Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0683 ATGGGTCCGTCGGAGAAGGACCTGAAAGACACGGTGGTGAGTCAACTGGCCGAGTCTGTGAAGGAGATTTCTCTTCTTCCTGAGTGTAACGGCATCTGTAAGAAGATGTATGGGGATTTGATTCGAAGGGTCAAGCTCTTAAGCCCTCTGTTTGAGGAATTGAGAGATGGAGAAGAAGAAGAACTTGGATTAGATGTTCTTAAGGGCTTGGAGTTGCTGAAAATTGCTCTGGATTCTGCTACAGAGCTTCTTAGGTCGGTCAGCCGTGGTAGCAAGCTATTTCAGGCTTCGCAGTTGGAGAAGATAGTACTTGAGTTTCATCATATGACAGAAGATATTGAAGCAGCACTCAGCAAGCTTCCCATTGACAAGCTCGGGATCTCGGATGAGGTTCGAGAACAGACTGAACTAGTTCATGCCCAATTCAAACGAGCGAAAGAGAGAGTAGGTTCAGTTGATGCACAGTTAGACAAGGATTTAGCCATATTAGAGGAAGAGAAAGATCCTGACCCTGCAATATTGAAAAGACTTTCTGAAAAGTTGCATCTTAGAACAATCAATGATCTGAAGAAAGAGTCACTAGCAATACATGAGCTGGTGATCTCGAGCGAGGGAGATCCGGAGAATATTTTTGGAAAGATGTCGTCCATTTTAAAGAAGCTGAAGGATTTTGTACAATTGGAAAACCCAGAAGTTGAAACTTCTCAAGACGAAAAGAGTACAACCATTAAACACAGATCTCCTGTCATCCCGGACGATTTCAGGTGCCCCATATCTCTTGAATTGATGAGGGATCCCGTGATCGTCTCCACCGGGCAGACTTATGAGAGATCTTGCATTCAGAAATGGTTGGATGCAGGACACAAAACCTGTCCAAAAACTCAGCAGGCTTTACTACATACAGCCTTAACACCAAATTACGTTTTGAAGAGCCTGATTGCTTTGTGGTGTGAGAACAATGGCGTTGAACTGCCAAGAAAGCAAGGTAGCTGTAGAAACAAGAAACCTGGAAGCAGTATCTCAGACTGCGATCGGGCAGCCATCGATGCCTTACTGTTAAAACTGGTAAATGGATCTCCAGAACAGAAACGATCAGCTGCAGGTGAGTTCCGACTACTAGCGAAGAGGAATTCAGATAACAGAATTTGTATCGCCGAGGCAGGAGCCATTCCGTTCCTTGTCGAACTATTATCCTCAAATGATACCAGGACCCAGGAGCATGCAGTTACAGCACTATTGAATCTTTCAATCAACGACAGTAACAAAAGAACGATTGTCGATCTACGAGCCATACCCGCTATAGTAGAAGTGTTGAAAAATGGCAGCATGGAGGCAAGGGAAAATGCAGCTGCAACCCTTTTCAGCTTATCCGTTATAGACGAGAACAAGGTCGCAATCGGAGCAGCCGGGGCAATCCCCGCTCTCATAAGTTTGCTTTGCGAAGGAACACCCAGAGGAAAGAAGGATGCTGCCACTGCTATCTTCAACCTTTCAATCTACCAGGGAAACAAAGCTAGGGCTGTGAGAGCAGGCATTGTGACTCCACTCATGGGATTTCTGAAAGATGCTGGAGGTGGCATGGTGGATGAAGCTCTAGCCATTCTGGCCATTCTTGCAACTCACCATGAAGGAAAGACAGCAATAGGGCAAGCCGAGCCGATGGCGGTTCTATTGGAGTTCATCAGAACCGGATCTCCACGGAACCGGGAAAACGCTGCTGCCGTGCTGTGGTCGCTTTGCAGTACTGATTTCAAGCAGTTGAAGCTAGCTAGGGAACATGGTGCAGAAGAGGCATTGAAAGAAGTATCTGAAAATGGCACAGATAGAGCAAAGAGGAAAGCAGGAAGCATTCTAGAGCTCTTTCAACGACTTGATGGGCCATCTGCCAATCTATAA 1896 45.94 MGPSEKDLKDTVVSQLAESVKEISLLPECNGICKKMYGDLIRRVKLLSPLFEELRDGEEEELGLDVLKGLELLKIALDSATELLRSVSRGSKLFQASQLEKIVLEFHHMTEDIEAALSKLPIDKLGISDEVREQTELVHAQFKRAKERVGSVDAQLDKDLAILEEEKDPDPAILKRLSEKLHLRTINDLKKESLAIHELVISSEGDPENIFGKMSSILKKLKDFVQLENPEVETSQDEKSTTIKHRSPVIPDDFRCPISLELMRDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQALLHTALTPNYVLKSLIALWCENNGVELPRKQGSCRNKKPGSSISDCDRAAIDALLLKLVNGSPEQKRSAAGEFRLLAKRNSDNRICIAEAGAIPFLVELLSSNDTRTQEHAVTALLNLSINDSNKRTIVDLRAIPAIVEVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALISLLCEGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVTPLMGFLKDAGGGMVDEALAILAILATHHEGKTAIGQAEPMAVLLEFIRTGSPRNRENAAAVLWSLCSTDFKQLKLAREHGAEEALKEVSENGTDRAKRKAGSILELFQRLDGPSANL 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5210399 5213048 - Lag0040479.1 Lac13g0683 591839

