Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0746 ATGTTCCATCCTCATGATTCTGAACTCAGAGTTGGTCATATTCTTTTTGGAGTCTTCTCCCCTTCTGTTCCATGTTGGCTTGCCTGTACTTTCATTCTTCTTAAAGAAAGCGATTCTTTTAGCAAGTACCTGAGGCTAATGAGAAGGAATTTGACAGATAGGGAGGTGGAAGGTTGGCTTGCTCTCTTGGATATCCTAGGAAAGAAATTCTTGCAGGGACTTGTTGAAAGGGAATCCTTGTTTCTTGGAAGAGTTTCTTATCCTAGAAAAGGCATTCTATTGATAAAAATGTCATCTGCAAATCCTTATTTTGATGACATTCGGACCAAACCCGAGGTTATTGATCCTCCTCAAGATGATGATATGATGGATGTTAGTGAAAGTGTGAGTGAACTTGCTCGAAATGGAGGAAAACCTAATGCAGCTGTCTCTAGCAGCGTCCGTGAGCTGTTGGAGTGCCCTGTTTGCTTAAATGCTATGTACCCTCCCATTCATCAGTGTTCGAATGGTCACACGTTGTGTTCCGGTTGCAAGCCTAGGGTGCACAACCGGTGTCCCACCTGCAGGCATGAACTTGGCAATATTAGATGTCTTGCATTAGAGAAGGTGGCTGCATCTCTGGAACTTCCATGTAAATATCAAACTTTTGGATGTGTGGGCATATACCCATACTATAGCAAGCTGAAACATGAATCTCAATGTGCCTATCGACCCTATAACTGTCCATATGCGGGGTCGGAATGCACGGTTATTGGCGATATTCCATTTTTGGTAGCCCACCTCAAAGATGATCACAAAGTTGACATGCATAATGGGAGCACTTTCAATCATCGATACGTTAAGTCAAATCCACAAGAGGTCGAAAATGCTACCTGGATGTTAACGGTTTTCAGTTGCTTCGGTCAGTATTTTTGTTTACACTTCGAAGCTTTCCAGCTCGGAATGGCGCCTGTCTACATAGCATTCTTGCGGTTTATGGGTGATGACAATGAGGCGAAGAACTACAGTTATAGTCTTGAGGTTGGTGGAAATGGGAGGAAGATGGTTTGGCAAGGAGTGCCACGGAGTATTCGGGACAGTCATCGGAAGGTCCGAGACAGTTTTGACGGTCTTATTATCCAACGTAACATGGCGCTCTTCTTCTCGGGGGGAGATCGGAAAGAATTGAAACTCAGGGGATCAATCTATCGGAATTTTCCTAAACGTATTTGGAGAATTAAGTTTGTGGGTTTGCACTGCTTGCTTCAGCGTTTGAGTTTGGATTCATTTTTGCTAGACATGTCTATGAAGTTACACCATATTGATCTAAAGGGTGGTTCAGGTACCCAGAAAAGGCTGAAGGATCTCACATCTCAGTCTGCCAATAAATTCTGTGCAGATTGTGGATCTCCAGATCCAAAATGGGTATCTTTGAGTTTTGGGGCATTTATTTGCATCAAGTGTTCTGGAGTACACCGAAGCCTCGGAGTCCATATATCTAAGGTTCTTTCAGTGAAGTTAGATGATTGGACAGATGAACAAGTTGATGCTTTGATGAGTGTAGGTGGAAATACTGCCGTAAATAAAAAGTATGAACTTTGCATCGGGGATGGCAATAAAAAACCAAAACCAGACTCCTCCATAGAGGAGCGTTTTGATTTTATTAGGAAAAAATATGAGCTGCTGCAATTCTCAAGTCTTGATGATCAGTTTTTCTGTCCTTTTCCACCCCCACAGAAGAGAAATGCATCATTCTCGAATAGCACTTCTGCTGATATTGAAGTAAACCTAGAAAAGAGGAATTATGAAAAAGTACCAACAAAAACTCGTATTGGAAGTGCATTCCGGAATAGCTGGGGAAGAAAAGATTCTGAGCCTAAGAACTGCAAGAAGGGAAATCCATTGGTATTAAGCAGCTCAATGGCTGGTATGGTTGAATTTGTTGGTTTAATTAAGGTCAACGTGGTTAGAGGAACCAATTTAGCTGTCAGGGATGTCGTGTCGAGTGATCCGTATGTAATTCTCTCGTTGGGTAATCAATCAGTGAAGACACGTGTTATAAAGAGCAGTTTGAATCCAGTCTGGAATGAGAGCCTAATGTTGTCAATTCCAGATTTCATTCCTCCATTAAGGGTGCTTGTGTATGACAAAGATACATTTTCAACCGATGATTTCATGGGCGAAGCAGAAATCGACATCCATCCGCTGCTCACCGCAGCCCGAGCCTGTGAGAGGTCCACAATCAGTGAACCAATGCAGCTAGGAAAATGGGTTGCAAGCAAGGAGAACACTCTTGCAAAGGATGGCATCATCACTCTTGAAGATGGGAAGATCCGACAAGAAATCTCCTTGAAGCTGCAGAATGTCGAGAGAGGCGTGCTGGAGATGGAGCTCGAATGTGTTCCTCTTTCTCAGTAG 2397 43.01 MFHPHDSELRVGHILFGVFSPSVPCWLACTFILLKESDSFSKYLRLMRRNLTDREVEGWLALLDILGKKFLQGLVERESLFLGRVSYPRKGILLIKMSSANPYFDDIRTKPEVIDPPQDDDMMDVSESVSELARNGGKPNAAVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQTFGCVGIYPYYSKLKHESQCAYRPYNCPYAGSECTVIGDIPFLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMVWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRGSIYRNFPKRIWRIKFVGLHCLLQRLSLDSFLLDMSMKLHHIDLKGGSGTQKRLKDLTSQSANKFCADCGSPDPKWVSLSFGAFICIKCSGVHRSLGVHISKVLSVKLDDWTDEQVDALMSVGGNTAVNKKYELCIGDGNKKPKPDSSIEERFDFIRKKYELLQFSSLDDQFFCPFPPPQKRNASFSNSTSADIEVNLEKRNYEKVPTKTRIGSAFRNSWGRKDSEPKNCKKGNPLVLSSSMAGMVEFVGLIKVNVVRGTNLAVRDVVSSDPYVILSLGNQSVKTRVIKSSLNPVWNESLMLSIPDFIPPLRVLVYDKDTFSTDDFMGEAEIDIHPLLTAARACERSTISEPMQLGKWVASKENTLAKDGIITLEDGKIRQEISLKLQNVERGVLEMELECVPLSQ 798
