Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0736 ATGTTTGGATCGGTGGTAAATTCTCAAGTCGCTCCAAATTCTGGCCAGCTCTTATTCGCATCCACTCCACGTATTGACAAAAACCCATCAATTTTGAGAGAGGAATATGAATTTGGAGAGGGAAAATCTAGGTGGGTTTTTAGAGAGATGAACAAAGAGAGAAGAATCAAGCTCTCTCTTCGTCTCTGTAGCTGTGAAATTGAAATTCCTTATTCTTCTGATCCTACCCAAGAAGGACAAATCAATGGCGACAAAAACATACCCTTGTATTGTACTTTAATGGCAGGAATGTTTAATGGGGAGGGATCGTCGTCGGTAACTTCGTCGCCTTTGCAGCTCTTTCCATGGTCGTTATCGCCCGGTATAGGATCGCCATACCCTTTTCTAAGGGAGCTTAAGTCTGAGGAGAGGGGCTTGTGTCTGATTCACCTTCTTCTTGCCTGTGCCAACCAAGTTGCTATTGGTAACATTGAAAATGCTAATGTTGGCCTTGAGCAAATTTCCCACCTCGCTTCGCCGGACGGGGACACAATGCAGCGAATTGCTGCCTACTTCACGGAGGCGCTCGCCGATCGGATACTTAAATCATGGCCTGGCTTACACAAAGCCTTGAACTCTACCAAAATCTTGTCAGTCCCTGAAGAGATTCTTGCTCAGAGATTGTTCTTTGAACTGTGTCCTTTCTTGAAGCTTGCATATGTGATAACCAATCAGGCTATCATAGAAGCTATGGAGGGAGAAAGGATGATTCATATTATTGATTTCAAATCATGTGAGCCTGCCCAATGGATTAACCTTCTTCAGACATTGAAAGATAGGCCAGACGGTCCGCCCCACTTGAGAATAACCGGAATTCACGAACAGAAGGAGGTGTTGGAACAAATGGCTCTTCGGCTTACCGAAGAGGCCGAAAAATGGGACATACCATTTCAGTTCACCCCTGTTGTTAGCAAGTTAGAGAACCTTGACCTTGAAAGTTTAAGGGTCAAGACAGGGGAAGCACTTGCAGTCAGCTCTGTACTTGAGCTTCACTCGATTTTAGCTACCGACGATGATAAGAGAACGTCGCCTTCTGCATCGAAGAACTTGCAGAAACTCCTTCGTATGAAGCAGCGAACTCTCGGAGAGTGGCTCGAGACAGATTCGTTGCAAGTTTTTAGTAGCCCTGATTCAGCTTCAGTATCTTCCCCATCAGGATTGAATCCTTCCCAAAAGATGAATAGCTTTTTGAGTGCACTCTGGGGCCTTTCTCCAAAAGTGATGGTAATAACTGAGCAAGAATCAAACCTGAATGGATCAGCCTTCATGGAGAGAGTACTAGAGGCACTAAACTTCTATGCTGCATTGTTTGATTGCTTGGAGTCGACCGTGTCGAGATCATCCATCGAGCGACAGAGGGTCGAGAAGATGCTTTTAGGAGAGGAAATAAAAAACATCATTGCTTGCGAGGGGGTGGAGAGAACAGAGAGGCACGAAAAGCTCGAGAAATGGATACTAAGGCTCGAATCCGTGGGGTTCGGGCGGGTTCCGTTGAGTTATCATAGTATGTTACTGGGAAGTAGATTGTTGCAGAGCTATGGATATGATGGTTACAAATTCAAAGAGGAGAATGGATTTTTGTTCATCTGTTGGCAAGATAGGCCTCTTTTTTCAGTCTCAGCTTGGGGGTTTCAAAGGCAGAGCTGA 1686 45.14 MFGSVVNSQVAPNSGQLLFASTPRIDKNPSILREEYEFGEGKSRWVFREMNKERRIKLSLRLCSCEIEIPYSSDPTQEGQINGDKNIPLYCTLMAGMFNGEGSSSVTSSPLQLFPWSLSPGIGSPYPFLRELKSEERGLCLIHLLLACANQVAIGNIENANVGLEQISHLASPDGDTMQRIAAYFTEALADRILKSWPGLHKALNSTKILSVPEEILAQRLFFELCPFLKLAYVITNQAIIEAMEGERMIHIIDFKSCEPAQWINLLQTLKDRPDGPPHLRITGIHEQKEVLEQMALRLTEEAEKWDIPFQFTPVVSKLENLDLESLRVKTGEALAVSSVLELHSILATDDDKRTSPSASKNLQKLLRMKQRTLGEWLETDSLQVFSSPDSASVSSPSGLNPSQKMNSFLSALWGLSPKVMVITEQESNLNGSAFMERVLEALNFYAALFDCLESTVSRSSIERQRVEKMLLGEEIKNIIACEGVERTERHEKLEKWILRLESVGFGRVPLSYHSMLLGSRLLQSYGYDGYKFKEENGFLFICWQDRPLFSVSAWGFQRQS 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5707303 5709792 - Lag0040532.1 Lac13g0736 591892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0736 561 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 130 555 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Lac13g0736 561 ProSiteProfiles GRAS family profile. 132 556 IPR005202 -
Lac13g0736 561 Pfam GRAS domain family 141 555 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0736 Lac-Chr13:5707303 Lac3g1400 Lac-Chr3:12513692 1.40E-165 dispersed
Lac13g0736 Lac-Chr13:5707303 Lac7g2743 Lac-Chr7:46582653 2.50E-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23173 PF03514 GRAS 9.10E-135 CL0063 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0736 - - - 0.0