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0683 631 FunFam RING-type E3 ubiquitin transferase 250 323 - -
Lac13g0683 631 FunFam RING-type E3 ubiquitin transferase 333 626 - -
Lac13g0683 631 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 429 471 IPR000225 GO:0005515(InterPro)
Lac13g0683 631 ProSiteProfiles U-box domain profile. 249 323 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac13g0683 631 Pfam U-box domain 250 320 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac13g0683 631 Gene3D - 338 461 IPR011989 -
Lac13g0683 631 SUPERFAMILY RING/U-box 247 324 - -
Lac13g0683 631 FunFam RING-type E3 ubiquitin transferase 9 123 - -
Lac13g0683 631 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 388 430 IPR000225 GO:0005515(InterPro)
Lac13g0683 631 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 323 IPR013083 -
Lac13g0683 631 SMART arm_5 541 581 IPR000225 GO:0005515(InterPro)
Lac13g0683 631 SMART arm_5 377 417 IPR000225 GO:0005515(InterPro)
Lac13g0683 631 SMART arm_5 418 458 IPR000225 GO:0005515(InterPro)
Lac13g0683 631 SMART arm_5 459 499 IPR000225 GO:0005515(InterPro)
Lac13g0683 631 SMART arm_5 500 540 IPR000225 GO:0005515(InterPro)
Lac13g0683 631 Gene3D - 462 623 IPR011989 -
Lac13g0683 631 SMART Ubox_2 253 316 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac13g0683 631 PANTHER U BOX DOMAIN-CONTAINING 34 624 - -
Lac13g0683 631 Pfam Armadillo/beta-catenin-like repeat 418 457 IPR000225 GO:0005515(InterPro)
Lac13g0683 631 Pfam Armadillo/beta-catenin-like repeat 377 416 IPR000225 GO:0005515(InterPro)
Lac13g0683 631 Pfam Armadillo/beta-catenin-like repeat 460 498 IPR000225 GO:0005515(InterPro)
Lac13g0683 631 CDD RING-Ubox_PUB 251 303 IPR045210 -
Lac13g0683 631 Gene3D - 11 123 IPR036537 GO:0007166(InterPro)
Lac13g0683 631 SUPERFAMILY ARM repeat 347 620 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0683 K27628 - - csv:101221065 1077.39
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0683 Lac-Chr13:5210399 Lac9g2481 Lac-Chr9:43655656 3.80E-98 dispersed
Lac13g0683 Lac-Chr13:5210399 Lac7g2706 Lac-Chr7:46146918 1.30E-119 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac8g0902 . 1 1040 U-box Gene Family AT5G15400 77.0 0.0e+00 1593.9
