Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0596 ATGGGGGTCCCTGCAACTTTGGGCGACGATTTTCTCAGAGAACGAGCGGCGAAGATGAGAGAATCACTGCAAAAGAGCCAAACCATTACCGATAACGTCGTCTCGATTCTCGGCTCCTTTGACCACCGTCTTTCTGCTCTCGAAACCGCCATGCGTCCTACCCAGATCAGAACCAATTCAATTCGTAAAGCTCATGAGAACATTGATAAGACTTTGAAGGCTGCGGAGGTTATTTTAGCACAATTTGATCTCTCTCGTCAGGCAGAAACGAAAATACTTAAAGGGCCACATGAGGATTTGGAGAGTTATCTCGGGGCAATTGGTCAACTAAGAAACATTATTAAATTCTTTAGCAGCCATAAAAGTTTCAAGAGTAGTGAGGTAGTGCTTAACCAGTCAAATAATCTGCTTGCAAAAGCCATTTCAAAGCTAGAAGATGAGTTCAGACAACTATTATCTTCCTACAGCAAACCTGTGGAGCCTGAGCGTCTTTTTGATTGCCTGCCAAAATCGTTGCAACCATCTTCAGAATCTCCTGGTCAACACGATGATTCAGGTGGAAAGAATCCTTCCTCAAATCATCACGCTGCACATCCTGATAATAATTTGGAGACTGCTGTCTACACACCTCCCACTCTAATACCACCACGTGTCCTACCACTGCTGCACGATTTATCACTGCAGATGGTTCAAGCTGGTCATCAACAGCAAATTTTAAAAATCTACAGGGATACCCGTTCAGTTGTTTTGGAAGAAAGCCTACGAAAATTGGGAGTTGAAAAACTCAGCAAAGATGATGTCCAGAAGATGGCGTGGGAGGTTTTAGAGGCAAAAATCGGGAACTGGATTCATTTTATGCGTATTGCAGTCAAACTGCTGTTTGCTGGAGAACGAAAAGTGTGTGATCAAATATTTGAAGGCTTTGAATCGCTTAGAGATCAATCCTTTGCAGAGGTTACAAGTAGTAGTGTGTCTGTGCTATTCAGTTTTGGGGAGGCAATTGCTAAAAGCAAGAGGTCGCCAGAGAAGTTGTTTGTACTTTTGGATATGTATGAAATAATGCGAGAGCTTCACTCAGAGATTGATACGATTTTTAAGGGTAAAGCATGCAACGAGATCAGAGAATCTGCATCAGGTTTGACCAAACGGCTTGCTCAGACAGCCAAGGATACATTTGGTGATTTTGAGGAAGCTGTTGAAAAAGATGCAACAAAAACTGCAGTGTTGGATGGAACTGTTCATCCTTTAACAAGCTATGTGATTAATTATGTCAAATTTCTTTTCGACTATCAAGCAACCTTGAAGCAGCTTTTCCAAGAATTTGAAGATAGTGGTCAAACAAGTTCGGAATTGGCCACTGTCACAATGCAAATCATGCAGGCTCTTCAATCTAATTTGGACGGGAAATCTATGCATTACAAAGATCCTTCTTTGACTCACTTATTCCTCATGAACAACATTCATTATATAGTTAGATCTGTTCGCAGATCTGAAGCCAAGGATTTGCTAGGGGACGATTGGGTTCAGAGACATAGGAGGATTGTACAACAACATGCAAATCAGTATAAAAGGAAGGCTTGGGCAAAGATTCTGCAATGTCTCTCTGTTCAAGGGTTAACTTCATCTGGCGGTGGCAGTGTACCCGGTATAGATGGAGGAAACAGTAGCGGAGTTTCTAGGGCACTTATTAAAGACAGGTTCAAGACTTTCAACATGCAGTTTGAGGAACTGCATCAAAGACAATCTCAATGGGCAGTTCCTGATACTGAGTTGCGGGAGTCTCTAAGACTTTCAGTTGCTGAAGTCTTACTTCCTGCATACAGATCCTTCCTAAAACGTTTCGGGCCACTAGTTGATGGTGGAAAGAATCCCCAAAAGTATGTCAGATACCAACCAGAGGATCTCGAAAGGATGCTCGGAGAATTTTTCGAGGGGAAGAACTTGAGTGAACCCAAGCGCTAG 1962 42.56 MGVPATLGDDFLRERAAKMRESLQKSQTITDNVVSILGSFDHRLSALETAMRPTQIRTNSIRKAHENIDKTLKAAEVILAQFDLSRQAETKILKGPHEDLESYLGAIGQLRNIIKFFSSHKSFKSSEVVLNQSNNLLAKAISKLEDEFRQLLSSYSKPVEPERLFDCLPKSLQPSSESPGQHDDSGGKNPSSNHHAAHPDNNLETAVYTPPTLIPPRVLPLLHDLSLQMVQAGHQQQILKIYRDTRSVVLEESLRKLGVEKLSKDDVQKMAWEVLEAKIGNWIHFMRIAVKLLFAGERKVCDQIFEGFESLRDQSFAEVTSSSVSVLFSFGEAIAKSKRSPEKLFVLLDMYEIMRELHSEIDTIFKGKACNEIRESASGLTKRLAQTAKDTFGDFEEAVEKDATKTAVLDGTVHPLTSYVINYVKFLFDYQATLKQLFQEFEDSGQTSSELATVTMQIMQALQSNLDGKSMHYKDPSLTHLFLMNNIHYIVRSVRRSEAKDLLGDDWVQRHRRIVQQHANQYKRKAWAKILQCLSVQGLTSSGGGSVPGIDGGNSSGVSRALIKDRFKTFNMQFEELHQRQSQWAVPDTELRESLRLSVAEVLLPAYRSFLKRFGPLVDGGKNPQKYVRYQPEDLERMLGEFFEGKNLSEPKR 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4412545 4420724 + Lag0040392.1 Lac13g0596 591752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0596 653 MobiDBLite consensus disorder prediction 171 199 - -
Lac13g0596 653 PANTHER EXOCYST COMPLEX PROTEIN EXO70 15 646 IPR004140 GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(PANTHER)|GO:0006887(InterPro)
Lac13g0596 653 MobiDBLite consensus disorder prediction 169 207 - -
Lac13g0596 653 Pfam Exocyst complex component Exo70 N-terminal 71 153 - -
Lac13g0596 653 SUPERFAMILY Cullin repeat-like 78 644 IPR016159 -
Lac13g0596 653 Gene3D Exocyst complex component Exo70 76 653 - -
Lac13g0596 653 Pfam Exo70 exocyst complex subunit C-terminal 281 640 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0582 Lac-Chr10:4476452 Lac13g0596 Lac-Chr13:4412545 1.10E-92 dispersed
Lac13g0596 Lac-Chr13:4412545 Lac1g2316 Lac-Chr1:44527486 1.60E-256 dispersed
Lac13g0596 Lac-Chr13:4412545 Lac3g0086 Lac-Chr3:577593 2.30E-98 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0596 K07195 - csv:101206262 1179.08