Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac13g0683 | ATGGGTCCGTCGGAGAAGGACCTGAAAGACACGGTGGTGAGTCAACTGGCCGAGTCTGTGAAGGAGATTTCTCTTCTTCCTGAGTGTAACGGCATCTGTAAGAAGATGTATGGGGATTTGATTCGAAGGGTCAAGCTCTTAAGCCCTCTGTTTGAGGAATTGAGAGATGGAGAAGAAGAAGAACTTGGATTAGATGTTCTTAAGGGCTTGGAGTTGCTGAAAATTGCTCTGGATTCTGCTACAGAGCTTCTTAGGTCGGTCAGCCGTGGTAGCAAGCTATTTCAGGCTTCGCAGTTGGAGAAGATAGTACTTGAGTTTCATCATATGACAGAAGATATTGAAGCAGCACTCAGCAAGCTTCCCATTGACAAGCTCGGGATCTCGGATGAGGTTCGAGAACAGACTGAACTAGTTCATGCCCAATTCAAACGAGCGAAAGAGAGAGTAGGTTCAGTTGATGCACAGTTAGACAAGGATTTAGCCATATTAGAGGAAGAGAAAGATCCTGACCCTGCAATATTGAAAAGACTTTCTGAAAAGTTGCATCTTAGAACAATCAATGATCTGAAGAAAGAGTCACTAGCAATACATGAGCTGGTGATCTCGAGCGAGGGAGATCCGGAGAATATTTTTGGAAAGATGTCGTCCATTTTAAAGAAGCTGAAGGATTTTGTACAATTGGAAAACCCAGAAGTTGAAACTTCTCAAGACGAAAAGAGTACAACCATTAAACACAGATCTCCTGTCATCCCGGACGATTTCAGGTGCCCCATATCTCTTGAATTGATGAGGGATCCCGTGATCGTCTCCACCGGGCAGACTTATGAGAGATCTTGCATTCAGAAATGGTTGGATGCAGGACACAAAACCTGTCCAAAAACTCAGCAGGCTTTACTACATACAGCCTTAACACCAAATTACGTTTTGAAGAGCCTGATTGCTTTGTGGTGTGAGAACAATGGCGTTGAACTGCCAAGAAAGCAAGGTAGCTGTAGAAACAAGAAACCTGGAAGCAGTATCTCAGACTGCGATCGGGCAGCCATCGATGCCTTACTGTTAAAACTGGTAAATGGATCTCCAGAACAGAAACGATCAGCTGCAGGTGAGTTCCGACTACTAGCGAAGAGGAATTCAGATAACAGAATTTGTATCGCCGAGGCAGGAGCCATTCCGTTCCTTGTCGAACTATTATCCTCAAATGATACCAGGACCCAGGAGCATGCAGTTACAGCACTATTGAATCTTTCAATCAACGACAGTAACAAAAGAACGATTGTCGATCTACGAGCCATACCCGCTATAGTAGAAGTGTTGAAAAATGGCAGCATGGAGGCAAGGGAAAATGCAGCTGCAACCCTTTTCAGCTTATCCGTTATAGACGAGAACAAGGTCGCAATCGGAGCAGCCGGGGCAATCCCCGCTCTCATAAGTTTGCTTTGCGAAGGAACACCCAGAGGAAAGAAGGATGCTGCCACTGCTATCTTCAACCTTTCAATCTACCAGGGAAACAAAGCTAGGGCTGTGAGAGCAGGCATTGTGACTCCACTCATGGGATTTCTGAAAGATGCTGGAGGTGGCATGGTGGATGAAGCTCTAGCCATTCTGGCCATTCTTGCAACTCACCATGAAGGAAAGACAGCAATAGGGCAAGCCGAGCCGATGGCGGTTCTATTGGAGTTCATCAGAACCGGATCTCCACGGAACCGGGAAAACGCTGCTGCCGTGCTGTGGTCGCTTTGCAGTACTGATTTCAAGCAGTTGAAGCTAGCTAGGGAACATGGTGCAGAAGAGGCATTGAAAGAAGTATCTGAAAATGGCACAGATAGAGCAAAGAGGAAAGCAGGAAGCATTCTAGAGCTCTTTCAACGACTTGATGGGCCATCTGCCAATCTATAA | 1896 | 45.94 | MGPSEKDLKDTVVSQLAESVKEISLLPECNGICKKMYGDLIRRVKLLSPLFEELRDGEEEELGLDVLKGLELLKIALDSATELLRSVSRGSKLFQASQLEKIVLEFHHMTEDIEAALSKLPIDKLGISDEVREQTELVHAQFKRAKERVGSVDAQLDKDLAILEEEKDPDPAILKRLSEKLHLRTINDLKKESLAIHELVISSEGDPENIFGKMSSILKKLKDFVQLENPEVETSQDEKSTTIKHRSPVIPDDFRCPISLELMRDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQALLHTALTPNYVLKSLIALWCENNGVELPRKQGSCRNKKPGSSISDCDRAAIDALLLKLVNGSPEQKRSAAGEFRLLAKRNSDNRICIAEAGAIPFLVELLSSNDTRTQEHAVTALLNLSINDSNKRTIVDLRAIPAIVEVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALISLLCEGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVTPLMGFLKDAGGGMVDEALAILAILATHHEGKTAIGQAEPMAVLLEFIRTGSPRNRENAAAVLWSLCSTDFKQLKLAREHGAEEALKEVSENGTDRAKRKAGSILELFQRLDGPSANL | 631 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 5210399 | 5213048 | - | Lag0040479.1 | Lac13g0683 | 591839 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac13g0683 | 631 | FunFam | RING-type E3 ubiquitin transferase | 250 | 323 | - | - | |