Lac9g1195 . 196 837 U-box Gene Family AT2G23140 65.9 2.5e-121 433.7
Lac6g0745 . 1 773 U-box Gene Family AT1G24330 59.6 9.6e-245 844.0
Lac13g0067 . 1 586 U-box Gene Family AT1G24330 66.6 6.7e-214 741.5
Lac6g0745 . 1 772 U-box Gene Family AT1G67530 60.0 5.4e-243 838.2
Lac13g0067 . 1 586 U-box Gene Family AT1G67530 66.3 6.6e-209 724.9
Lac1g3266 . 1 362 U-box Gene Family AT4G21350 63.4 8.5e-122 434.5
Lac13g1443 . 260 455 U-box Gene Family AT1G71020 68.7 7.2e-73 272.3
Lac8g1555 . 271 469 U-box Gene Family AT1G71020 53.7 4.8e-53 206.5
Lac13g0683 . 214 417 U-box Gene Family AT1G71020 53.1 9.5e-49 192.2
Lac7g2706 . 258 427 U-box Gene Family AT1G71020 57.8 1.4e-47 188.3
Lac9g2481 . 256 405 U-box Gene Family AT1G71020 56.1 8.6e-42 169.1
Lac13g1443 . 16 659 U-box Gene Family AT1G23030 57.0 7.2e-110 395.6
Lac7g2706 . 93 632 U-box Gene Family AT2G28830 59.9 8.9e-102 368.6
Lac9g2481 . 93 409 U-box Gene Family AT2G28830 52.6 4.3e-80 296.6
Lac7g2706 . 1 634 U-box Gene Family AT3G46510 70.3 2.5e-169 593.2
Lac9g2481 . 3 407 U-box Gene Family AT3G46510 58.8 4.2e-124 443.0
Lac13g0683 . 9 624 U-box Gene Family AT3G46510 58.9 8.8e-122 435.3
Lac13g0683 . 1 626 U-box Gene Family AT3G54850 68.9 5.1e-167 585.5
Lac7g2706 . 8 627 U-box Gene Family AT3G54850 55.6 8.8e-103 372.1
Lac9g1894 . 97 649 U-box Gene Family AT5G42340 65.1 3.8e-125 446.4
Lac1g1790 . 9 672 U-box Gene Family AT5G01830 56.5 4.0e-194 675.6
Lac10g0984 . 1 714 U-box Gene Family AT1G29340 64.4 1.0e-251 867.1
Lac11g0229 . 27 442 U-box Gene Family AT5G37490 50.8 1.1e-109 394.4
Lac1g1729 . 10 421 U-box Gene Family AT3G52450 53.5 3.5e-119 426.0
Lac10g2755 . 2 407 U-box Gene Family AT3G52450 50.1 2.5e-117 419.9
Lac3g1540 . 3 135 U-box Gene Family AT3G52450 60.9 2.3e-41 167.5
Lac10g2755 . 2 406 U-box Gene Family AT2G35930 52.7 1.3e-118 424.1
Lac9g2738 . 5 406 U-box Gene Family AT2G35930 52.1 6.3e-118 421.8
Lac1g1729 . 9 421 U-box Gene Family AT2G35930 50.8 5.5e-114 408.7
Lac3g1540 . 3 135 U-box Gene Family AT2G35930 57.9 8.1e-41 165.6
Lac5g2555 . 7 428 U-box Gene Family AT3G19380 63.9 8.6e-147 517.7
Lac5g2555 . 1 428 U-box Gene Family AT1G49780 63.4 1.4e-149 526.9
Lac1g2397 . 1 411 U-box Gene Family AT5G64660 53.8 9.0e-120 427.9
Lac1g2397 . 1 411 U-box Gene Family AT5G09800 51.1 6.7e-104 375.2
Lac2g0412 . 1 453 U-box Gene Family AT3G49810 65.1 1.6e-159 560.1
Lac6g0235 . 1 452 U-box Gene Family AT3G49810 63.3 3.5e-154 542.3
Lac2g0412 . 1 453 U-box Gene Family AT5G65920 63.8 7.7e-154 541.2
Lac6g0235 . 1 452 U-box Gene Family AT5G65920 63.8 1.1e-152 537.3
