Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac13g0700 | ATGGCGCTCCACCACGGAAACGGCAACGACGACGGCGCCTCCGCCGCATTCAACATTTGCAACGGCAATGGCCACGGCCACTTTTATTCGGATCCGCTGAAGTGGGGGGCGGCGGCGGACGCGATGAAGGGCAGCCATTTGGATGAGGTGATGCGGATGGTGGAGGAGTACCGGAAGCCGGTGGTTCGGCTCGGTGGCGAGGGCTTGACGGTTGCTCAGGTCGCCGCCATTGCCGGCGGCGCCGGCCGGACTGTCGCGGTGGAGCTGGCGGAGGAGAGCCGGGCTCGGGTGAAGGCGAGTAGTGATTGGGTAATGGAGAGTATGAATCGAGGGACGGATAGTTACGGCGTTACGACCGGTTTTGGCGCAACTTCGCATCGACGAACGAAAGAAGGAGGTGCTCTTCAAAGAGAACTTATCAGGTTTTTGAATTCCGGAATCTTCGGCAACGGCATCGAATCTTCTCATAAATTGCCTCCGGCGGCGACCAGAGCCGCCATGTTGGTGAGAATCAACACCCTTTTACAGGGATATTCGGGCATTAGATTTGAGATTTTGGAAGCCCTAACGAAGTTTCTAAACCATGATATTACTCCATGTTTGCCTCTAAGGGGAACCATAACTGCATCTGGTGATTTGGTTCCTCTTTCTTACATTGCTGGGCTTTTGATTGGAAGGCCCAATTCCAAGGCTGTTGGGCCAAATGGGGAGTTCATTAACCCATCTGAGGCCTTTAAGTTAGTTGGAATTGAGGGTGGGTTTTTTGAGTTGCAGCCCAAGGAAGGTCTTGCTCTTGTGAATGGCACTGCTGTTGGGTCTGGCTTGGCTTCCATGGTGCTTTTTGAAGCCAACATTTTGGCTGTTCTTTCTGAAGTGTTGTCTGCTCTTTTTGCTGAGGTTATGCAAGGGAAGCCTGAATTTACAGATCACTTGACACATAAGTTGAAGCATCATCCTGGTCAGATTGAAGCTGCAGCTATAATGGAACATATATTGGATGGAAGTTCTTATGTGAAATCGGCTCAAAAGTTGCATGAGATTGATCCTTTGCAGAAGCCTAAACAAGATAGGTATGCTCTTAGAACATCTCCACAATGGCTTGGACCACAAATTGAAGTCATTCGAGCTGCGACGAAGATGATTGAGAGGGAAATAAACTCAGTGAATGACAACCCTTTGATTGATGTTTCGAGAAACAAGGCCTTACATGGAGGAAATTTTCAAGGCACACCAATTGGTGTTTCCATGGATAACACTAGGTTGGCCATTGCTTCCATTGGCAAACTTATGTTTGCTCAATTCTCAGAGCTTGTCAATGATTTCTATAACAATGGGTTGCCTTCAAATCTTTCGGCAAGCCGCAATCCTAGTTTGGATTATGGCTTCAAAGGAGCCGAAATTGCTATGGCATCGTATTGTTCTGAACTTCAATTCTTAGCCAACCCTGTTACCAACCATGTCCAAAGTGCAGAGCAACATAACCAAGATGTGAATTCTTTGGGGTTGATTTCTTCAAGAAAAACAGAAGAAGCAGTTGAAATATTGAAGTTGATGTCCACTTCTTTCTTGGTAGCCCTTTGCCAAGCTATTGACTTAAGGCACTTAGAAGAGAACTTGAAGAGCACAGTGAAAAACACCATTAGCCAAGTGGCCAAGAAAGTACTAATCATGGGGTATAATGGAGAGCTTCACCCAATCCGATTTAGTGAAAAACATTTGCTTCAAGTGGTTGATAGAGAGTATGTTTTCACTTACATTGATGACCCTTGCAGTGCAACCTATCCGCTAATGCAAAAGTTAAGGCAAGTTTTAGTCGAGCATGCTTTAAACAATGGTGAGAAAGAGGAAAACCTAACTACTTCCATTTTCCACAAGATAGGAGCATTCGAGGAAGAACTAAAGAACCTCTTGCCAAAAGAAGTAGAAAATGCAAGAGTCGAATTCGAGAGTGAAAGTTCGATAATTCCAAATCAAATCAAAGAATGCAGGTCTTACCCATTATACAAGTTCGTTAGAGAAACTTTGGGGACAAGTTTACTGACAGGTGAGAAAGTCAAATCCCCTGGTGAAGAATTCGATAAGGTTTTGTCGGCCATTTGTGCTGGAAAGTTGATTGATCCAATATTGGAATGCTTAAAAGGATGGAACCGTGCTCCCCTCCCTATCAACTAA | 2172 | 45.67 | MALHHGNGNDDGASAAFNICNGNGHGHFYSDPLKWGAAADAMKGSHLDEVMRMVEEYRKPVVRLGGEGLTVAQVAAIAGGAGRTVAVELAEESRARVKASSDWVMESMNRGTDSYGVTTGFGATSHRRTKEGGALQRELIRFLNSGIFGNGIESSHKLPPAATRAAMLVRINTLLQGYSGIRFEILEALTKFLNHDITPCLPLRGTITASGDLVPLSYIAGLLIGRPNSKAVGPNGEFINPSEAFKLVGIEGGFFELQPKEGLALVNGTAVGSGLASMVLFEANILAVLSEVLSALFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKSAQKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRAATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTEEAVEILKLMSTSFLVALCQAIDLRHLEENLKSTVKNTISQVAKKVLIMGYNGELHPIRFSEKHLLQVVDREYVFTYIDDPCSATYPLMQKLRQVLVEHALNNGEKEENLTTSIFHKIGAFEEELKNLLPKEVENARVEFESESSIIPNQIKECRSYPLYKFVRETLGTSLLTGEKVKSPGEEFDKVLSAICAGKLIDPILECLKGWNRAPLPIN | 723 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 5324893 | 5330024 | - | Lag0040496.1 | Lac13g0700 | 591856 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac13g0700 | 723 | Pfam | Aromatic amino acid lyase | 69 | 548 | IPR001106 | - | |
Lac13g0700 | 723 | Gene3D | - | 536 | 657 | IPR023144 | - | |
Lac13g0700 | 723 | FunFam | Phenylalanine ammonia-lyase | 270 | 553 | - | - | |
Lac13g0700 | 723 | FunFam | Phenylalanine ammonia-lyase | 24 | 269 | - | - | |
Lac13g0700 | 723 | SUPERFAMILY | L-aspartase-like | 31 | 722 | IPR008948 | GO:0003824(InterPro) | |
Lac13g0700 | 723 | Gene3D | Fumarase/aspartase (Central domain) | 270 | 717 | - | - | |
Lac13g0700 | 723 | CDD | PAL-HAL | 67 | 533 | IPR001106 | - | |
Lac13g0700 | 723 | NCBIfam | phenylalanine ammonia-lyase | 31 | 713 | IPR005922 | GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro) | |
Lac13g0700 | 723 | Gene3D | - | 23 | 269 | IPR024083 | - | |
Lac13g0700 | 723 | FunFam | Phenylalanine ammonia-lyase | 536 | 657 | - | - | |
Lac13g0700 | 723 | ProSitePatterns | Phenylalanine and histidine ammonia-lyases signature. | 205 | 221 | IPR022313 | GO:0016841(InterPro) | |
Lac13g0700 | 723 | PANTHER | HISTIDINE AMMONIA-LYASE | 27 | 722 | IPR001106 | GO:0016841(PANTHER)|GO:0045548(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac13g0700 | Lac-Chr13:5324893 | Lac1g2142 | Lac-Chr1:42854717 | 0.00E+00 | dispersed | |
Lac13g0700 | Lac-Chr13:5324893 | Lac8g2407 | Lac-Chr8:42161594 | 0.00E+00 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac13g0700 | K10775 | - | rcu:8273543 | 1196.03 |