Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0708 ATGGCGAAAGACGACGTCACGGCGGCGCGGGGGTTCTCCGGCAAGGACTACCACGACCCTCCGCCCGCTCCGCTGTTCGACGCGGCGGAGCTCTGCAAGTGGTCCTTTTACAGAGCCGTCATCGCCGAGTTCACTGCCACTCTCCTTTTTCTCTACGTCACCATCTTGACTGTGATCGGCTACAATAGCCAGACCGACCCCGACAAGCACGGCGCCGACGCTTGCGGCGGCGTCGGCATCCTCGGCATCGCTTGGTCCTTCGGCGGCATGATTTTCGTCCTCGTCTACTGCACCGCCGGCATTTCAGGTGGGCACATCAACCCGGCGGTGACGTTCGGGCTGTTCTTAGCCCGTAAGGTGTCGCTGGTCCGGGCAGTGGCGTACATGGTGGCTCAGTGCTTGGGAGCCGTATGCGGAGTGGGGCTCGTGAAATCGTTCCAAAAGGCTTACTTCATCAAGTACGGCGGCGGTGCGAACCAGCTCGCCGACGGCTACAGCAAAGGCGTCGGCTTGGGCGCTGAAATCGTCGGGACCTTCATCTTGGTTTACACCGTCTTCTCCGCCACCGATCCCAAGAGAAACGCCAGAGACTCCCATGTTCCTGTACGCCCTCTTCTTCTTCTTCCTTTGCAATTTTTTATTCCTTAA 648 59.41 MAKDDVTAARGFSGKDYHDPPPAPLFDAAELCKWSFYRAVIAEFTATLLFLYVTILTVIGYNSQTDPDKHGADACGGVGILGIAWSFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVAYMVAQCLGAVCGVGLVKSFQKAYFIKYGGGANQLADGYSKGVGLGAEIVGTFILVYTVFSATDPKRNARDSHVPVRPLLLLPLQFFIP 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5428713 5430003 + Lag0040504.1 Lac13g0708 591864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0708 215 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Lac13g0708 215 SUPERFAMILY Aquaporin-like 30 203 IPR023271 -
Lac13g0708 215 Pfam Major intrinsic protein 31 201 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac13g0708 215 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 8 205 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Lac13g0708 215 Gene3D Glycerol uptake facilitator protein. 23 214 IPR023271 -
Lac13g0708 215 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac13g0708 215 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac13g0708 215 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac13g0708 215 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g1462 Lac-Chr12:26633174 Lac13g0708 Lac-Chr13:5428713 5.70E-09 dispersed
Lac13g0708 Lac-Chr13:5428713 Lac1g2124 Lac-Chr1:42694800 6.50E-90 dispersed
Lac10g3020 Lac-Chr10:44771310 Lac13g0708 Lac-Chr13:5428713 3.50E-75 wgd
Lac13g0708 Lac-Chr13:5428713 Lac8g2417 Lac-Chr8:42264865 1.20E-88 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0708 K09872 - csv:101204956 376.711