGCAGTTTGAGGAACTGCATCAAAGACAATCTCAATGGGCAGTTCCTGATACTGAGTTGCGGGAGTCTCTAAGACTTTCAGTTGCTGAAGTCTTACTTCCTGCATACAGATCCTTCCTAAAACGTTTCGGGCCACTAGTTGATGGTGGAAAGAATCCCCAAAAGTATGTCAGATACCAACCAGAGGATCTCGAAAGGATGCTCGGAGAATTTTTCGAGGGGAAGAACTTGAGTGAACCCAAGCGCTAG 1962 42.56 MGVPATLGDDFLRERAAKMRESLQKSQTITDNVVSILGSFDHRLSALETAMRPTQIRTNSIRKAHENIDKTLKAAEVILAQFDLSRQAETKILKGPHEDLESYLGAIGQLRNIIKFFSSHKSFKSSEVVLNQSNNLLAKAISKLEDEFRQLLSSYSKPVEPERLFDCLPKSLQPSSESPGQHDDSGGKNPSSNHHAAHPDNNLETAVYTPPTLIPPRVLPLLHDLSLQMVQAGHQQQILKIYRDTRSVVLEESLRKLGVEKLSKDDVQKMAWEVLEAKIGNWIHFMRIAVKLLFAGERKVCDQIFEGFESLRDQSFAEVTSSSVSVLFSFGEAIAKSKRSPEKLFVLLDMYEIMRELHSEIDTIFKGKACNEIRESASGLTKRLAQTAKDTFGDFEEAVEKDATKTAVLDGTVHPLTSYVINYVKFLFDYQATLKQLFQEFEDSGQTSSELATVTMQIMQALQSNLDGKSMHYKDPSLTHLFLMNNIHYIVRSVRRSEAKDLLGDDWVQRHRRIVQQHANQYKRKAWAKILQCLSVQGLTSSGGGSVPGIDGGNSSGVSRALIKDRFKTFNMQFEELHQRQSQWAVPDTELRESLRLSVAEVLLPAYRSFLKRFGPLVDGGKNPQKYVRYQPEDLERMLGEFFEGKNLSEPKR 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4412545 4420724 + Lag0040392.1 Lac13g0596 591752

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0596 653 MobiDBLite consensus disorder prediction 171 199 - -
Lac13g0596 653 PANTHER EXOCYST COMPLEX PROTEIN EXO70 15 646 IPR004140 GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(PANTHER)|GO:0006887(InterPro)
Lac13g0596 653 MobiDBLite consensus disorder prediction 169 207 - -
Lac13g0596 653 Pfam Exocyst complex component Exo70 N-terminal 71 153 - -
Lac13g0596 653 SUPERFAMILY Cullin repeat-like 78 644 IPR016159 -
Lac13g0596 653 Gene3D Exocyst complex component Exo70 76 653 - -
Lac13g0596 653 Pfam Exo70 exocyst complex subunit C-terminal 281 640 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0596 K07195 - - csv:101206262 1179.08
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0582 Lac-Chr10:4476452 Lac13g0596 Lac-Chr13:4412545 1.10E-92 dispersed
Lac13g0596 Lac-Chr13:4412545 Lac1g2316 Lac-Chr1:44527486 1.60E-256 dispersed
Lac13g0596 Lac-Chr13:4412545 Lac3g0086 Lac-Chr3:577593 2.30E-98 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac13g0596 . 10 653 EXO70 exocyst subunit family AT5G03540 76.6 1.4e-284 976.1
Lac1g2316 . 1 600 EXO70 exocyst subunit family AT5G03540 71.6 4.2e-249 858.2
Lac1g2316 . 1 603 EXO70 exocyst subunit family AT5G52340 78.6 5.2e-273 937.6
Lac13g0596 . 12 653 EXO70 exocyst subunit family AT5G52340 74.0 1.3e-271 932.9
Lac13g0596 . 147 653 EXO70 exocyst subunit family AT5G52350 58.7 4.9e-164 575.5
Lac1g2316 . 145 603 EXO70 exocyst subunit family AT5G52350 61.7 1.7e-156 550.4
Lac7g2884 . 1 624 EXO70 exocyst subunit family AT5G58430 67.1 2.0e-245 845.9
Lac7g2884 . 1 623 EXO70 exocyst subunit family AT1G07000 51.2 3.8e-172 602.4
Lac7g1288 . 55 668 EXO70 exocyst subunit family AT5G13150 53.1 1.2e-174 610.9
Lac8g1970 . 102 715 EXO70 exocyst subunit family AT5G13990 53.8 3.3e-188 656.0
Lac12g2533 . 106 706 EXO70 exocyst subunit family AT1G72470 65.2 8.2e-218 754.2
Lac12g2533 . 106 704 EXO70 exocyst subunit family AT1G54090 63.3 2.1e-213 739.6
Lac12g2533 . 106 705 EXO70 exocyst subunit family AT3G14090 65.3 6.4e-223 771.2
Lac10g0582 . 19 657 EXO70 exocyst subunit family AT5G50380 64.2 7.0e-231 797.7
Lac3g0086 . 13 650 EXO70 exocyst subunit family AT5G50380 62.6 3.3e-228 788.9
Lac6g1170 . 15 682 EXO70 exocyst subunit family AT4G31540 73.7 4.5e-294 1007.7
Lac13g0853 . 59 609 EXO70 exocyst subunit family AT3G55150 50.8 2.3e-151 533.5
Lac7g2632 . 1 172 EXO70 exocyst subunit family AT3G55150 52.3 1.6e-43 175.3
Lac13g0853 . 24 606 EXO70 exocyst subunit family AT2G39380 51.1 9.0e-156 548.1
Lac10g3074 . 25 632 EXO70 exocyst subunit family AT3G09520 54.9 2.0e-179 626.7
Lac9g2512 . 12 600 EXO70 exocyst subunit family AT5G59730 50.2 1.4e-156 550.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001390 3 2 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 5 4 2 3 1 2 2 2 2 2 4 2 2 74