Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0672 ATGTTTCCTGTTCTTAGCATTCTCTTGATATGGATGTCTGGATCAATCTTTCTTGTCGCCTCGGCTTCCTTCAATCTGACATTGCCCCATCAGCATCCTGACCCTGATTCTGTTGCTGATGAACTCCAAAGGAGAGTCAATGCATCTGTATGGAGAAGACAAATGCTATCCTTCGAATCGAAGGATCAAGCTTTCTCTTGCCTCACCGGAAACCCCATCGACGATTGCTGGCGCTGCGACCCAAATTGGGCGGCGAACCGGCAGAGACTCGCCGACTGCGGCATCGGCTTCGGCCGCGATGCCGTCGGCGGCAAAGGCGGCAAGATCTACATCGTAGCCGACTCGTCCGATGCCGATCCGGCGAACCCAACTCCGGGCACCCTCCGCCACGCCGTGATCCAATTTGAGCCCCTTTGGATCATCTTCTCGGCGGATATGACCATTAGGCTGAAGCATGAACTCATCATCAATAGCTTCAAAACGATCGATGGCCGTGGCGCCAACGTCCACATCACCGGCGGCGGTTGCATCACTATTCAATACGTGTCCAACATCATCATCCACAACATCCACGTGCACCACTGTAAACCCTCCGGCAATGCCAACATAAGGTCAACCCCGACCCACGTAGGGCATCGGGGGCTCTCGGACGGGGACGGGATCTCGATATTCAGCTCTAGAAAGATCTGGATCGACCACTGCTCACTTTCATACTGCACAGACGGGCTGATAGACGCGATAATGGGGTCGACAGGGATAACAATATCGAACAGCTACTTCTCGCACCACGACGAGGTGATGCTGCTGGGGCACGACGACCGGTACGTGCAGGACTCGGGCATGCAGGTGACCATTGCCTTCAACCACTTCGGCGAGGCTCTGGTCCAGCGCATGCCCAGGTGCAGACATGGCTACATCCATGTGGTCAACAATGACTTCACGGCTTGGGAAATGTACGCCATTGGCGGCAGTGCTCGACCCACTATTAACAGCCAGGGCAACCGCTATACGGCTCCTGTGGACCCCAATGCCAAAGAGGTGACGAGACGTTTAGACGCGGCGGAGACGGAGTGGGCGGGGTGGAATTGGCGGACGGACGGCGATATTTTGGTGAACGGAGCGTTTTTTGTGCCGTCCGGCGCCGGACTCAGCACCCAGTACGGTAAAGCATCCAGCGTTGAGCCTAAGTCGGTGGCGCTTATCAATCAACTCACTATGAACGCCGGCGTCTTGGGCGCCCCCAGGTATAATCCTGGTGAAGGGATTGTATATCCAGGATTCAGTGGTAGTAACGGTGGATATGGTGGTAATAATGTCATCAATAATAGTCCGATATATGGAAATGGTGGTGGTGGTGGTAGTGATGATGATTTCTACGGAATGATATTTAAAGCTGGCAGCTATAGAGTATCACCATTTTCCTTGATAAACTTATGTATTCAAATTATAGTAGTTTTGTATATAGTCACAAATTATAGTGGTCTATTGACATTATTATAG 1500 52.33 MFPVLSILLIWMSGSIFLVASASFNLTLPHQHPDPDSVADELQRRVNASVWRRQMLSFESKDQAFSCLTGNPIDDCWRCDPNWAANRQRLADCGIGFGRDAVGGKGGKIYIVADSSDADPANPTPGTLRHAVIQFEPLWIIFSADMTIRLKHELIINSFKTIDGRGANVHITGGGCITIQYVSNIIIHNIHVHHCKPSGNANIRSTPTHVGHRGLSDGDGISIFSSRKIWIDHCSLSYCTDGLIDAIMGSTGITISNSYFSHHDEVMLLGHDDRYVQDSGMQVTIAFNHFGEALVQRMPRCRHGYIHVVNNDFTAWEMYAIGGSARPTINSQGNRYTAPVDPNAKEVTRRLDAAETEWAGWNWRTDGDILVNGAFFVPSGAGLSTQYGKASSVEPKSVALINQLTMNAGVLGAPRYNPGEGIVYPGFSGSNGGYGGNNVINNSPIYGNGGGGGSDDDFYGMIFKAGSYRVSPFSLINLCIQIIVVLYIVTNYSGLLTLL 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5111088 5117864 + Lag0040468.1 Lac13g0672 591828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0672 499 Gene3D - 70 412 IPR012334 -
Lac13g0672 499 SMART amb_all 145 342 IPR002022 -
Lac13g0672 499 Pfam Pectate lyase 152 331 IPR002022 -
Lac13g0672 499 PRINTS Pollen allergen Amb family signature 117 142 IPR018082 -
Lac13g0672 499 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Lac13g0672 499 PRINTS Pollen allergen Amb family signature 153 169 IPR018082 -
Lac13g0672 499 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Lac13g0672 499 PRINTS Pollen allergen Amb family signature 390 413 IPR018082 -
Lac13g0672 499 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Lac13g0672 499 PRINTS Pollen allergen Amb family signature 361 385 IPR018082 -
Lac13g0672 499 PRINTS Pollen allergen Amb family signature 217 238 IPR018082 -
Lac13g0672 499 FunFam Pectate lyase 70 412 - -
Lac13g0672 499 PANTHER PECTATE LYASE 18-RELATED 17 413 IPR045032 GO:0030570(InterPro)
Lac13g0672 499 SUPERFAMILY Pectin lyase-like 61 389 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0672 Lac-Chr13:5111088 Lac1g2192 Lac-Chr1:43364350 1.20E-182 dispersed
Lac1g2071 Lac-Chr1:42235155 Lac13g0672 Lac-Chr13:5111088 4.80E-40 transposed
Lac13g0672 Lac-Chr13:5111088 Lac8g2372 Lac-Chr8:41832794 1.70E-189 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0672 K01728 - csv:101205739 872.078