Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0750 ATGGCTCTTCTCTCTGCTGAGGCTCAGTTTCATGTCTTGGCTGTTGATGACAGCCTCGTTGATCGGAAGCTGATCGAAAGACTCCTCAAAACCTCCTCCTTCAATGTTACTGCTGTGGATTCTGGAAGCAAAGCTTTGGAGCTTCTGGGTTTGGTTAGAGAGAGAAATGGAAGCACCCATTCTCCTCTTTCCCCTGAAAATCATCATCATCATCATCAGGAAATTGAAGTTAATCTCATCATTACAGATTACTGTATGCCAGAAATGACAGGCTATGATCTTCTAAGAAAGATCAAGGGATCTGACTCACTTAAAGACATTCCTGTGGTGATTATGTCCTCTGAGAATGTTCCATCAAGAATCAACAGATGTTTGGAAGAAGGAGCTGAGGAGTTTCTGCTAAAACCAGTGAAGTTATCTGATGTCAACAAGCTTAAGCCTTTCATTTGTAGAGGAAAAGCCAAGGAAATGGAATCCAACAATCTCAAGAGAAAGGAAATGGGATCTGCCCAATCATCTGAGAGAACAAGAACAAAATACAATGATCATTCCTCCTAA 558 41.4 MALLSAEAQFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSTHSPLSPENHHHHHQEIEVNLIITDYCMPEMTGYDLLRKIKGSDSLKDIPVVIMSSENVPSRINRCLEEGAEEFLLKPVKLSDVNKLKPFICRGKAKEMESNNLKRKEMGSAQSSERTRTKYNDHSS 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5868797 5870168 - Lag0040546.1 Lac13g0750 591906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0750 185 SMART REC_2 10 146 IPR001789 GO:0000160(InterPro)
Lac13g0750 185 PANTHER TWO-COMPONENT RESPONSE REGULATOR 7 173 IPR045279 GO:0009736(InterPro)
Lac13g0750 185 SUPERFAMILY CheY-like 10 142 IPR011006 -
Lac13g0750 185 Gene3D - 11 182 - -
Lac13g0750 185 ProSiteProfiles Response regulatory domain profile. 11 150 IPR001789 GO:0000160(InterPro)
Lac13g0750 185 CDD REC_typeA_ARR 12 145 - -
Lac13g0750 185 Pfam Response regulator receiver domain 12 142 IPR001789 GO:0000160(InterPro)
Lac13g0750 185 MobiDBLite consensus disorder prediction 159 185 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0549 Lac-Chr13:4036460 Lac13g0750 Lac-Chr13:5868797 8.70E-15 dispersed
Lac13g0750 Lac-Chr13:5868797 Lac1g1457 Lac-Chr1:35293500 1.20E-52 dispersed
Lac13g0750 Lac-Chr13:5868797 Lac10g2145 Lac-Chr10:31908164 1.10E-53 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23175 PF00072 Response_reg 5.70E-20 CL0304 Lac TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0750 K14492 - csv:101207245 283.878