Lac13g0683 | 631 | FunFam | RING-type E3 ubiquitin transferase | 333 | 626 | - | - | |
Lac13g0683 | 631 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 429 | 471 | IPR000225 | GO:0005515(InterPro) | |
Lac13g0683 | 631 | ProSiteProfiles | U-box domain profile. | 249 | 323 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Lac13g0683 | 631 | Pfam | U-box domain | 250 | 320 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Lac13g0683 | 631 | Gene3D | - | 338 | 461 | IPR011989 | - | |
Lac13g0683 | 631 | SUPERFAMILY | RING/U-box | 247 | 324 | - | - | |
Lac13g0683 | 631 | FunFam | RING-type E3 ubiquitin transferase | 9 | 123 | - | - | |
Lac13g0683 | 631 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 388 | 430 | IPR000225 | GO:0005515(InterPro) | |
Lac13g0683 | 631 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 248 | 323 | IPR013083 | - | |
Lac13g0683 | 631 | SMART | arm_5 | 541 | 581 | IPR000225 | GO:0005515(InterPro) | |
Lac13g0683 | 631 | SMART | arm_5 | 377 | 417 | IPR000225 | GO:0005515(InterPro) | |
Lac13g0683 | 631 | SMART | arm_5 | 418 | 458 | IPR000225 | GO:0005515(InterPro) | |
Lac13g0683 | 631 | SMART | arm_5 | 459 | 499 | IPR000225 | GO:0005515(InterPro) | |
Lac13g0683 | 631 | SMART | arm_5 | 500 | 540 | IPR000225 | GO:0005515(InterPro) | |
Lac13g0683 | 631 | Gene3D | - | 462 | 623 | IPR011989 | - | |
Lac13g0683 | 631 | SMART | Ubox_2 | 253 | 316 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Lac13g0683 | 631 | PANTHER | U BOX DOMAIN-CONTAINING | 34 | 624 | - | - | |
Lac13g0683 | 631 | Pfam | Armadillo/beta-catenin-like repeat | 418 | 457 | IPR000225 | GO:0005515(InterPro) | |
Lac13g0683 | 631 | Pfam | Armadillo/beta-catenin-like repeat | 377 | 416 | IPR000225 | GO:0005515(InterPro) | |
Lac13g0683 | 631 | Pfam | Armadillo/beta-catenin-like repeat | 460 | 498 | IPR000225 | GO:0005515(InterPro) | |
Lac13g0683 | 631 | CDD | RING-Ubox_PUB | 251 | 303 | IPR045210 | - | |
Lac13g0683 | 631 | Gene3D | - | 11 | 123 | IPR036537 | GO:0007166(InterPro) | |
Lac13g0683 | 631 | SUPERFAMILY | ARM repeat | 347 | 620 | IPR016024 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac13g0683 | Lac-Chr13:5210399 | Lac9g2481 | Lac-Chr9:43655656 | 3.80E-98 | dispersed | |
Lac13g0683 | Lac-Chr13:5210399 | Lac7g2706 | Lac-Chr7:46146918 | 1.30E-119 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac13g0683 | K27628 | - | csv:101221065 | 1077.39 |