Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0700 ATGGCGCTCCACCACGGAAACGGCAACGACGACGGCGCCTCCGCCGCATTCAACATTTGCAACGGCAATGGCCACGGCCACTTTTATTCGGATCCGCTGAAGTGGGGGGCGGCGGCGGACGCGATGAAGGGCAGCCATTTGGATGAGGTGATGCGGATGGTGGAGGAGTACCGGAAGCCGGTGGTTCGGCTCGGTGGCGAGGGCTTGACGGTTGCTCAGGTCGCCGCCATTGCCGGCGGCGCCGGCCGGACTGTCGCGGTGGAGCTGGCGGAGGAGAGCCGGGCTCGGGTGAAGGCGAGTAGTGATTGGGTAATGGAGAGTATGAATCGAGGGACGGATAGTTACGGCGTTACGACCGGTTTTGGCGCAACTTCGCATCGACGAACGAAAGAAGGAGGTGCTCTTCAAAGAGAACTTATCAGGTTTTTGAATTCCGGAATCTTCGGCAACGGCATCGAATCTTCTCATAAATTGCCTCCGGCGGCGACCAGAGCCGCCATGTTGGTGAGAATCAACACCCTTTTACAGGGATATTCGGGCATTAGATTTGAGATTTTGGAAGCCCTAACGAAGTTTCTAAACCATGATATTACTCCATGTTTGCCTCTAAGGGGAACCATAACTGCATCTGGTGATTTGGTTCCTCTTTCTTACATTGCTGGGCTTTTGATTGGAAGGCCCAATTCCAAGGCTGTTGGGCCAAATGGGGAGTTCATTAACCCATCTGAGGCCTTTAAGTTAGTTGGAATTGAGGGTGGGTTTTTTGAGTTGCAGCCCAAGGAAGGTCTTGCTCTTGTGAATGGCACTGCTGTTGGGTCTGGCTTGGCTTCCATGGTGCTTTTTGAAGCCAACATTTTGGCTGTTCTTTCTGAAGTGTTGTCTGCTCTTTTTGCTGAGGTTATGCAAGGGAAGCCTGAATTTACAGATCACTTGACACATAAGTTGAAGCATCATCCTGGTCAGATTGAAGCTGCAGCTATAATGGAACATATATTGGATGGAAGTTCTTATGTGAAATCGGCTCAAAAGTTGCATGAGATTGATCCTTTGCAGAAGCCTAAACAAGATAGGTATGCTCTTAGAACATCTCCACAATGGCTTGGACCACAAATTGAAGTCATTCGAGCTGCGACGAAGATGATTGAGAGGGAAATAAACTCAGTGAATGACAACCCTTTGATTGATGTTTCGAGAAACAAGGCCTTACATGGAGGAAATTTTCAAGGCACACCAATTGGTGTTTCCATGGATAACACTAGGTTGGCCATTGCTTCCATTGGCAAACTTATGTTTGCTCAATTCTCAGAGCTTGTCAATGATTTCTATAACAATGGGTTGCCTTCAAATCTTTCGGCAAGCCGCAATCCTAGTTTGGATTATGGCTTCAAAGGAGCCGAAATTGCTATGGCATCGTATTGTTCTGAACTTCAATTCTTAGCCAACCCTGTTACCAACCATGTCCAAAGTGCAGAGCAACATAACCAAGATGTGAATTCTTTGGGGTTGATTTCTTCAAGAAAAACAGAAGAAGCAGTTGAAATATTGAAGTTGATGTCCACTTCTTTCTTGGTAGCCCTTTGCCAAGCTATTGACTTAAGGCACTTAGAAGAGAACTTGAAGAGCACAGTGAAAAACACCATTAGCCAAGTGGCCAAGAAAGTACTAATCATGGGGTATAATGGAGAGCTTCACCCAATCCGATTTAGTGAAAAACATTTGCTTCAAGTGGTTGATAGAGAGTATGTTTTCACTTACATTGATGACCCTTGCAGTGCAACCTATCCGCTAATGCAAAAGTTAAGGCAAGTTTTAGTCGAGCATGCTTTAAACAATGGTGAGAAAGAGGAAAACCTAACTACTTCCATTTTCCACAAGATAGGAGCATTCGAGGAAGAACTAAAGAACCTCTTGCCAAAAGAAGTAGAAAATGCAAGAGTCGAATTCGAGAGTGAAAGTTCGATAATTCCAAATCAAATCAAAGAATGCAGGTCTTACCCATTATACAAGTTCGTTAGAGAAACTTTGGGGACAAGTTTACTGACAGGTGAGAAAGTCAAATCCCCTGGTGAAGAATTCGATAAGGTTTTGTCGGCCATTTGTGCTGGAAAGTTGATTGATCCAATATTGGAATGCTTAAAAGGATGGAACCGTGCTCCCCTCCCTATCAACTAA 2172 45.67 MALHHGNGNDDGASAAFNICNGNGHGHFYSDPLKWGAAADAMKGSHLDEVMRMVEEYRKPVVRLGGEGLTVAQVAAIAGGAGRTVAVELAEESRARVKASSDWVMESMNRGTDSYGVTTGFGATSHRRTKEGGALQRELIRFLNSGIFGNGIESSHKLPPAATRAAMLVRINTLLQGYSGIRFEILEALTKFLNHDITPCLPLRGTITASGDLVPLSYIAGLLIGRPNSKAVGPNGEFINPSEAFKLVGIEGGFFELQPKEGLALVNGTAVGSGLASMVLFEANILAVLSEVLSALFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKSAQKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRAATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTEEAVEILKLMSTSFLVALCQAIDLRHLEENLKSTVKNTISQVAKKVLIMGYNGELHPIRFSEKHLLQVVDREYVFTYIDDPCSATYPLMQKLRQVLVEHALNNGEKEENLTTSIFHKIGAFEEELKNLLPKEVENARVEFESESSIIPNQIKECRSYPLYKFVRETLGTSLLTGEKVKSPGEEFDKVLSAICAGKLIDPILECLKGWNRAPLPIN 723
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5324893 5330024 - Lag0040496.1 Lac13g0700 591856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0700 723 Pfam Aromatic amino acid lyase 69 548 IPR001106 -
Lac13g0700 723 Gene3D - 536 657 IPR023144 -
Lac13g0700 723 FunFam Phenylalanine ammonia-lyase 270 553 - -
Lac13g0700 723 FunFam Phenylalanine ammonia-lyase 24 269 - -
Lac13g0700 723 SUPERFAMILY L-aspartase-like 31 722 IPR008948 GO:0003824(InterPro)
Lac13g0700 723 Gene3D Fumarase/aspartase (Central domain) 270 717 - -
Lac13g0700 723 CDD PAL-HAL 67 533 IPR001106 -
Lac13g0700 723 NCBIfam phenylalanine ammonia-lyase 31 713 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Lac13g0700 723 Gene3D - 23 269 IPR024083 -
Lac13g0700 723 FunFam Phenylalanine ammonia-lyase 536 657 - -
Lac13g0700 723 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 205 221 IPR022313 GO:0016841(InterPro)
Lac13g0700 723 PANTHER HISTIDINE AMMONIA-LYASE 27 722 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0700 Lac-Chr13:5324893 Lac1g2142 Lac-Chr1:42854717 0.00E+00 dispersed
Lac13g0700 Lac-Chr13:5324893 Lac8g2407 Lac-Chr8:42161594 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0700 K10775 - rcu:8273543 1196.03