Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0769 ATGACTGATGTCAGTCCAAGGACCGACATCTCTACAGATGTTGACACAGATGACAAAAACCAGAGGCTTGAAATGGTCCAGCGTAATGCTGCTGTGGCTTCTGATTCCAGTGATAGAACAAAAGATAAGTCTGATCAGAAGACTCTACGTAGGCTTGCACAGAATCGGGAAGCTGCCAGAAAAAGCCGACTACGGAAAAAAGCATATGTCCAACAGCTGGAGAGTAGTCGTTTAAAGTTGACCCAATTAGAGCAGGAGCTTCAGCGAGCACGGCAGCAGGGAATCTTCATATCAAGCTCAGGAGATCAGGCCCATTCGATGGCTGGAAATGGGGCCATGGCATTTGATGTGGAATATGCCCGTTGGTTGGAAGAACAAAACAAGCAGATCAATGAACTGAGAGCAGCAGTAAACTCTCATGCTAGTGATACTGAACTTCGAATGGTTGTCGATGGCATCTTGCTTCATTATGATGAGGTTTTTCGGTTAAAAGGCGTCGCTGCAAAGGCTGATGTTTTCCATTTATTGTCTGGCATGTGGAAAACACCTGCTGAAAGATGTTTTTTGTGGCTTGGTGGTTTTCGTTCATCAGAGCTCCTAAAGCTTCTTGTCAATCAATTAGAGCCCCTCACAGAACAGCAGTTGATGGGCATATCAAACTTGCAGCAGTCCTCACAGCAAACTGAAGATGCATTGTCACAAGGCATGGAGGCCTTGCAACAATCGTTGGCCGAGACGTTGTCCAGTGGATCTCTTGGCTCCTCGAATACGTCTGGCAACGTGGCAAACTACATGGGTCAAATGGCCACAGCCATGGGTAAACTTGGGACTCTTGAGGGGTTTATTCGCCAGGCTGACAATCTACGGCAACAAACACTGCAACAAATGCTTCGAATATTGACAACTCGTCAGTCAGCTCGTGCACTTCTTGCAATCCATGATTACTTCTCCAGACTACGAGCCCTCAGTTCCCTGTGGCTTGCTCGCCCAAAAGAGTGA 999 47.05 MTDVSPRTDISTDVDTDDKNQRLEMVQRNAAVASDSSDRTKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHSMAGNGAMAFDVEYARWLEEQNKQINELRAAVNSHASDTELRMVVDGILLHYDEVFRLKGVAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLMGISNLQQSSQQTEDALSQGMEALQQSLAETLSSGSLGSSNTSGNVANYMGQMATAMGKLGTLEGFIRQADNLRQQTLQQMLRILTTRQSARALLAIHDYFSRLRALSSLWLARPKE 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6107119 6111744 + Lag0040565.1 Lac13g0769 591925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0769 332 Gene3D - 46 98 - -
Lac13g0769 332 Pfam Seed dormancy control 129 204 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Lac13g0769 332 SUPERFAMILY Leucine zipper domain 47 90 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac13g0769 332 Coils Coil 123 143 - -
Lac13g0769 332 MobiDBLite consensus disorder prediction 1 48 - -
Lac13g0769 332 PANTHER TRANSCRIPTION FACTOR TGA9 24 332 - -
Lac13g0769 332 FunFam BZIP family transcription factor 46 95 - -
Lac13g0769 332 Coils Coil 66 93 - -
Lac13g0769 332 MobiDBLite consensus disorder prediction 10 24 - -
Lac13g0769 332 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 45 89 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac13g0769 332 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 50 65 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac13g0769 332 ProSiteProfiles DOG1 domain profile. 112 329 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Lac13g0769 332 Pfam bZIP transcription factor 47 87 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac13g0769 332 SMART brlzneu 43 106 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0769 Lac-Chr13:6107119 Lac6g0834 Lac-Chr6:7189251 2.20E-137 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23179 PF14144 DOG1 6.50E-32 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0769 K14431 - csv:101216885 583.178