Lac7g0234 . 1 875 U-box Gene Family AT2G45910 52.1 1.4e-233 807.0
Lac6g3081 . 4 726 U-box Gene Family AT2G19410 51.1 2.8e-215 746.1
Lac11g1756 . 25 808 U-box Gene Family AT4G25160 54.9 4.9e-226 781.9
Lac8g2617 . 39 549 U-box Gene Family AT5G40140 56.0 2.6e-95 347.1
Lac3g0670 . 28 541 U-box Gene Family AT5G40140 50.7 1.5e-69 261.5
Lac10g0421 . 29 494 U-box Gene Family AT5G40140 50.9 1.0e-54 212.2
Lac6g0084 . 45 853 U-box Gene Family AT1G76390 62.2 8.5e-276 947.2
Lac6g0084 . 54 853 U-box Gene Family AT1G20780 62.5 5.1e-281 964.5
Lac6g0745 . 1 775 U-box Gene Family AT1G27910 63.2 3.3e-269 925.2
Lac13g0067 . 1 767 U-box Gene Family AT1G27910 54.4 6.7e-214 741.5
Lac1g2663 . 1 593 U-box Gene Family AT5G67530 75.9 1.6e-263 906.0
Lac7g0310 . 3 157 U-box Gene Family AT5G67530 53.5 2.7e-45 181.0
Lac10g2836 . 12 156 U-box Gene Family AT5G67530 50.3 2.5e-38 157.9
Lac1g2774 . 65 860 U-box Gene Family AT5G65500 50.9 2.6e-213 739.6
Lac7g0542 . 1 516 U-box Gene Family AT1G04510 75.0 1.1e-223 773.5
Lac7g0542 . 1 485 U-box Gene Family AT2G33340 73.9 1.1e-209 726.9
Lac11g2492 . 5 278 U-box Gene Family AT3G07370 65.7 7.3e-102 367.9
Lac8g0902 . 1 1040 U-box Gene Family AT5G15400 77.0 0.0e+00 1593.9
Lac9g1195 . 196 837 U-box Gene Family AT2G23140 65.9 2.5e-121 433.7
Lac6g0745 . 1 773 U-box Gene Family AT1G24330 59.6 9.6e-245 844.0
Lac13g0067 . 1 586 U-box Gene Family AT1G24330 66.6 6.7e-214 741.5
Lac6g0745 . 1 772 U-box Gene Family AT1G67530 60.0 5.4e-243 838.2
Lac13g0067 . 1 586 U-box Gene Family AT1G67530 66.3 6.6e-209 724.9
Lac1g3266 . 1 362 U-box Gene Family AT4G21350 63.4 8.5e-122 434.5
Lac13g1443 . 260 455 U-box Gene Family AT1G71020 68.7 7.2e-73 272.3
Lac8g1555 . 271 469 U-box Gene Family AT1G71020 53.7 4.8e-53 206.5
Lac13g0683 . 214 417 U-box Gene Family AT1G71020 53.1 9.5e-49 192.2
Lac7g2706 . 258 427 U-box Gene Family AT1G71020 57.8 1.4e-47 188.3
Lac9g2481 . 256 405 U-box Gene Family AT1G71020 56.1 8.6e-42 169.1
Lac13g1443 . 16 659 U-box Gene Family AT1G23030 57.0 7.2e-110 395.6
Lac7g2706 . 93 632 U-box Gene Family AT2G28830 59.9 8.9e-102 368.6
Lac9g2481 . 93 409 U-box Gene Family AT2G28830 52.6 4.3e-80 296.6
Lac7g2706 . 1 634 U-box Gene Family AT3G46510 70.3 2.5e-169 593.2
Lac9g2481 . 3 407 U-box Gene Family AT3G46510 58.8 4.2e-124 443.0
Lac13g0683 . 9 624 U-box Gene Family AT3G46510 58.9 8.8e-122 435.3
Lac13g0683 . 1 626 U-box Gene Family AT3G54850 68.9 5.1e-167 585.5
Lac7g2706 . 8 627 U-box Gene Family AT3G54850 55.6 8.8e-103 372.1
