Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0683 ATGGGTCCGTCGGAGAAGGACCTGAAAGACACGGTGGTGAGTCAACTGGCCGAGTCTGTGAAGGAGATTTCTCTTCTTCCTGAGTGTAACGGCATCTGTAAGAAGATGTATGGGGATTTGATTCGAAGGGTCAAGCTCTTAAGCCCTCTGTTTGAGGAATTGAGAGATGGAGAAGAAGAAGAACTTGGATTAGATGTTCTTAAGGGCTTGGAGTTGCTGAAAATTGCTCTGGATTCTGCTACAGAGCTTCTTAGGTCGGTCAGCCGTGGTAGCAAGCTATTTCAGGCTTCGCAGTTGGAGAAGATAGTACTTGAGTTTCATCATATGACAGAAGATATTGAAGCAGCACTCAGCAAGCTTCCCATTGACAAGCTCGGGATCTCGGATGAGGTTCGAGAACAGACTGAACTAGTTCATGCCCAATTCAAACGAGCGAAAGAGAGAGTAGGTTCAGTTGATGCACAGTTAGACAAGGATTTAGCCATATTAGAGGAAGAGAAAGATCCTGACCCTGCAATATTGAAAAGACTTTCTGAAAAGTTGCATCTTAGAACAATCAATGATCTGAAGAAAGAGTCACTAGCAATACATGAGCTGGTGATCTCGAGCGAGGGAGATCCGGAGAATATTTTTGGAAAGATGTCGTCCATTTTAAAGAAGCTGAAGGATTTTGTACAATTGGAAAACCCAGAAGTTGAAACTTCTCAAGACGAAAAGAGTACAACCATTAAACACAGATCTCCTGTCATCCCGGACGATTTCAGGTGCCCCATATCTCTTGAATTGATGAGGGATCCCGTGATCGTCTCCACCGGGCAGACTTATGAGAGATCTTGCATTCAGAAATGGTTGGATGCAGGACACAAAACCTGTCCAAAAACTCAGCAGGCTTTACTACATACAGCCTTAACACCAAATTACGTTTTGAAGAGCCTGATTGCTTTGTGGTGTGAGAACAATGGCGTTGAACTGCCAAGAAAGCAAGGTAGCTGTAGAAACAAGAAACCTGGAAGCAGTATCTCAGACTGCGATCGGGCAGCCATCGATGCCTTACTGTTAAAACTGGTAAATGGATCTCCAGAACAGAAACGATCAGCTGCAGGTGAGTTCCGACTACTAGCGAAGAGGAATTCAGATAACAGAATTTGTATCGCCGAGGCAGGAGCCATTCCGTTCCTTGTCGAACTATTATCCTCAAATGATACCAGGACCCAGGAGCATGCAGTTACAGCACTATTGAATCTTTCAATCAACGACAGTAACAAAAGAACGATTGTCGATCTACGAGCCATACCCGCTATAGTAGAAGTGTTGAAAAATGGCAGCATGGAGGCAAGGGAAAATGCAGCTGCAACCCTTTTCAGCTTATCCGTTATAGACGAGAACAAGGTCGCAATCGGAGCAGCCGGGGCAATCCCCGCTCTCATAAGTTTGCTTTGCGAAGGAACACCCAGAGGAAAGAAGGATGCTGCCACTGCTATCTTCAACCTTTCAATCTACCAGGGAAACAAAGCTAGGGCTGTGAGAGCAGGCATTGTGACTCCACTCATGGGATTTCTGAAAGATGCTGGAGGTGGCATGGTGGATGAAGCTCTAGCCATTCTGGCCATTCTTGCAACTCACCATGAAGGAAAGACAGCAATAGGGCAAGCCGAGCCGATGGCGGTTCTATTGGAGTTCATCAGAACCGGATCTCCACGGAACCGGGAAAACGCTGCTGCCGTGCTGTGGTCGCTTTGCAGTACTGATTTCAAGCAGTTGAAGCTAGCTAGGGAACATGGTGCAGAAGAGGCATTGAAAGAAGTATCTGAAAATGGCACAGATAGAGCAAAGAGGAAAGCAGGAAGCATTCTAGAGCTCTTTCAACGACTTGATGGGCCATCTGCCAATCTATAA 1896 45.94 MGPSEKDLKDTVVSQLAESVKEISLLPECNGICKKMYGDLIRRVKLLSPLFEELRDGEEEELGLDVLKGLELLKIALDSATELLRSVSRGSKLFQASQLEKIVLEFHHMTEDIEAALSKLPIDKLGISDEVREQTELVHAQFKRAKERVGSVDAQLDKDLAILEEEKDPDPAILKRLSEKLHLRTINDLKKESLAIHELVISSEGDPENIFGKMSSILKKLKDFVQLENPEVETSQDEKSTTIKHRSPVIPDDFRCPISLELMRDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQALLHTALTPNYVLKSLIALWCENNGVELPRKQGSCRNKKPGSSISDCDRAAIDALLLKLVNGSPEQKRSAAGEFRLLAKRNSDNRICIAEAGAIPFLVELLSSNDTRTQEHAVTALLNLSINDSNKRTIVDLRAIPAIVEVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALISLLCEGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVTPLMGFLKDAGGGMVDEALAILAILATHHEGKTAIGQAEPMAVLLEFIRTGSPRNRENAAAVLWSLCSTDFKQLKLAREHGAEEALKEVSENGTDRAKRKAGSILELFQRLDGPSANL 