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5823561 5835493 + Lag0040542.1 Lac13g0746 591902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0746 798 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 640 798 - -
Lac13g0746 798 Gene3D Arf GTPase activating protein 430 564 IPR038508 -
Lac13g0746 798 FunFam E3 ubiquitin-protein ligase SINAT5-like 111 204 - -
Lac13g0746 798 SUPERFAMILY TRAF domain-like 206 392 - -
Lac13g0746 798 PRINTS HIV Rev interacting protein signature 495 516 IPR001164 GO:0005096(InterPro)
Lac13g0746 798 PRINTS HIV Rev interacting protein signature 455 474 IPR001164 GO:0005096(InterPro)
Lac13g0746 798 PRINTS HIV Rev interacting protein signature 474 491 IPR001164 GO:0005096(InterPro)
Lac13g0746 798 ProSiteProfiles Zinc finger SIAH-type profile. 206 266 IPR013010 GO:0008270(InterPro)
Lac13g0746 798 FunFam E3 ubiquitin-protein ligase SINAT3 205 261 - -
Lac13g0746 798 SUPERFAMILY ArfGap/RecO-like zinc finger 443 557 IPR037278 -
Lac13g0746 798 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 439 798 IPR044518 GO:0005096(InterPro)|GO:0005543(InterPro)
Lac13g0746 798 CDD RING-HC_SIAHs 151 189 - -
Lac13g0746 798 SMART C2_3c 643 738 IPR000008 -
Lac13g0746 798 SUPERFAMILY RING/U-box 147 194 - -
Lac13g0746 798 ProSiteProfiles Zinc finger RING-type profile. 153 189 IPR001841 -
Lac13g0746 798 Pfam Sina, TRAF-like domain 297 391 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Lac13g0746 798 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 262 395 IPR008974 GO:0005515(InterPro)
Lac13g0746 798 CDD ArfGap 446 552 - -
Lac13g0746 798 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 205 261 IPR013083 -
Lac13g0746 798 ProSiteProfiles C2 domain profile. 624 740 IPR000008 -
Lac13g0746 798 Gene3D C2 domain 641 795 IPR035892 -
Lac13g0746 798 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 639 735 IPR035892 -
Lac13g0746 798 Pfam Putative GTPase activating protein for Arf 444 557 IPR001164 GO:0005096(InterPro)
Lac13g0746 798 CDD Sina 267 392 - -
Lac13g0746 798 FunFam E3 ubiquitin-protein ligase SINAT5-like 262 394 - -
Lac13g0746 798 FunFam stromal membrane-associated protein 1 isoform X1 431 563 - -
Lac13g0746 798 ProSiteProfiles ARF GTPase-activating proteins domain profile. 443 557 IPR001164 GO:0005096(InterPro)
Lac13g0746 798 CDD C2_ArfGAP 641 785 - -
Lac13g0746 798 Pfam Sina, zinc finger 202 277 - -
Lac13g0746 798 SMART arf_gap_3 443 564 IPR001164 GO:0005096(InterPro)
Lac13g0746 798 Pfam C2 domain 643 730 IPR000008 -
Lac13g0746 798 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 204 IPR013083 -
Lac13g0746 798 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 153 188 IPR049548 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g1164 Lac-Chr10:9835566 Lac13g0746 Lac-Chr13:5823561 1.20E-85 dispersed
Lac13g0746 Lac-Chr13:5823561 Lac8g2069 Lac-Chr8:39178006 2.40E-166 dispersed
Lac13g0746 Lac-Chr13:5823561 Lac12g0956 Lac-Chr12:10487448 3.40E-120 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0746 K04506 - csv:101221541 680.633