Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac13g0636 | ATGCTTCTCTCTCTTTTTATATCAACTCTTTTTTCCCTCTCTCCCAATTCCCCAAATCTCAATGGCTTCTTTCTCCCTCATTGCCTTTTTCCTCTCCGGTTTAATCTTCTTCCTCACCAGAAAACCCAAAAAAACCAGCCCCAAACTCCCCCTGGACCGCCCGGTTGGCCCCTCGTCGGCAACCTCTTCCAAGTCGCCCGGTCCAAGAAACCCTTCTTCGAATACATCGAAGATCAACGCCAAATCTACGGCCCGATTTTTACCCTCAAAATGGGCACCAGAACCATGATTGTACTGAGCGATTCGAATCTCGTTCACGAAGCTCTGATAAAAAAGAGGGCAGTTTTTGCTGACCGGCCCAGAGAAAATCCTACCCGGACTATTTTCAGCAGCAACAAATTTTCCGTCAATGCGGCGGTTTACGGCCCTGTATGGCGGTCCCTCCGCCGCAACATGGTGGAGAACATGCTCAACTCCGGCAAGGTGAAGGCGTTTCGCGGCGTCAGAGAAAAGGCGATGGAAAAATTCGTGAAACGGTTGCGCGACGAGGCCGAGGGCGAAAACGGCGTCGTTTGGGTTTTGAAAAACGCGCGTTTCGCGGTGTTTTGGATCATGTTGACGATGTGTTTCGGATTCGAAATGGAAGAAGAAACGGTGGTGGAAATGGACGAGATTCTCAAATCCGTTCTGATCACGCTCGATCCGAGAATCGACGATTATTTGCCGATTCTCACGCCGTTTTTTTTTTTCGAGAGAGAGCATGCGATGAGAGTTCGAAAGCGTCAAGTGGAATTCGTCGTTGGGCTGATTAATCGGCGGCGGCGGGCGTTGGATAATCCGGCGTCCGACGGCGCTGCGACGTCGTTTTCGTATCTGGATACGCTTCTCGATTTGAAATTGGAGGGCGGCGGAGGGAGAAGGAGGAGGACGGCGACGGACGAGGAATTGGTGACGCTCTGTTCGGAGTTTTTGAACGGCGGAACGGACACGACGGCGACGGCGATAGAGTGGGGGATGGCGGAGTTGATAGCGAATCCGGAAGTTCAGAGGAAGGTGGTGGAAGAGATAAAAGCGACGGTTGGTGAAAAGAAAGTGGACGAGAAAGATGTGGAGAAAATGCCTTATCTAAAAGCGGTTGTGAAAGAAGTGCTTCGGAAACATCCTCCGACGTTCTTTGCTTTGACGCACTCCGTGACGGAGCCGGCGAAATTGGCAGGATACGATATCCCAAAAGACACGAACGTGGAATTCTTCTTACCCGCCATTGGAGGGGATCCGAAGCTGTGGAAGAATCCAGAGAAGTTCGAACCGGAAAGATTTTACTCCGGCGAGGAAGAAGCCGACATAACCGGCGTCACCAGCGTCAGAATGATGCCGTTCGGCGTCGGGCGGCGGATCTGCCCGGGTCTGGGAATGGCCACCGTCCACATTCATTTAATGCTTGCCAGAATGCTGCAGGAATTCGAATGGACCGCCTTTCCGCCGCCGAGCTCCGTCGACTTTTCATGGAAGATGGAGTTCACCGTCGTCATGAAGAATCCTCTTAGGGCTGTCATCAAAACTAGGGTTTGA | 1572 | 51.97 | MLLSLFISTLFSLSPNSPNLNGFFLPHCLFPLRFNLLPHQKTQKNQPQTPPGPPGWPLVGNLFQVARSKKPFFEYIEDQRQIYGPIFTLKMGTRTMIVLSDSNLVHEALIKKRAVFADRPRENPTRTIFSSNKFSVNAAVYGPVWRSLRRNMVENMLNSGKVKAFRGVREKAMEKFVKRLRDEAEGENGVVWVLKNARFAVFWIMLTMCFGFEMEEETVVEMDEILKSVLITLDPRIDDYLPILTPFFFFEREHAMRVRKRQVEFVVGLINRRRRALDNPASDGAATSFSYLDTLLDLKLEGGGGRRRRTATDEELVTLCSEFLNGGTDTTATAIEWGMAELIANPEVQRKVVEEIKATVGEKKVDEKDVEKMPYLKAVVKEVLRKHPPTFFALTHSVTEPAKLAGYDIPKDTNVEFFLPAIGGDPKLWKNPEKFEPERFYSGEEEADITGVTSVRMMPFGVGRRICPGLGMATVHIHLMLARMLQEFEWTAFPPPSSVDFSWKMEFTVVMKNPLRAVIKTRV | 523 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 4715228 | 4718245 | - | Lag0040432.1 | Lac13g0636 | 591792 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac13g0636 | 523 | FunFam | Cytochrome P450 family protein | 43 | 523 | - | - | |
| Lac13g0636 | 523 | PRINTS | E-class P450 group I signature | 104 | 125 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0636 | 523 | PRINTS | E-class P450 group I signature | 467 | 490 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0636 | 523 | PRINTS | E-class P450 group I signature | 80 | 99 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0636 | 523 | PRINTS | E-class P450 group I signature | 335 | 361 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0636 | 523 | PRINTS | E-class P450 group I signature | 418 | 442 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0636 | 523 | PRINTS | E-class P450 group I signature | 377 | 395 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0636 | 523 | PRINTS | E-class P450 group I signature | 315 | 332 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0636 | 523 | PRINTS | E-class P450 group I signature | 457 | 467 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0636 | 523 | Pfam | Cytochrome P450 | 50 | 500 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0636 | 523 | PANTHER | FLAVONOID 3'-MONOOXYGENASE-RELATED | 35 | 521 | IPR051103 | GO:0016020(PANTHER)|GO:0016709(PANTHER) | |
| Lac13g0636 | 523 | CDD | CYP77_89 | 82 | 516 | - | - | |
| Lac13g0636 | 523 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 460 | 469 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lac13g0636 | 523 | PRINTS | P450 superfamily signature | 467 | 478 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0636 | 523 | PRINTS | P450 superfamily signature | 458 | 467 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0636 | 523 | PRINTS | P450 superfamily signature | 378 | 389 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0636 | 523 | PRINTS | P450 superfamily signature | 326 | 343 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0636 | 523 | Gene3D | Cytochrome P450 | 41 | 523 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0636 | 523 | SUPERFAMILY | Cytochrome P450 | 50 | 522 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac13g0636 | Lac-Chr13:4715228 | Lac1g3225 | Lac-Chr1:52219002 | 9.50E-111 | dispersed | |
| Lac13g0636 | Lac-Chr13:4715228 | Lac8g2321 | Lac-Chr8:41359684 | 8.60E-189 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac13g0636 | K21995 | - | csv:101217068 | 756.518 |