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5210399 5213048 - Lag0040479.1 Lac13g0683 591839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0683 631 FunFam RING-type E3 ubiquitin transferase 250 323 - -
Lac13g0683 631 FunFam RING-type E3 ubiquitin transferase 333 626 - -
Lac13g0683 631 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 429 471 IPR000225 GO:0005515(InterPro)
Lac13g0683 631 ProSiteProfiles U-box domain profile. 249 323 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac13g0683 631 Pfam U-box domain 250 320 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac13g0683 631 Gene3D - 338 461 IPR011989 -
Lac13g0683 631 SUPERFAMILY RING/U-box 247 324 - -
Lac13g0683 631 FunFam RING-type E3 ubiquitin transferase 9 123 - -
Lac13g0683 631 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 388 430 IPR000225 GO:0005515(InterPro)
Lac13g0683 631 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 323 IPR013083 -
Lac13g0683 631 SMART arm_5 541 581 IPR000225 GO:0005515(InterPro)
Lac13g0683 631 SMART arm_5 377 417 IPR000225 GO:0005515(InterPro)
Lac13g0683 631 SMART arm_5 418 458 IPR000225 GO:0005515(InterPro)
Lac13g0683 631 SMART arm_5 459 499 IPR000225 GO:0005515(InterPro)
Lac13g0683 631 SMART arm_5 500 540 IPR000225 GO:0005515(InterPro)
Lac13g0683 631 Gene3D - 462 623 IPR011989 -
Lac13g0683 631 SMART Ubox_2 253 316 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac13g0683 631 PANTHER U BOX DOMAIN-CONTAINING 34 624 - -
Lac13g0683 631 Pfam Armadillo/beta-catenin-like repeat 418 457 IPR000225 GO:0005515(InterPro)
Lac13g0683 631 Pfam Armadillo/beta-catenin-like repeat 377 416 IPR000225 GO:0005515(InterPro)
Lac13g0683 631 Pfam Armadillo/beta-catenin-like repeat 460 498 IPR000225 GO:0005515(InterPro)
Lac13g0683 631 CDD RING-Ubox_PUB 251 303 IPR045210 -
Lac13g0683 631 Gene3D - 11 123 IPR036537 GO:0007166(InterPro)
Lac13g0683 631 SUPERFAMILY ARM repeat 347 620 IPR016024 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0683 Lac-Chr13:5210399 Lac9g2481 Lac-Chr9:43655656 3.80E-98 dispersed
Lac13g0683 Lac-Chr13:5210399 Lac7g2706 Lac-Chr7:46146918 1.30E-119 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0683 K27628 - csv:101221065 1077.39