Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0648 ATGTTGGCAATGGAGAAGGATTTTGATGCCAAGTTGATGATTCAGGGCAACGCTTCTAATGGCGGCAATGTTCAGAGATCCAAGAGCTTTGCGTTTCGAGCTCCTCAGGAGAATTTTACCATCCAGGATTTTGAATTGGGAAAGATATATGGCGTTGGCTCGTATTCGAAGGTTGTGAGGGCGAAGAAGAAGGACACAGGAATGGTATATGCATTGAAGATAATGGACAAAAAATTCATCACCAAAGAAAATAAAACTGCTTATGTGAAGTTGGAAAGAATTGTACTTGATCAGTTGGACCATCCTGGTGTTGTCAGACTATTTTTTACCTTTCAGGATACTTTTTCTTTGTATATGGCATTGGAGTCCTGTGAAGGTGGAGAACTTTTTGATCAGATTACTAGGAAAGGTCGTCTGTCAGAGGACGAAGCTCGGTTTTATGCTGCAGAAGTGGTCGATGCCCTTGAATACATACACAACATGGGATTGATACACCGAGATATCAAGCCTGAGAACTTGCTGCTGACTACTGATGGACATATCAAAATAGCTGATTTTGGGAGTGTAAAGCCTATGGTGGATAGTCGAATTACCGTGCTTCCAAATGCAGCATCAGATGATAAAGCTTGTACATTTGTGGGCACTGCTGCATATGTTCCTCCAGAAGTCCTTAATTCCTCCCCTGCAACTTTTGGAAATGACCTTTGGGCGCTTGGGTGCACTGTGTACCAGATGCTTTCAGGGACCTCTCCTTTTAAGGATGCTAGTGAGTGGCTTATTTTCCAAAAGATTGTAGCACGAGATATAAAATTCCCCAGCTATTTTTCAGAGCAAGCCAGGGATCTCATCGACCACCTATTGGATTTAGATCCCGGCAAGAGACCGGGTGCTGGAGCTGAGGGTTATGCTTCTCTCAAGAGTCATCCCTTCTTTGAGGGGGTTGATTGGAAGAACATAAGAGCACAAACCCCTCCTAGGCTTGCTTTAGAAGCAGTGCCCCATTCAAATGAGAACGAGGATGGCTCTGAGTCCTCTTGGAATCCTTCACATATCGGAGATGGTGCACCGAGACAAAATGATGGGAATGCTGGTTCTGCATCAACTTCCGAAGGATCACATCATATTACTCGGCTCGCATCGATAGACTCCTTCGATTCAAAATGGCAACAATTCCTTGAACCTGGAGAATCTGTTCTTATGATCTCAATGGTGAAGAAACTTCAGAAACTAACAAGCAAAAAGGTTCAGCTCATCCTCACCAACAAACCAAAGTTGATTTATGTTGATCCTTCAAAGCTCATTGTCAAGGGGAATATCATTTGGTCTGATAATCCTAATGACCTCAACATTCAAGTGATTAGTCCTTCACACTTCAAGATTTGCACACCAAAAAAGATTGCCTCTTTCGAGGATGCGAAACAGCGAGCCTGGCAATGGAAGAAGGCGATCGAGGGGCTTCAGAACCGGTGA 1470 43.74 MLAMEKDFDAKLMIQGNASNGGNVQRSKSFAFRAPQENFTIQDFELGKIYGVGSYSKVVRAKKKDTGMVYALKIMDKKFITKENKTAYVKLERIVLDQLDHPGVVRLFFTFQDTFSLYMALESCEGGELFDQITRKGRLSEDEARFYAAEVVDALEYIHNMGLIHRDIKPENLLLTTDGHIKIADFGSVKPMVDSRITVLPNAASDDKACTFVGTAAYVPPEVLNSSPATFGNDLWALGCTVYQMLSGTSPFKDASEWLIFQKIVARDIKFPSYFSEQARDLIDHLLDLDPGKRPGAGAEGYASLKSHPFFEGVDWKNIRAQTPPRLALEAVPHSNENEDGSESSWNPSHIGDGAPRQNDGNAGSASTSEGSHHITRLASIDSFDSKWQQFLEPGESVLMISMVKKLQKLTSKKVQLILTNKPKLIYVDPSKLIVKGNIIWSDNPNDLNIQVISPSHFKICTPKKIASFEDAKQRAWQWKKAIEGLQNR 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4886706 4892473 - Lag0040444.1 Lac13g0648 591804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0648 489 SUPERFAMILY Protein kinase-like (PK-like) 41 359 IPR011009 -
Lac13g0648 489 FunFam 3-phosphoinositide-dependent protein kinase 2-like 128 326 - -
Lac13g0648 489 FunFam 3-phosphoinositide-dependent protein kinase 2-like 42 127 - -
Lac13g0648 489 MobiDBLite consensus disorder prediction 333 372 - -
Lac13g0648 489 FunFam 3-phosphoinositide-dependent protein kinase 1 359 489 - -
Lac13g0648 489 ProSiteProfiles Protein kinase domain profile. 44 311 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac13g0648 489 Pfam Protein kinase domain 45 311 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac13g0648 489 Pfam PH domain 386 488 IPR033931 -
Lac13g0648 489 SMART serkin_6 44 311 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac13g0648 489 Gene3D - 358 489 IPR011993 -
Lac13g0648 489 Gene3D Transferase(Phosphotransferase) domain 1 128 323 - -
Lac13g0648 489 MobiDBLite consensus disorder prediction 338 352 - -
Lac13g0648 489 CDD STKc_PDK1 42 311 IPR039046 GO:0004674(InterPro)
Lac13g0648 489 Gene3D Phosphorylase Kinase; domain 1 42 127 - -
Lac13g0648 489 Coils Coil 469 489 - -
Lac13g0648 489 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac13g0648 489 PANTHER SERINE/THREONINE-PROTEIN KINASE 29 338 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Lac13g0648 489 SUPERFAMILY PH domain-like 305 488 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0648 Lac-Chr13:4886706 Lac3g0658 Lac-Chr3:5116600 3.10E-55 dispersed
Lac3g0522 Lac-Chr3:3999525 Lac13g0648 Lac-Chr13:4886706 6.40E-07 dispersed
Lac13g0648 Lac-Chr13:4886706 Lac9g1924 Lac-Chr9:39021580 1.10E-47 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85856 PF00069 Pkinase 1.10E-65 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0648 K06276 - csv:101212874 940.258