Lac9g1894 . 97 649 U-box Gene Family AT5G42340 65.1 3.8e-125 446.4
Lac1g1790 . 9 672 U-box Gene Family AT5G01830 56.5 4.0e-194 675.6
Lac10g0984 . 1 714 U-box Gene Family AT1G29340 64.4 1.0e-251 867.1
Lac11g0229 . 27 442 U-box Gene Family AT5G37490 50.8 1.1e-109 394.4
Lac1g1729 . 10 421 U-box Gene Family AT3G52450 53.5 3.5e-119 426.0
Lac10g2755 . 2 407 U-box Gene Family AT3G52450 50.1 2.5e-117 419.9
Lac3g1540 . 3 135 U-box Gene Family AT3G52450 60.9 2.3e-41 167.5
Lac10g2755 . 2 406 U-box Gene Family AT2G35930 52.7 1.3e-118 424.1
Lac9g2738 . 5 406 U-box Gene Family AT2G35930 52.1 6.3e-118 421.8
Lac1g1729 . 9 421 U-box Gene Family AT2G35930 50.8 5.5e-114 408.7
Lac3g1540 . 3 135 U-box Gene Family AT2G35930 57.9 8.1e-41 165.6
Lac5g2555 . 7 428 U-box Gene Family AT3G19380 63.9 8.6e-147 517.7
Lac5g2555 . 1 428 U-box Gene Family AT1G49780 63.4 1.4e-149 526.9
Lac1g2397 . 1 411 U-box Gene Family AT5G64660 53.8 9.0e-120 427.9
Lac1g2397 . 1 411 U-box Gene Family AT5G09800 51.1 6.7e-104 375.2
Lac2g0412 . 1 453 U-box Gene Family AT3G49810 65.1 1.6e-159 560.1
Lac6g0235 . 1 452 U-box Gene Family AT3G49810 63.3 3.5e-154 542.3
Lac2g0412 . 1 453 U-box Gene Family AT5G65920 63.8 7.7e-154 541.2
Lac6g0235 . 1 452 U-box Gene Family AT5G65920 63.8 1.1e-152 537.3
Lac7g0234 . 1 875 U-box Gene Family AT2G45910 52.1 1.4e-233 807.0
Lac6g3081 . 4 726 U-box Gene Family AT2G19410 51.1 2.8e-215 746.1
Lac11g1756 . 25 808 U-box Gene Family AT4G25160 54.9 4.9e-226 781.9
Lac8g2617 . 39 549 U-box Gene Family AT5G40140 56.0 2.6e-95 347.1
Lac3g0670 . 28 541 U-box Gene Family AT5G40140 50.7 1.5e-69 261.5
Lac10g0421 . 29 494 U-box Gene Family AT5G40140 50.9 1.0e-54 212.2
Lac6g0084 . 45 853 U-box Gene Family AT1G76390 62.2 8.5e-276 947.2
Lac6g0084 . 54 853 U-box Gene Family AT1G20780 62.5 5.1e-281 964.5
Lac6g0745 . 1 775 U-box Gene Family AT1G27910 63.2 3.3e-269 925.2
Lac13g0067 . 1 767 U-box Gene Family AT1G27910 54.4 6.7e-214 741.5
Lac1g2663 . 1 593 U-box Gene Family AT5G67530 75.9 1.6e-263 906.0
Lac7g0310 . 3 157 U-box Gene Family AT5G67530 53.5 2.7e-45 181.0
Lac10g2836 . 12 156 U-box Gene Family AT5G67530 50.3 2.5e-38 157.9
Lac1g2774 . 65 860 U-box Gene Family AT5G65500 50.9 2.6e-213 739.6
Lac7g0542 . 1 516 U-box Gene Family AT1G04510 75.0 1.1e-223 773.5
Lac7g0542 . 1 485 U-box Gene Family AT2G33340 73.9 1.1e-209 726.9
Lac11g2492 . 5 278 U-box Gene Family AT3G07370 65.7 7.3e-102 367.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010303 1 1 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 1 1 1 32